View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18282_high_10 (Length: 383)
Name: NF18282_high_10
Description: NF18282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18282_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 5 - 367
Target Start/End: Original strand, 48277254 - 48277616
Alignment:
| Q |
5 |
gaggagcagagacatggatgatggacaagttgaagaagatgaaggagacttcagaagtaattgctggtcctaagtggaaaacgtttcttagaaaaataag |
104 |
Q |
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| T |
48277254 |
gaggagaagagacatggatgatggacaagttgaagaagatgaaggagacttcagaagtgattgctggtcctaagtggaaaacgtttcttagaaaaataag |
48277353 |
T |
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| Q |
105 |
tgggtatgggaaaaaacaacaaaagcataggtttcaatatgatgcacatagttatgctcttaatttcaatagtggggctcaaagtgaagatgaagaatat |
204 |
Q |
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| T |
48277354 |
tgggtatgggaaaaaacaacaaaagcataggtttcaatatgatgcacatagttatgctcttaattttaatagtggggctcaaagtgaagatgaagaatat |
48277453 |
T |
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| Q |
205 |
ttgcctccaagtttttctaccaggttttctaatccttatccagatgcacgtcgccagaatgaaacatgatatatatgtaatgttcttgtatttacaaaga |
304 |
Q |
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| T |
48277454 |
ttgcctccaagtttttctaccaggttttctaatccttatccagatgcacgtcgccagaatgaaacatgatatatatgtaatgttcttgtatttacaaaga |
48277553 |
T |
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| Q |
305 |
ttttaatttaatcgattacctacatttgttatataattctatatttatttgaaccgataaaca |
367 |
Q |
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| T |
48277554 |
ttttaatttaattgattacctacatttgttatataattctatatttatttgaaccgataaaca |
48277616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 197
Target Start/End: Original strand, 25246777 - 25246944
Alignment:
| Q |
30 |
caagttgaagaagatgaaggagacttcagaagtaattgctggtcctaagtggaaaacgtttcttagaaaaataagtgggtatgggaaaaaacaacaaaag |
129 |
Q |
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| T |
25246777 |
caagttgaggaagatgaaagaggtttcagaagtgattgcaggtcctaagtggaagacattcattagaaagattagcatgtatggtaagaagcaacagaag |
25246876 |
T |
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| Q |
130 |
cataggtttcaatatgatgcacatagttatgctcttaatttcaatagtggggctcaaagtgaagatga |
197 |
Q |
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| T |
25246877 |
ggtaagttccaatatgatgaacacagctatgctctcaacttcagtagtggggctcagagtgaagatga |
25246944 |
T |
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