View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18282_high_19 (Length: 275)
Name: NF18282_high_19
Description: NF18282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18282_high_19 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 19 - 265
Target Start/End: Complemental strand, 5276499 - 5276254
Alignment:
| Q |
19 |
gctttagggtgtgatttgaggattgttagtgatgcaaatttgttttacattgaaactattttgaagcatttaggaataagtgaatacttcactgagatta |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5276499 |
gctttagggtgtgatttgaggattgttagtgatgctaatatgttttacattgaaactattttgaagcatttaggaataagtgaatacttcactgagatta |
5276400 |
T |
|
| Q |
119 |
acactaatcctggttatgttaatcaacaaggaagagttagaatttcaccttaccatgatttcaataaggcttcacatggttgcaacaatgtttgccctcc |
218 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5276399 |
acactaatcctggttatgttaatcaagaaggaagagttagaatttcaccttaccatgatttcaataaggcttcacatggttgcaacaatgtttgccctcc |
5276300 |
T |
|
| Q |
219 |
aaacatgtgcaaggtatatttatttatttttagtgtttttggtctct |
265 |
Q |
| |
|
||||||||||||||||||| ||||| |||| ||||||||||||||| |
|
|
| T |
5276299 |
aaacatgtgcaaggtatatatattt-ttttgggtgtttttggtctct |
5276254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 19 - 265
Target Start/End: Complemental strand, 5272520 - 5272275
Alignment:
| Q |
19 |
gctttagggtgtgatttgaggattgttagtgatgcaaatttgttttacattgaaactattttgaagcatttaggaataagtgaatacttcactgagatta |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||| ||||||| |||| | ||||||| |
|
|
| T |
5272520 |
gctttagggtgtgatttgaggattgttagtgatgctaatatgttttacattgaaactattttgaagcatttgggaattagtgaatgcttctcagagatta |
5272421 |
T |
|
| Q |
119 |
acactaatcctggttatgttaatcaacaaggaagagttagaatttcaccttaccatgatttcaataaggcttcacatggttgcaacaatgtttgccctcc |
218 |
Q |
| |
|
|| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5272420 |
actctaatcctggttatgttaatcaagaaggaagagttagaatttcaccttaccatgatttcaataaggcttcacatggttgcaacaatgtttgccctcc |
5272321 |
T |
|
| Q |
219 |
aaacatgtgcaaggtatatttatttatttttagtgtttttggtctct |
265 |
Q |
| |
|
||||||||||||||||||| ||||| |||| ||||||||||||||| |
|
|
| T |
5272320 |
aaacatgtgcaaggtatatatattt-ttttgggtgtttttggtctct |
5272275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 22 - 202
Target Start/End: Original strand, 5250044 - 5250224
Alignment:
| Q |
22 |
ttagggtgtgatttgaggattgttagtgatgcaaatttgttttacattgaaactattttgaagcatttaggaataagtgaatacttcactgagattaaca |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| |||| ||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
5250044 |
ttagggtgtgatttgaggattgttagtgatgctaatacatttttcattgaaacaattttgaagaatttgggaataagtgaatacttcactgagattaaca |
5250143 |
T |
|
| Q |
122 |
ctaatcctggttatgttaatcaacaaggaagagttagaatttcaccttaccatgatttcaataaggcttcacatggttgca |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
5250144 |
ctaatcctggttatgttaatcaacaaggaagattaagaattttaccttaccatgatttcaataaggattcacatggttgca |
5250224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 19 - 228
Target Start/End: Original strand, 14944419 - 14944624
Alignment:
| Q |
19 |
gctttagggtgtgatttgagg-attgttagtgatgcaaatttgttttacattgaaactattttgaagcatttaggaataagtgaata-cttcactgagat |
116 |
Q |
| |
|
