View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18282_high_21 (Length: 251)

Name: NF18282_high_21
Description: NF18282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18282_high_21
NF18282_high_21
[»] chr7 (6 HSPs)
chr7 (1-241)||(10601643-10601883)
chr7 (127-218)||(16824335-16824426)
chr7 (128-217)||(16968759-16968848)
chr7 (126-195)||(17008111-17008180)
chr7 (137-224)||(16992522-16992609)
chr7 (1-57)||(16968605-16968661)
[»] chr4 (1 HSPs)
chr4 (141-224)||(35262691-35262774)


Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 10601883 - 10601643
Alignment:
Q  1 tcacctcctcattattcatctcagaaattccattgtgtctatcaattgcctctctcaacaattcctctgcgacattatcatattttcgcccacccttttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  10601883 tcacctcctcattattcatctcagaaattccattgtgtctatcaattgcctctctcaacaattcctctgcgacattatcgtattttcgcccacccttttt 10601784  T
Q  101 cttctctttctctttaccatcattatcagaagaactatcgtcatcattgtcagaaatctcattcagctcatcaactctaaaatcctcatcgctagtctca 200  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10601783 cttctctttctccttaccatcattatcagaagaactatcgtcatcattgtcagaaatctcattcagctcatcaactctaaaatcctcatcgctagtctca 10601684  T
Q  201 ttttcttcactttcatcagaatcaaaacagtgttcttcatc 241  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  10601683 ttttcttcactttcatcagaatcaaaacagtgttcttcatc 10601643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 127 - 218
Target Start/End: Original strand, 16824335 - 16824426
Alignment:
Q  127 cagaagaactatcgtcatcattgtcagaaatctcattcagctcatcaactctaaaatcctcatcgctagtctcattttcttcactttcatca 218  Q
    |||||||||| || |||||| | |||||||||||||||| |||||| ||  ||||||||||||| |||||||||||||||||||||||||||    
T  16824335 cagaagaactttcatcatcactttcagaaatctcattcacctcatccaccataaaatcctcatcactagtctcattttcttcactttcatca 16824426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 128 - 217
Target Start/End: Original strand, 16968759 - 16968848
Alignment:
Q  128 agaagaactatcgtcatcattgtcagaaatctcattcagctcatcaactctaaaatcctcatcgctagtctcattttcttcactttcatc 217  Q
    ||||||| | || ||||||||| || |||||||||||| ||||||||| |||||||||||||| || |||||||||||||||||||||||    
T  16968759 agaagaattgtcatcatcattgccaaaaatctcattcatctcatcaaccctaaaatcctcatcactggtctcattttcttcactttcatc 16968848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 126 - 195
Target Start/End: Original strand, 17008111 - 17008180
Alignment:
Q  126 tcagaagaactatcgtcatcattgtcagaaatctcattcagctcatcaactctaaaatcctcatcgctag 195  Q
    ||||||||||| || ||||||||||||||||||||||||||||| |||||| ||||||| ||||| ||||    
T  17008111 tcagaagaactgtcatcatcattgtcagaaatctcattcagctcctcaactttaaaatcttcatcactag 17008180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 137 - 224
Target Start/End: Original strand, 16992522 - 16992609
Alignment:
Q  137 atcgtcatcattgtcagaaatctcattcagctcatcaactctaaaatcctcatcgctagtctcattttcttcactttcatcagaatca 224  Q
    ||||||||||||||| |||||||||||| |||||||||||  |||||| ||||| ||||  |||||| ||||||| | ||| ||||||    
T  16992522 atcgtcatcattgtctgaaatctcattcggctcatcaacttcaaaatcttcatcactagaatcatttgcttcactcttatccgaatca 16992609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 16968605 - 16968661
Alignment:
Q  1 tcacctcctcattattcatctcagaaattccattgtgtctatcaattgcctctctca 57  Q
    ||||||| |||| |||| |||||||||||||| | |||||||| ||| |||||||||    
T  16968605 tcacctcttcatcattcctctcagaaattccactttgtctatccattacctctctca 16968661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 141 - 224
Target Start/End: Complemental strand, 35262774 - 35262691
Alignment:
Q  141 tcatcattgtcagaaatctcattcagctcatcaactctaaaatcctcatcgctagtctcattttcttcactttcatcagaatca 224  Q
    |||| |||||| ||||| |||||||| |||||||||  |||||| ||||| ||||  |||||||||||||| ||||||||||||    
T  35262774 tcatgattgtctgaaatttcattcagttcatcaactgcaaaatcttcatcactagagtcattttcttcactctcatcagaatca 35262691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University