View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18282_low_10 (Length: 459)
Name: NF18282_low_10
Description: NF18282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18282_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 425; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 18 - 446
Target Start/End: Complemental strand, 3658802 - 3658374
Alignment:
| Q |
18 |
caaaatgcaaagaagactctaaatcttgcatacaagcagacagcaagcaactattggtgatgtatttagcactttatgtcacagccctcggcactggcgg |
117 |
Q |
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| T |
3658802 |
caaaatgcaaagaagactctaaatcttgcatacaagcagacagcaagcaactattggtgatgtatttagcactttatatcacagccctcggcactggcgg |
3658703 |
T |
|
| Q |
118 |
tctaaaatctagtgtctctggctttggttccgatcaatttgatgattcagatgaccaagaaaagaagggtatgattaaatttttcagctggttctatttt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3658702 |
tctaaaatctagtgtctctggctttggttccgatcaatttgatgattcagatgaccaagaaaagaagggtatgattaaatttttcagctggttctatttt |
3658603 |
T |
|
| Q |
218 |
ttcgtaagcatagggtctttggcagcagtgactgttcttgtgtacatacaagataaccaaggtagaggttggggttacggtatttgtgcggtcgcaattg |
317 |
Q |
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| T |
3658602 |
ttcgtaagcatagggtctttggcagcagtgactgttcttgtgtacatacaagataaccaaggtagaggttggggttacggtatttgtgcggtcgcaattg |
3658503 |
T |
|
| Q |
318 |
tggttgcgctccttgttttcttgtccggtacccgcaagtaccggatcaagcaacttgtcggtagtcctttgactcagattgcggtcgtgtttgtggctgc |
417 |
Q |
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| T |
3658502 |
tggttgcgctccttgttttcttgtccggtacccgcaagtaccggatcaagcaacttgtcggtagtcctttgactcagattgcggtcgtgtttgtggctgc |
3658403 |
T |
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| Q |
418 |
ttggaggaagagacacatgcaattgccct |
446 |
Q |
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| T |
3658402 |
ttggaggaagagacacatgcaattgccct |
3658374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 82 - 444
Target Start/End: Complemental strand, 3646305 - 3645943
Alignment:
| Q |
82 |
tttagcactttatgtcacagccctcggcactggcggtctaaaatctagtgtctctggctttggttccgatcaatttgatgattcagatgaccaagaaaag |
181 |
Q |
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|||||| ||||||||||| || || ||||| || ||| ||||||| |||||| ||||||||||||| ||||||||||||| | | ||| | |||| ||| |
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| T |
3646305 |
tttagcgctttatgtcactgcacttggcacagggggtttaaaatccagtgtccctggctttggttcagatcaatttgatgctactgataaagaagagaag |
3646206 |
T |
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| Q |
182 |
aagggtatgattaaatttttcagctggttctattttttcgtaagcatagggtctttggcagcagtgactgttcttgtgtacatacaagataaccaaggta |
281 |
Q |
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|| |||| |||||||| ||| |||| || || |||||| | |||| ||| | || ||||| || ||||| |||||||||||| | || |||| |
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| T |
3646205 |
aaacatatggttaaatttctcaattggtattacttcatcgtaaacctaggatctcttatggcggtgacggtccttgtttacatacaagatcatcagggta |
3646106 |
T |
|
| Q |
282 |
gaggttggggttacggtatttgtgcggtcgcaattgtggttgcgctccttgttttcttgtccggtacccgcaagtaccggatcaagcaacttgtcggtag |
381 |
Q |
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||| ||||||||| ||||| ||||| | |||||| | || || |||| || |||| || ||| | ||||| ||| |||| ||| || ||||| |
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| T |
3646105 |
gagattggggttatggtatatgtgcttgttctattgtgctagcacttgttgtgtttttgtttggaacctgtaagtatcggtacaagaaaccggtaggtag |
3646006 |
T |
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| Q |
382 |
tcctttgactcagattgcggtcgtgtttgtggctgcttggaggaagagacacatgcaattgcc |
444 |
Q |
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||| ||||||||||||||||| ||||||||||| |||||||||||||| ||| |||||||||| |
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| T |
3646005 |
tcccttgactcagattgcggtagtgtttgtggccgcttggaggaagaggcacttgcaattgcc |
3645943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 377 - 429
Target Start/End: Original strand, 41873045 - 41873097
Alignment:
| Q |
377 |
ggtagtcctttgactcagattgcggtcgtgtttgtggctgcttggaggaagag |
429 |
Q |
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| T |
41873045 |
ggtagtcctttgactcagattgcagtggtttatgtggctgcttggaggaagag |
41873097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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