View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18282_high_17 (Length: 290)

Name: NF18282_high_17
Description: NF18282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18282_high_17
NF18282_high_17
[»] chr5 (1 HSPs)
chr5 (1-272)||(3004753-3005028)
[»] chr4 (2 HSPs)
chr4 (1-272)||(54654755-54655027)
chr4 (171-273)||(1065539-1065642)
[»] chr3 (1 HSPs)
chr3 (107-272)||(51649086-51649252)
[»] chr1 (2 HSPs)
chr1 (107-272)||(20604441-20604611)
chr1 (107-182)||(29310805-29310880)
[»] chr8 (1 HSPs)
chr8 (107-273)||(30847932-30848098)
[»] scaffold0390 (1 HSPs)
scaffold0390 (166-272)||(1016-1123)
[»] chr2 (1 HSPs)
chr2 (166-272)||(22140157-22140264)
[»] scaffold0786 (1 HSPs)
scaffold0786 (166-272)||(2484-2591)
[»] chr6 (1 HSPs)
chr6 (149-188)||(31449287-31449326)


Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 3005028 - 3004753
Alignment:
Q  1 ccgcaacacatcaccactgccaacacagttgaaccacatcagtctgttgtctgaaaaccgcaccagtcacaaccttaaagctttcgtctcact---aacc 97  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||   ||||    
T  3005028 ccgcagcacatcaccactgccaacacagttgaaccacatcagtctgttgtccgaaaaccgcaccagtcacaaccttaaagctttcgtctcacttataacc 3004929  T
Q  98 acagacaactttctattccattgtcttctgaataagttttacctgaaacaaaaacataattttctataaaattagcatctccaaaggaccatctcccaat 197  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  3004928 acagacaactttctattccattgtcttttgaataagttttacctgaaacaaaaacataattttctataaaattagcatctccaaaggaccacctcccaat 3004829  T
Q  198 atttatta-gatatgtacatcatcgtcatcacataaagtagtatattgatttgatatcccatggagacacttcttt 272  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3004828 atttattaggatatgtacatcatcgtcatcacataaagtagtatattgatttgatatcccatggagacacttcttt 3004753  T

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Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 54655027 - 54654755
Alignment:
Q  1 ccgcaacacatcaccactgccaacacagttgaaccacatcagtctgttgtctgaaaaccgcaccagtcacaaccttaaagctttcgtctcactaaccaca 100  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  54655027 ccgcagcacatcaccactgccaacacagttgaaccacaacagtctgctgtctgaaaaccgcactagtcacaaccttaaagctttcgtctcactaaccaca 54654928  T
Q  101 gacaactttctattccattgtcttctgaataagttttacctgaaacaaaaacataattttctataaaattagcatctccaaaggaccatctcccaatatt 200  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||    
T  54654927 gacagctttgtattccattgtcttctgaataagttttacctgaaacaaaaacataattttttataaaattagcatctccaaaggaccacctcccaatatt 54654828  T
Q  201 tatta-gatatgtacatcatcgtcatcacataaagtagtatattgatttgatatcccatggagacacttcttt 272  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54654827 tattaggatatgtacatcatcgtcatcacataaagtagtatattgatttgatatcccatggagacacttcttt 54654755  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 171 - 273
Target Start/End: Original strand, 1065539 - 1065642
Alignment:
Q  171 agcatctccaaaggaccatctcccaatatttattag-atatgtacatcatcgtcatcacataaagtagtatattgatttgatatcccatggagacacttc 269  Q
    |||||||||| | ||||| |||| |||||| ||||| ||||||| ||  || |||||||| ||| |||||||||||||| ||||||||  ||||||||||    
T  1065539 agcatctccacaagaccacctccaaatattaattaggatatgtatatagtcatcatcacaaaaaatagtatattgatttcatatcccaaagagacacttc 1065638  T
Q  270 tttt 273  Q
    ||||    
T  1065639 tttt 1065642  T

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Target: chr3 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 107 - 272
Target Start/End: Complemental strand, 51649252 - 51649086
Alignment:
Q  107 tttctattccattgtcttctgaataagttttacctgaaacaaaaacataattttctataaaattagcatctccaaaggaccatctcccaatatttatta- 205  Q
    |||||||  ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||  |||||| ||||     
T  51649252 tttctatgtcattgtcttctaaataagttttacctgaaacaaaaacataattttctataaaatttgcatctccaaaggaccacctctaaatattaattag 51649153  T
Q  206 gatatgtac---atcatcgtcatcacataaagtagtatattgatttgatatcccatggagacacttcttt 272  Q
    |||||||||   |||||| ||||||||||   ||||||||||||||||||||||||||||||||||||||    
T  51649152 gatatgtacatgatcatcatcatcacata---tagtatattgatttgatatcccatggagacacttcttt 51649086  T

