View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18282_high_27 (Length: 220)
Name: NF18282_high_27
Description: NF18282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18282_high_27 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 54985943 - 54986129
Alignment:
| Q |
18 |
agattgaggtgatattggatgctgaatctgtattttgtttgactgatcttatctacgtttcagggtttatgggggctatgatatccaatgtggcctttgt |
117 |
Q |
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| T |
54985943 |
agattgagttgatataggatgctgaatctgtattttgtttgactgatcttatctatgtttcagggtttatgggggctatgatatccaatgtggcctttgt |
54986042 |
T |
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| Q |
118 |
gtttaggaatatattctcaaagaagggaatgaaaggaatgtctgttagtggaatgaactactatgcttgtctctccatattatctct |
204 |
Q |
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| T |
54986043 |
gtttaggaatatattctcaaagaagggaatgaaaggaatgtctgttagtggaatgaactactatgcttgtctctccatattatctct |
54986129 |
T |
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Target: chr2 (Bit Score: 72; Significance: 6e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 74 - 189
Target Start/End: Original strand, 7883510 - 7883625
Alignment:
| Q |
74 |
gtttcagggtttatgggggctatgatatccaatgtggcctttgtgtttaggaatatattctcaaagaagggaatgaaaggaatgtctgttagtggaatga |
173 |
Q |
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| T |
7883510 |
gtttcaggatttatgggagctatgatatcaaatttggcatttgtatttaggaatatattctcaaagaaaggaatgaatggaatgagtgttagtggaatga |
7883609 |
T |
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| Q |
174 |
actactatgcttgtct |
189 |
Q |
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| T |
7883610 |
actattatgcttgtct |
7883625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 76 - 187
Target Start/End: Original strand, 18396534 - 18396645
Alignment:
| Q |
76 |
ttcagggtttatgggggctatgatatccaatgtggcctttgtgtttaggaatatattctcaaagaagggaatgaaaggaatgtctgttagtggaatgaac |
175 |
Q |
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|||||| |||||||||||||||||||| ||| |||| |||||||| | || || ||||| || ||||| ||||| |||| |||||||||||||||||| |
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| T |
18396534 |
ttcaggttttatgggggctatgatatcaaatctggcatttgtgttccgcaacatcttctcgaaaaaggggatgaagggaaagtctgttagtggaatgaat |
18396633 |
T |
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| Q |
176 |
tactatgcttgt |
187 |
Q |
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| T |
18396634 |
tactatgcttgt |
18396645 |
T |
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