|||||||||||||||||||| ||||| || ||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||| |||| | ||||| |
|
|
| T |
14944419 |
gctttagggtgtgatttgagttattgtgagcgatgccaatgtgttttacattgaaactattttgaagcatttgggaataagtgaatatcttctcagagat |
14944518 |
T |
|
| Q |
117 |
taacactaatcctggttatgttaatcaacaaggaagagttagaatttcaccttaccatgatttcaataaggcttcacatggttgcaacaatgtttgccct |
216 |
Q |
| |
|
||||||||||| ||||||||||||| || |||| ||| | ||||| ||||| ||||| ||||| ||||||||||||||||||| | ||| |||| |
|
|
| T |
14944519 |
taacactaatcttggttatgttaatgaagaaggtagactaagaatgtcaccataccac---ttcaacaaggcttcacatggttgcac---tctttaccct |
14944612 |
T |
|
| Q |
217 |
ccaaacatgtgc |
228 |
Q |
| |
|
|||||||||||| |
|
|
| T |
14944613 |
ccaaacatgtgc |
14944624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 5269261 - 5269475
Alignment:
| Q |
19 |
gctttagggtgtgatttgaggattgttagtgatgcaaatttgttttacattgaaactattttgaagcatttaggaataagtgaatacttcactgagatta |
118 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||| ||| | ||| |||||| || |||||||||||||| ||||| ||||||| |||| ||||||||| |
|
|
| T |
5269261 |
gctttggggtgtgatttgaggattgttagcgatgctaatacgattttcattgacacaattttgaagcatttgggaattagtgaatgcttctctgagatta |
5269360 |
T |
|
| Q |
119 |
acactaatcctggttatgttaatcaacaaggaagagttagaatttcaccttaccatgatttcaataaggcttcacatggttgcaacaatgtttgccctcc |
218 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||| | | | || ||||| ||||| ||||| || ||||| |||||||| || | |||| || || |
|
|
| T |
5269361 |
acaccaatcctggttatgttaatcaagaaggaagattaaaagttatgccttatcatgacttcaacaaagcttctcatggttg---cactctttgtccccc |
5269457 |
T |
|
| Q |
219 |
aaacatgtgcaaggtata |
236 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
5269458 |
aaacatgtgcaaggtata |
5269475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 26 - 186
Target Start/End: Complemental strand, 43110420 - 43110263
Alignment:
| Q |
26 |
ggtgtgatttgaggattgttagtgatgcaaatttgttttacattgaaactattttgaagcatttaggaataagtgaatacttcactgagattaacactaa |
125 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||| |||||| || ||| |||||||||| || || || |||| ||| | |||||||||||||| |
|
|
| T |
43110420 |
ggtgtgatttgaggattgtaagtgatgcaaacacgtttttcattgagacaattctgaagcattttggtattagggaatgtttctcagagattaacactaa |
43110321 |
T |
|
| Q |
126 |
tcctggttatgttaatcaacaaggaagagttagaatttcaccttaccatgatttcaataag |
186 |
Q |
| |
|
||| ||||||||| || ||||||| | ||||||| |||||||||||| |||||||| |
|
|
| T |
43110320 |
tccaggttatgttgat---gaaggaaggttgagaattttgccttaccatgatctcaataag |
43110263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 26 - 163
Target Start/End: Complemental strand, 26314884 - 26314747
Alignment:
| Q |
26 |
ggtgtgatttgaggattgttagtgatgcaaatttgttttacattgaaactattttgaagcatttaggaataagtgaatacttcactgagattaacactaa |
125 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||| |||||| || ||| | ||||| || ||||| || |||| ||| | |||||||||||||| |
|
|
| T |
26314884 |
ggtgtgatttgaggattgtaagtgatgcaaacacatttttcattgagacaattctaaagcactttggaattagggaatgtttctcggagattaacactaa |
26314785 |
T |
|
| Q |
126 |
tcctggttatgttaatcaacaaggaagagttagaattt |
163 |
Q |
| |
|
||| ||||||||| || || |||||||| | ||||||| |
|
|
| T |
26314784 |
tccaggttatgttgatgaagaaggaagattgagaattt |
26314747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University