View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18282_high_3 (Length: 734)

Name: NF18282_high_3
Description: NF18282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18282_high_3
NF18282_high_3
[»] chr5 (6 HSPs)
chr5 (260-718)||(3726345-3726802)
chr5 (13-187)||(3726095-3726269)
chr5 (635-715)||(3723566-3723645)
chr5 (13-131)||(3724223-3724338)
chr5 (309-374)||(21045832-21045897)
chr5 (331-364)||(24538279-24538312)
[»] chr6 (3 HSPs)
chr6 (331-474)||(6889394-6889541)
chr6 (400-457)||(9665004-9665061)
chr6 (637-716)||(27972077-27972156)
[»] chr8 (3 HSPs)
chr8 (309-422)||(14101154-14101271)
chr8 (429-476)||(14099692-14099739)
chr8 (309-347)||(39643284-39643322)
[»] chr1 (1 HSPs)
chr1 (329-457)||(38010726-38010859)
[»] chr7 (3 HSPs)
chr7 (337-473)||(24977261-24977401)
chr7 (309-521)||(34144402-34144617)
chr7 (400-473)||(24976973-24977046)
[»] chr3 (1 HSPs)
chr3 (331-452)||(25315116-25315240)
[»] scaffold0408 (1 HSPs)
scaffold0408 (429-476)||(10034-10081)
[»] chr4 (2 HSPs)
chr4 (403-452)||(27065612-27065661)
chr4 (403-452)||(27086715-27086764)
[»] chr2 (1 HSPs)
chr2 (436-521)||(38621652-38621736)


Alignment Details
Target: chr5 (Bit Score: 362; Significance: 0; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 260 - 718
Target Start/End: Original strand, 3726345 - 3726802
Alignment:
Q  260 agtaaacttgttccagcttcctaacattggtgctttcattgagaatgtatcaaaaacactatgtataggaaggatagtaaccctaatgaatctaaagact 359  Q
    |||||||||||| |||||| |||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||  |||||||||||    
T  3726345 agtaaacttgtttcagctttctaacattggtgctttcattgagaatgtgtcaaagacactatatataggaaggatagtaaccctaatagatctaaagact 3726444  T
Q  360 aaagatctaatttaaagatccaactagaaacaattaaaaggacaaactaatataattatacttctcaaataaataactaaattatttatttgaatctagt 459  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  3726445 aaagacctaatttaaagatccaactagaaacaattaaaatgacaaactaatataattatacttctcaaataaataactaaattatttatttgagtctagt 3726544  T
Q  460 tatactctctaacattgccaaccgatccacttgaaccttatcctcaaggctcaacactctcttaacaatttctgttggagcattccatgatatgcaaaat 559  Q
    || ||||| ||||||||||||||||| ||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  3726545 tacactctttaacattgccaaccgattcacttgaaccttatcctcatggttcaacactctc-taacaatttctgttggagcattccatgatatgcaaaat 3726643  T
Q  560 atagtgataacaatattggcaacttggaattaaggttccctcccttcaccgttagttaannnnnnnactcttgaaaattgttgtggcaggtagcacatta 659  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||| |||||||    
T  3726644 atagtgataacaatattggcaacttggaattaaggttccctcccttcaccgttagttaatttttttactcttgaaaattgttgtggcaggtaacacatta 3726743  T
Q  660 aatagaaagtatgttacctagttcaaattaagagacaatagaacatatgaggtaaatta 718  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  3726744 aatagaaagtatgttacctagttcaaatttagagacaatagaacatatgaggtaaatta 3726802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 155; E-Value: 7e-82
Query Start/End: Original strand, 13 - 187
Target Start/End: Original strand, 3726095 - 3726269
Alignment:
Q  13 attattctaaaattgtatgtgttgctcaaccaacgcgttgaatgataagttgatgaagggtaaaattgttctatatgaaggaagtgaagaagctttagtg 112  Q
    |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  3726095 attattctaaaattgtatgtgtcgctctaccaacgcgttgaatgataagttgatgaagggtaaaattgttctctatgaaggaagtgaagaagctttagtg 3726194  T
