View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18282_high_26 (Length: 226)
Name: NF18282_high_26
Description: NF18282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18282_high_26 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 11010782 - 11010578
Alignment:
| Q |
1 |
caggaaatgaagctagcaaagaaaatgatgattgtggcgttatggtgtatacagacaaaacctgatgatcgtccttcaatggataaagttttggagatgc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11010782 |
caggaaatgaagctagcaaagaaaatgatgattgtggcgttatggtgtatacagacaaaacctgatgatcgtccttcaatggataaagttttggagatgc |
11010683 |
T |
|
| Q |
101 |
ttgaagaagaagatggagacttgcagattcctaataagccttacttttgtccacaagattcaccaatagcggatgtttacagtagcaactcatggacttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11010682 |
ttgaagaagaagatggagacttgcagattcctaataagccttacttttgtccacaagattcaccaatagcggatgtttacagtagcaactcatggacttc |
11010583 |
T |
|
| Q |
201 |
cgatg |
205 |
Q |
| |
|
||||| |
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|
| T |
11010582 |
cgatg |
11010578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 10914481 - 10914305
Alignment:
| Q |
1 |
caggaaatgaagctagcaaagaaaatgatgattgtggcgttatggtgtatacagacaaaacctgatgatcgtccttcaatggataaagttttggagatgc |
100 |
Q |
| |
|
||||||||||| | |||||||||||||||||||| || || ||||||||||| |||||||| || ||||||||||||||||| |||||||||||||||| |
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| T |
10914481 |
caggaaatgaaattggcaaagaaaatgatgattgtagctttgtggtgtatacaaacaaaaccagaggatcgtccttcaatggaaaaagttttggagatgc |
10914382 |
T |
|
| Q |
101 |
ttgaagaagaagatggagacttgcagattcctaataagccttacttttgtccacaagattcaccaatagcggatgtt |
177 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||| ||| |||||| |
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| T |
10914381 |
ttgaagaagaagatggagacttgcaaattcctaataagccttatttttgtccacaagatccaccaacagcagatgtt |
10914305 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 11028827 - 11029003
Alignment:
| Q |
1 |
caggaaatgaagctagcaaagaaaatgatgattgtggcgttatggtgtatacagacaaaacctgatgatcgtccttcaatggataaagttttggagatgc |
100 |
Q |
| |
|
||||||||||| | |||||||||||||||| || ||| || ||||||||||| |||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
11028827 |
caggaaatgaaattggcaaagaaaatgatgactgcggctttgtggtgtatacaaacaaaaccagaggatcgtccttcaatggataaagttttggagatgc |
11028926 |
T |
|
| Q |
101 |
ttgaagaagaagatggagacttgcagattcctaataagccttacttttgtccacaagattcaccaatagcggatgtt |
177 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||| | ||| ||||||| |
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|
| T |
11028927 |
ttgaagaagaagatggagacttgcaaattcctaataagccttacttttgtccgcaagatccactagtagaggatgtt |
11029003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 16 - 177
Target Start/End: Complemental strand, 10979201 - 10979040
Alignment:
| Q |
16 |
gcaaagaaaatgatgattgtggcgttatggtgtatacagacaaaacctgatgatcgtccttcaatggataaagttttggagatgcttgaagaagaagatg |
115 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||||||||||| || || |||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
10979201 |
gcaaagaaaatgatgattgtggctttgtggtgtatacagacaaaacccgacgaccgtccttcaatggataaagtgttggagatgcttgaagaagaagatg |
10979102 |
T |
|
| Q |
116 |
gagacttgcagattcctaataagccttacttttgtccacaagattcaccaatagcggatgtt |
177 |
Q |
| |
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| |||||||| |||||||||||||||||||||||| ||||||| ||||| ||| ||||||| |
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| T |
10979101 |
gggacttgcaaattcctaataagccttacttttgtttacaagatccaccagtagaggatgtt |
10979040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 10903321 - 10903156
Alignment:
| Q |
1 |
caggaaatgaagctagcaaagaaaatgatgattgtggcgttatggtgtatacagacaaaacctgatgatcgtccttcaatggataaagttttggagatgc |
100 |
Q |
| |
|
||||||||||| | |||||||||||||||| ||||| || ||||||||||| |||||||| || |||||||||||||||||||||||||||||||||| |
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|
| T |
10903321 |
caggaaatgaaattggcaaagaaaatgatgaccgtggctttgtggtgtatacaaacaaaacccgaggatcgtccttcaatggataaagttttggagatgc |
10903222 |
T |
|
| Q |
101 |
ttgaagaagaagatggagacttgcagattcctaataagccttacttttgtccacaagattcaccaa |
166 |
Q |
| |
|
||||| |||||||||| ||||| || ||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
10903221 |
ttgaaaaagaagatggggacttacaaattcctaataagccttacttttgtccacaagatccaccaa |
10903156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 10932862 - 10932685
Alignment:
| Q |
1 |
