View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18282_high_16 (Length: 302)

Name: NF18282_high_16
Description: NF18282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18282_high_16
NF18282_high_16
[»] scaffold1974 (1 HSPs)
scaffold1974 (92-169)||(24-101)
[»] scaffold1878 (2 HSPs)
scaffold1878 (92-169)||(1173-1250)
scaffold1878 (107-169)||(1-63)
[»] scaffold0290 (2 HSPs)
scaffold0290 (92-169)||(8936-9013)
scaffold0290 (246-302)||(8807-8863)
[»] chr2 (4 HSPs)
chr2 (246-302)||(23178467-23178523)
chr2 (246-302)||(23589724-23589780)
chr2 (92-157)||(23178312-23178377)
chr2 (92-157)||(23589569-23589634)
[»] chr6 (2 HSPs)
chr6 (92-168)||(34083622-34083698)
chr6 (246-302)||(34083485-34083541)
[»] chr1 (2 HSPs)
chr1 (246-302)||(30397593-30397648)
chr1 (253-302)||(30404150-30404198)


Alignment Details
Target: scaffold1974 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold1974
Description:

Target: scaffold1974; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 92 - 169
Target Start/End: Complemental strand, 101 - 24
Alignment:
Q  92 gtgtcaaaatggaatatgcatgatttccattaatttttatataattttctttcatcagaaagaaagaacaataatctg 169  Q
    |||| |||||||||||||||||||||||||||||||  || | ||||||||||| |||||||||||||||||||||||    
T  101 gtgtgaaaatggaatatgcatgatttccattaatttcaatttcattttctttcagcagaaagaaagaacaataatctg 24  T

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Target: scaffold1878 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: scaffold1878
Description:

Target: scaffold1878; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 92 - 169
Target Start/End: Original strand, 1173 - 1250
Alignment:
Q  92 gtgtcaaaatggaatatgcatgatttccattaatttttatataattttctttcatcagaaagaaagaacaataatctg 169  Q
    |||| |||||||||||||||||||||||||||||||  || | ||||||||||| |||||||||||||||||||||||    
T  1173 gtgtgaaaatggaatatgcatgatttccattaatttcaatttcattttctttcagcagaaagaaagaacaataatctg 1250  T

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Target: scaffold1878; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 107 - 169
Target Start/End: Original strand, 1 - 63
Alignment:
Q  107 atgcatgatttccattaatttttatataattttctttcatcagaaagaaagaacaataatctg 169  Q
    |||||||||||||||||||||  || | ||||||||||| |||||||||||||||||||||||    
T  1 atgcatgatttccattaatttcaatttcattttctttcagcagaaagaaagaacaataatctg 63  T

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Target: scaffold0290 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 92 - 169
Target Start/End: Complemental strand, 9013 - 8936
Alignment:
Q  92 gtgtcaaaatggaatatgcatgatttccattaatttttatataattttctttcatcagaaagaaagaacaataatctg 169  Q
    |||| |||||||||||||||||||||||||||||||  || | ||||||||||| |||||||||||||||||||||||    
T  9013 gtgtgaaaatggaatatgcatgatttccattaatttcaatttcattttctttcagcagaaagaaagaacaataatctg 8936  T

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Target: scaffold0290; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 246 - 302
Target Start/End: Complemental strand, 8863 - 8807
Alignment:
Q  246 gtaattgggtttgaacatgcatagaaggaacaaagaaaggttgttaattgttgagac 302  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  8863 gtaattgggtttgaacatgcatagaaggaacaaggaaaggttgttaattgttgagac 8807  T

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Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 246 - 302
Target Start/End: Original strand, 23178467 - 23178523
Alignment:
Q  246 gtaattgggtttgaacatgcatagaaggaacaaagaaaggttgttaattgttgagac 302  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  23178467 gtaattgggtttgaacatgcatagaaggaacaaggaaaggttgttaattgttgagac 23178523  T

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Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 246 - 302
Target Start/End: Original strand, 23589724 - 23589780
Alignment:
Q  246 gtaattgggtttgaacatgcatagaaggaacaaagaaaggttgttaattgttgagac 302  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  23589724 gtaattgggtttgaacatgcatagaaggaacaaggaaaggttgttaattgttgagac 23589780  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 92 - 157
Target Start/End: Original strand, 23178312 - 23178377
Alignment:
Q  92 gtgtcaaaatggaatatgcatgatttccattaatttttatataattttctttcatcagaaagaaag 157  Q
    |||| |||||||||||||||||||||||||||||||  || | ||||||||||| |||||||||||    
T  23178312 gtgtgaaaatggaatatgcatgatttccattaatttcaatttcattttctttcagcagaaagaaag 23178377  T

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Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 92 - 157
Target Start/End: Original strand, 23589569 - 23589634
Alignment:
Q  92 gtgtcaaaatggaatatgcatgatttccattaatttttatataattttctttcatcagaaagaaag 157  Q
    |||| |||||||||||||||||||||||||||||||  || | ||||||||||| |||||||||||    
T  23589569 gtgtgaaaatggaatatgcatgatttccattaatttcaatttcattttctttcagcagaaagaaag 23589634  T

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Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 92 - 168
Target Start/End: Complemental strand, 34083698 - 34083622
Alignment:
Q  92 gtgtcaaaatggaatatgcatgatttccattaatttttatataattttctttcatcagaaagaaagaacaataatct 168  Q
    |||| |||||||||||||||||||||||||||||||   | | ||||||||||| ||||||||||||||||||||||    
T  34083698 gtgtgaaaatggaatatgcatgatttccattaatttcattttcattttctttcagcagaaagaaagaacaataatct 34083622  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 246 - 302
Target Start/End: Complemental strand, 34083541 - 34083485
Alignment:
Q  246 gtaattgggtttgaacatgcatagaaggaacaaagaaaggttgttaattgttgagac 302  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||| ||||    
T  34083541 gtaattgggtttgaacatgcatagaaggaataaggaaaggttgttaattgtttagac 34083485  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 246 - 302
Target Start/End: Complemental strand, 30397648 - 30397593
Alignment:
Q  246 gtaattgggtttgaacatgcatagaaggaacaaagaaaggttgttaattgttgagac 302  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  30397648 gtaattgggtttgaacatgcatagaaggaac-aaggaaggttgttaattgttgagac 30397593  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 253 - 302
Target Start/End: Complemental strand, 30404198 - 30404150
Alignment:
Q  253 ggtttgaacatgcatagaaggaacaaagaaaggttgttaattgttgagac 302  Q
    |||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  30404198 ggtttgaacatgcatagaaggaac-aaggaaggttgttaattgttgagac 30404150  T

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