Q  113 gtcttgaaagttggggttaacggtatctttgagacaatgtctacaaactatctaaaggaataaaatgaatcaaat 187  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  3726195 gtcttgaaagttggggttaacggtatctttaagacaatgtctacaaactatccaaaggaataaaatgaatcaaat 3726269  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 635 - 715
Target Start/End: Original strand, 3723566 - 3723645
Alignment:
Q  635 aattgttgtggcaggtagcacattaaatagaaagtatgttacctagttcaaattaagagacaatagaacatatgaggtaaa 715  Q
    ||||| |||||| |||||||| ||||||||||||| ||||| || ||||| | || ||||||||| ||||||||| |||||    
T  3723566 aattggtgtggctggtagcacgttaaatagaaagtttgtta-ctggttcatactaggagacaataaaacatatgaagtaaa 3723645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 13 - 131
Target Start/End: Original strand, 3724223 - 3724338
Alignment:
Q  13 attattctaaaattgtatgtgttgctcaaccaacgcgttgaatgataagttgatgaagggtaaaattgttctatatgaaggaagtgaagaagctttagtg 112  Q
    |||||||||||||||||| ||||  |||||||||  |||||   |||||||| |||| |||||||||||| | || ||| ||||| ||||||| | | ||    
T  3724223 attattctaaaattgtatttgtttttcaaccaacatgttga---ataagttggtgaaaggtaaaattgttttctacgaatgaagtcaagaagcctcattg 3724319  T
Q  113 gtcttgaaagttggggtta 131  Q
    | |||| ||||||| ||||    
T  3724320 gccttgtaagttggtgtta 3724338  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 309 - 374
Target Start/End: Complemental strand, 21045897 - 21045832
Alignment:
Q  309 tcaaaaacactatgtataggaaggatagtaaccctaatgaatctaaagactaaagatctaatttaa 374  Q
    ||||||||||||| |||||||| ||| ||||||||||||   |||||||||| ||| |||| ||||    
T  21045897 tcaaaaacactatatataggaatgatcgtaaccctaatgggcctaaagactacagacctaacttaa 21045832  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 331 - 364
Target Start/End: Complemental strand, 24538312 - 24538279
Alignment:
Q  331 ggatagtaaccctaatgaatctaaagactaaaga 364  Q
    ||||| ||||||||||||||||||||||||||||    
T  24538312 ggataataaccctaatgaatctaaagactaaaga 24538279  T

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Target: chr6 (Bit Score: 55; Significance: 3e-22; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 331 - 474
Target Start/End: Complemental strand, 6889541 - 6889394
Alignment:
Q  331 ggatagtaaccctaatgaatctaaagactaaagatctaatttaaagatccaactagaaacaattaaaagga----caaactaatataattatacttctca 426  Q
    ||||||||||||||||| | |||||||||||||| | || |||||| ||||||||  ||||| | ||||||    |||||||| |||||| ||||| | |    
T  6889541 ggatagtaaccctaatggacctaaagactaaagacccaacttaaaggtccaactaacaacaactcaaaggaaagacaaactaacataattttacttataa 6889442  T
Q  427 aataaataactaaattatttatttgaatctagttatactctctaacat 474  Q
    | |||||| ||||||||||||||||| |||||||  ||||||||||||    
T  6889441 actaaatagctaaattatttatttgagtctagttgcactctctaacat 6889394  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 400 - 457
Target Start/End: Original strand, 9665004 - 9665061
Alignment:
Q  400 gacaaactaatataattatacttctcaaataaataactaaattatttatttgaatcta 457  Q
    ||||||||||||||||| ||||||| || |||||| ||||||||||||||| ||||||    
T  9665004 gacaaactaatataattttacttctaaattaaatagctaaattatttattttaatcta 9665061  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 637 - 716