caggaaatgaagctagcaaagaaaatgatgattgtggcgttatggtgtatacagacaaaacctgatgatcgtccttcaatggataaagtttt-ggagatg |
99 |
Q |
| |
|
||||||||||| | ||||||||||||||||| ||||| || ||||||||||| ||||| || || ||||||||||||||||| |||||||| ||||||| |
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|
| T |
10932862 |
caggaaatgaaattggcaaagaaaatgatgatcgtggctttgtggtgtatacaaacaaatcccgaggatcgtccttcaatggaaaaagttttaggagatg |
10932763 |
T |
|
| Q |
100 |
cttgaagaagaagatggagacttgcagattcctaataagccttacttttgtccacaagattcaccaatagcggatgtt |
177 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||| ||| ||||||| |
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|
| T |
10932762 |
cttgaagaagaagatggggacttgcaaattcctaataagccttacttttgtccacaagatccaccagtagaggatgtt |
10932685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 16 - 159
Target Start/End: Original strand, 11005255 - 11005398
Alignment:
| Q |
16 |
gcaaagaaaatgatgattgtggcgttatggtgtatacagacaaaacctgatgatcgtccttcaatggataaagttttggagatgcttgaagaagaagatg |
115 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||| | |||||||||||||||||||||| |
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|
| T |
11005255 |
gcaaagaaaatgatgattgtggctttatggtgtatacagacaaaaccaggtgatcgtccttcaatggataaagtgattgagatgcttgaagaagaagatg |
11005354 |
T |
|
| Q |
116 |
gagacttgcagattcctaataagccttacttttgtccacaagat |
159 |
Q |
| |
|
| || ||||| || ||||||||||||||| ||| |||||||||| |
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|
| T |
11005355 |
gggatttgcaaatgcctaataagccttacctttatccacaagat |
11005398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 16 - 159
Target Start/End: Original strand, 10993939 - 10994082
Alignment:
| Q |
16 |
gcaaagaaaatgatgattgtggcgttatggtgtatacagacaaaacctgatgatcgtccttcaatggataaagttttggagatgcttgaagaagaagatg |
115 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||| |
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|
| T |
10993939 |
gcaaagaaaatgatgattgtggcattatggtgtattcagacaaaacctagtgatcgtccttcaatggataaagtgattgagatgcttgaagaagaagatg |
10994038 |
T |
|
| Q |
116 |
gagacttgcagattcctaataagccttacttttgtccacaagat |
159 |
Q |
| |
|
| || ||||| || ||||||||||||||| ||| |||||||||| |
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|
| T |
10994039 |
gggatttgcaaatgcctaataagccttacctttatccacaagat |
10994082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 16 - 159
Target Start/End: Complemental strand, 10901530 - 10901387
Alignment:
| Q |
16 |
gcaaagaaaatgatgattgtggcgttatggtgtatacagacaaaacctgatgatcgtccttcaatggataaagttttggagatgcttgaagaagaagatg |
115 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||| | |||||||||| | ||||||||| |
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|
| T |
10901530 |
gcaaagaaaacgatgattgtggcattatggtgtactcagacaaaacctagtgatcgtccttcaatggataaagtgattgagatgcttgcataagaagatg |
10901431 |
T |
|
| Q |
116 |
gagacttgcagattcctaataagccttacttttgtccacaagat |
159 |
Q |
| |
|
| || ||||| || ||||| ||||||||| ||| |||||||||| |
|
|
| T |
10901430 |
gggatttgcaaatgcctaagaagccttacctttatccacaagat |
10901387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 16 - 141
Target Start/End: Complemental strand, 11033058 - 11032933
Alignment:
| Q |
16 |
gcaaagaaaatgatgattgtggcgttatggtgtatacagacaaaacctgatgatcgtccttcaatggataaagttttggagatgcttgaagaagaagatg |
115 |
Q |
| |
|
||||||||||||||||| ||||| || |||||||| ||| | |||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
11033058 |
gcaaagaaaatgatgatagtggctttgtggtgtattcaggcgaaacctagtgatcgtcctccaatggataaagtgttggagatgcttgaagaagaagatg |
11032959 |
T |
|
| Q |
116 |
gagacttgcagattcctaataagcct |
141 |
Q |
| |
|
||| ||||| || |||||||||||| |
|
|
| T |
11032958 |
aagatttgcaaatgcctaataagcct |
11032933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 16 - 141
Target Start/End: Complemental strand, 11007605 - 11007480
Alignment:
| Q |
16 |
gcaaagaaaatgatgattgtggcgttatggtgtatacagacaaaacctgatgatcgtccttcaatggataaagttttggagatgcttgaagaagaagatg |
115 |
Q |
| |
|
||||||||||||||||| ||||| || |||||||| || | |||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
11007605 |
gcaaagaaaatgatgatagtggctttgtggtgtattcaagcgaaacctagtgatcgtcctccaatggataaagtgttggagatgcttgaagaagaagatg |
11007506 |
T |
|
| Q |
116 |
gagacttgcagattcctaataagcct |
141 |
Q |
| |
|
||| ||||| || |||||| ||||| |
|
|
| T |
11007505 |
aagatttgcaaatgcctaatcagcct |
11007480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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