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Target: chr1 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 107 - 272
Target Start/End: Complemental strand, 20604611 - 20604441
Alignment:
Q  107 tttctattccattgtcttctgaataagttttacctgaaacaaaaacataattttctataaaattagcatctccaaaggaccatctcccaatatttatta- 205  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||  |||||| ||||     
T  20604611 tttctatgccattgtcttctaaataagttttacctgaaacaaaaacataattttctataaaatttgcatctccaaaggaccacctctaaatattaattag 20604512  T
Q  206 gatatgtac-------atcatcgtcatcacataaagtagtatattgatttgatatcccatggagacacttcttt 272  Q
    |||||||||       |||||| ||||||||||   |||||||||||||||||||||||||||||| |||||||    
T  20604511 gatatgtacatgcatgatcatcatcatcacata---tagtatattgatttgatatcccatggagacgcttcttt 20604441  T

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Target: chr1; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 107 - 182
Target Start/End: Complemental strand, 29310880 - 29310805
Alignment:
Q  107 tttctattccattgtcttctgaataagttttacctgaaacaaaaacataattttctataaaattagcatctccaaa 182  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  29310880 tttctattccattgtcttttaaataagttttacctgaaacaaaaacataattttctataaaatttgcatctccaaa 29310805  T

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Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 107 - 273
Target Start/End: Original strand, 30847932 - 30848098
Alignment:
Q  107 tttctattccattgtcttctgaataagttttacctgaaacaaaaacataattttctataaaattagcatctccaaaggaccatctcccaatatttatta- 205  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||| || ||| ||||     
T  30847932 tttctattccattgtcttctaaattagttttacctgaaacaaaaacataattttctataaaatttgc-tctccaaaggaccacctccaaaaattaattag 30848030  T
Q  206 gatatgtacatcatc---gtcatcacataaagtagtatattgatttgatatcccatggagacacttctttt 273  Q
    |||||||||||||||    ||||||||||   |||||||||||||||||||||  ||||||||||||||||    
T  30848031 gatatgtacatcatcataatcatcacata---tagtatattgatttgatatcctgtggagacacttctttt 30848098  T

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Target: scaffold0390 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0390
Description:

Target: scaffold0390; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 166 - 272
Target Start/End: Complemental strand, 1123 - 1016
Alignment:
Q  166 aaattagcatctccaaaggaccatctcccaatatttattag-atatgtacatcatcgtcatcacataaagtagtatattgatttgatatcccatggagac 264  Q
    |||| |||||||||||||||||| |||| |||||| ||||| ||||||| ||  || |||||||| ||||| |||||||||||| ||||||||  |||||    
T  1123 aaataagcatctccaaaggaccacctccaaatattaattaggatatgtatatagtcatcatcacaaaaagttgtatattgatttcatatcccaaagagac 1024  T
Q  265 acttcttt 272  Q
    ||||||||    
T  1023 acttcttt 1016  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 166 - 272
Target Start/End: Original strand, 22140157 - 22140264
Alignment:
Q  166 aaattagcatctccaaaggaccatctcccaatatttattag-atatgtacatcatcgtcatcacataaagtagtatattgatttgatatcccatggagac 264  Q
    |||| |||||||||||||||||| |||| |||||| ||||| ||||||| ||  || |||||||| ||||| |||||||||||| ||||||||  |||||    
T  22140157 aaataagcatctccaaaggaccacctccaaatattaattaggatatgtatatagtcatcatcacaaaaagttgtatattgatttcatatcccaaagagac 22140256  T
Q  265 acttcttt 272  Q
    ||||||||    
T  22140257 acttcttt 22140264  T

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Target: scaffold0786 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0786
Description:

Target: scaffold0786; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 166 - 272
Target Start/End: Complemental strand, 2591 - 2484
Alignment:
Q  166 aaattagcatctccaaaggaccatctcccaatatttattag-atatgtacatcatcgtcatcacataaagtagtatattgatttgatatcccatggagac 264  Q
    |||| |||||||||||||||||| |||| || ||| ||||| ||||||| ||  || |||||||| ||||| |||||||||||| ||||||||  |||||    
T  2591 aaataagcatctccaaaggaccacctccaaagattaattaggatatgtatatagtcatcatcacaaaaagttgtatattgatttcatatcccaatgagac 2492  T
Q  265 acttcttt 272  Q
    ||||||||    
T  2491 acttcttt 2484  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 149 - 188
Target Start/End: Complemental strand, 31449326 - 31449287
Alignment:
Q  149 aaacataattttctataaaattagcatctccaaaggacca 188  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  31449326 aaacataattttctataaaattagcatctccaaaggacca 31449287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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