Target Start/End: Complemental strand, 27972156 - 27972077
Alignment:
Q  637 ttgttgtggcaggtagcacattaaatagaaagtatgttacctagttcaaattaagagacaatagaacatatgaggtaaat 716  Q
    |||||||||| | ||| || ||| |||| |||| ||||||| || |||||||| | ||||||||||| ||||||||||||    
T  27972156 ttgttgtggctgctagtacgttagataggaagtttgttaccaagatcaaattaggtgacaatagaacttatgaggtaaat 27972077  T

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Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 309 - 422
Target Start/End: Complemental strand, 14101271 - 14101154
Alignment:
Q  309 tcaaaaacactatgtataggaaggatagtaaccctaatgaatctaaagactaaagatctaatttaaagatccaactagaaacaattaa----aaggacaa 404  Q
    ||||| ||||||| ||||| ||||||||||||||||||||  |||||||||||| | |||||||||||  ||||||| |||||| | |    || |||||    
T  14101271 tcaaagacactatatatagaaaggatagtaaccctaatgagcctaaagactaaaaacctaatttaaaggcccaactaaaaacaactcaattgaaagacaa 14101172  T
Q  405 actaatataattatactt 422  Q
    ||||||||||||||||||    
T  14101171 actaatataattatactt 14101154  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 429 - 476
Target Start/End: Complemental strand, 14099739 - 14099692
Alignment:
Q  429 taaataactaaattatttatttgaatctagttatactctctaacattg 476  Q
    |||||| ||||||||||||||||| |||||||  ||||||||||||||    
T  14099739 taaatatctaaattatttatttgagtctagttgcactctctaacattg 14099692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 309 - 347
Target Start/End: Complemental strand, 39643322 - 39643284
Alignment:
Q  309 tcaaaaacactatgtataggaaggatagtaaccctaatg 347  Q
    ||||||||||||  |||||||||||||||||||||||||    
T  39643322 tcaaaaacactaaatataggaaggatagtaaccctaatg 39643284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 329 - 457
Target Start/End: Original strand, 38010726 - 38010859
Alignment:
Q  329 aaggatagtaaccctaatgaatctaaagactaaagatctaatttaaagatccaactagaaacaatt---aa--aaggacaaactaatataattatacttc 423  Q
    ||||||| ||||||||||||   ||||||||||||| | || ||||||||||||||| |||||| |   ||  || ||||||||||||||||||||||||    
T  38010726 aaggatactaaccctaatgagcttaaagactaaagacccaacttaaagatccaactaaaaacaactctcaatgaaagacaaactaatataattatacttc 38010825  T
Q  424 tcaaataaataactaaattatttatttgaatcta 457  Q
    | || ||||||  |||||||||||||||| ||||    
T  38010826 taaattaaataggtaaattatttatttgagtcta 38010859  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 337 - 473
Target Start/End: Original strand, 24977261 - 24977401
Alignment:
Q  337 taaccctaatgaatctaaagactaaagatctaatttaaagatccaactagaaacaa-ttaaaag---gacaaactaatataattatacttctcaaataaa 432  Q
    ||||||||||||| |||||||||||||| |||  | ||||  |||||||||||||| | |||||   ||||||||||||||||| | ||  | || ||||    
T  24977261 taaccctaatgaacctaaagactaaagacctagctaaaaggcccaactagaaacaactcaaaagaaagacaaactaatataattttgctcttaaactaaa 24977360  T
Q  433 taactaaattatttatttgaatctagttatactctctaaca 473  Q
    || |||||||||| |||  |||||| ||  |||||||||||    
T  24977361 tagctaaattattcattgaaatctaattgcactctctaaca 24977401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 309 - 521
Target Start/End: Complemental strand, 34144617 - 34144402
Alignment:
Q  309 tcaaaaacactatgtataggaaggatagtaaccctaatgaatctaaagactaaagatctaatttaaagatccaactagaaacaattaa----aaggacaa 404  Q
