View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18282_low_12 (Length: 353)
Name: NF18282_low_12
Description: NF18282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18282_low_12 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 18 - 337
Target Start/End: Complemental strand, 155306 - 154987
Alignment:
| Q |
18 |
catccgtcaaaggaggctcatcaactactggaaatccgtgatgttctgtcactttcaaagcgtgcaatatattccccactttttcgatcccacaaaaaga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
155306 |
catccgtcaaaggaggctcatcaactactggaaatccgtgatgttctgtcactttcaaagcgtgcaatatattccccactttttcgatcccacaaaaaga |
155207 |
T |
|
| Q |
118 |
aaacagtggaccagaaacaacatcccctgcaactaaattcctcatgtatggctctgcatgtgcttccatataaggtagtcccttcaacgccacaatctga |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
155206 |
aaacagtggaccagaaacaacatcccctgcaactaaattcctcatgtatggctctgcatgtgcttccatataaggtagtcccttcaacgccacaatctga |
155107 |
T |
|
| Q |
218 |
tcataaacacctttgttaaaacaatcagccactgtcttagaaatgaggagaaccaacatgaccaatggtagcatcaacaagttattagtgagttcaagaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
155106 |
tcataaacacctttgttaaaacaatcagccactgtcttagaaatgaggagaaccaacatgaccaatggtagcatcaacaagttattagtgagttcaagaa |
155007 |
T |
|
| Q |
318 |
gtatgacacatagagaaact |
337 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
155006 |
gtatgacacatagagaaact |
154987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 8e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 65 - 327
Target Start/End: Original strand, 56469295 - 56469557
Alignment:
| Q |
65 |
gtcactttcaaagcgtgcaatatattccccactttttcgatcccacaaaaagaaaacagtggaccagaaacaacatcccctgcaactaaattcctcatgt |
164 |
Q |
| |
|
||||| || |||| ||||| ||||||||||||||||| || ||| | || | |||||||||||||||||||||||| || |||||||||| |||||||| |
|
|
| T |
56469295 |
gtcacctttaaagtgtgcacaatattccccactttttcaataccagagaatgtaaacagtggaccagaaacaacatcaccggcaactaaatgcctcatgt |
56469394 |
T |
|
| Q |
165 |
atggctctgcatgtgcttccatataaggtagtcccttcaacgccacaatctgatcataaacacctttgttaaaacaatcagccactgtcttagaaatgag |
264 |
Q |
| |
|
| || |||||||| |||||| |||||| | ||||||| |||| || ||||||||||||||||||||||||||||| ||||| | ||| || ||||| |
|
|
| T |
56469395 |
acggttctgcatgcacttccaaataaggcaaccccttcatttccactatttgatcataaacacctttgttaaaacaatctgccacagactttgagatgag |
56469494 |
T |
|
| Q |
265 |
gagaaccaacatgaccaatggtagcatcaacaagttattagtgagttcaagaagtatgacaca |
327 |
Q |
| |
|
|||||| |||||||||||||||||||| | | ||| ||||| ||||| ||||| |||||||| |
|
|
| T |
56469495 |
gagaactaacatgaccaatggtagcatgaggaggttgttagtaagttcgagaagaatgacaca |
56469557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 83 - 198
Target Start/End: Original strand, 24329119 - 24329234
Alignment:
| Q |
83 |
aatatattccccactttttcgatcccacaaaaagaaaacagtggaccagaaacaacatcccctgcaactaaattcctcatgtatggctctgcatgtgctt |
182 |
Q |
| |
|
||||||||||| || |||||||| ||| |||| | | || |||||| || |||||||| | || | ||| |||||||||||| || || |||||||||| |
|
|
| T |
24329119 |
aatatattcccaaccttttcgatgccagaaaaggtcatcaatggacccgagacaacatcacgtgtagctatattcctcatgtaaggttcggcatgtgctt |
24329218 |
T |
|
| Q |
183 |
ccatataaggtagtcc |
198 |
Q |
| |
|
||| |||||| ||||| |
|
|
| T |
24329219 |
ccaaataaggaagtcc |
24329234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University