    ||||| ||||||| |||| ||| ||||||||||||||||   |||||||||||||| |||| || |||  |||||||| ||||| | |    || || ||    
T  34144617 tcaaagacactatatataagaatgatagtaaccctaatgggcctaaagactaaagacctaactt-aaggcccaactagcaacaactcaagtgaaagataa 34144519  T
Q  405 actaatataattatacttctcaaataaataactaaattatttatttgaatctagttatactctctaacattgccaaccgatccacttgaaccttatcctc 504  Q
    |||||||||||  ||||  | || || ||| |||||||||| ||||||  ||| ||  | |||||| |||| || || | | |||||||||||| |||||    
T  34144518 actaatataatcttactcttaaactagatatctaaattattcatttgagcctaattgcattctctatcattaccgacgggttcacttgaaccttgtcctc 34144419  T
Q  505 aaggctcaacactctct 521  Q
    |||| ||||||| ||||    
T  34144418 aaggttcaacaccctct 34144402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 400 - 473
Target Start/End: Complemental strand, 24977046 - 24976973
Alignment:
Q  400 gacaaactaatataattatacttctcaaataaataactaaattatttatttgaatctagttatactctctaaca 473  Q
    ||||||||||||||||| | ||  | || ||||||||||||||||| |||| |||||| ||  |||||||||||    
T  24977046 gacaaactaatataattttgctcttaaactaaataactaaattattcatttaaatctaattgcactctctaaca 24976973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 331 - 452
Target Start/End: Original strand, 25315116 - 25315240
Alignment:
Q  331 ggatagtaaccctaatgaatctaaagactaaagatctaatttaaagatccaactagaaacaattaaaagg----acaaactaatataattatacttctca 426  Q
    ||||| ||||||||| |||  || |||||||||||| || | |||| |||||||| |||||| |||| ||    |||| |||||||||||  |||||| |    
T  25315116 ggataataaccctaacgaacttagagactaaagatccaactaaaaggtccaactaaaaacaactaaatggaaaaacaacctaatataattgcacttct-a 25315214  T
Q  427 aataaataactaaattatttatttga 452  Q
    | |||||| |||||||||||||||||    
T  25315215 attaaatatctaaattatttatttga 25315240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0408 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 429 - 476
Target Start/End: Complemental strand, 10081 - 10034
Alignment:
Q  429 taaataactaaattatttatttgaatctagttatactctctaacattg 476  Q
    |||||| ||||||||||||||||| |||||||  ||||||||||||||    
T  10081 taaatatctaaattatttatttgagtctagttgcactctctaacattg 10034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 403 - 452
Target Start/End: Complemental strand, 27065661 - 27065612
Alignment:
Q  403 aaactaatataattatacttctcaaataaataactaaattatttatttga 452  Q
    |||||||||||||| ||||| | || |||||| |||||||||||||||||    
T  27065661 aaactaatataattttacttataaattaaatatctaaattatttatttga 27065612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 403 - 452
Target Start/End: Complemental strand, 27086764 - 27086715
Alignment:
Q  403 aaactaatataattatacttctcaaataaataactaaattatttatttga 452  Q
    |||||||||||||| ||||| | || |||||| |||||||||||||||||    
T  27086764 aaactaatataattttacttataaattaaatatctaaattatttatttga 27086715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 436 - 521
Target Start/End: Original strand, 38621652 - 38621736
Alignment:
Q  436 ctaaattatttatttgaatctagttatactctctaacattgccaaccgatccacttgaaccttatcctcaaggctcaacactctct 521  Q
    ||||||||||||||||| |||||||  |||||||||||||| | || | | |||||||||||| || |||||| |||  |||||||    
T  38621652 ctaaattatttatttgagtctagttgcactctctaacattgtcgacag-ttcacttgaaccttgtcttcaaggttcagaactctct 38621736  T

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