View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18282_low_14 (Length: 334)
Name: NF18282_low_14
Description: NF18282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18282_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 16 - 327
Target Start/End: Original strand, 3880300 - 3880610
Alignment:
| Q |
16 |
aatagtgggggtagatcccgtagcaaaatgaaacatcgtgaaaggaaagcatagttcacaatcttttctctttgatagtgaagattgctcgttagttact |
115 |
Q |
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| T |
3880300 |
aatagtgggggtagatcccgtagcaaaatgaaacatcgtgaaaggaaagtatagttcacaatcttttctctttgatagtgaagattgctcgttagttact |
3880399 |
T |
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| Q |
116 |
aaatttgtagattcagaagtttaaacactagggaaagtcaaaatggtgaatttagcgcacaaaagttcttgtggtttttgttgcggtcatcatggttttc |
215 |
Q |
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| T |
3880400 |
aaatttgtagattcagaagtttaaacactaaggaaagtcaaaatgatgaatttagcgcacaaaagttcttgtggtttttgttgcggtcgtcatgattttc |
3880499 |
T |
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| Q |
216 |
atgaagatcctttgtatttgacataatgaatcctctgtagttttgtttccctcttcttaaaataagcttttgtttgtcattattattatctgaatcaaac |
315 |
Q |
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| T |
3880500 |
atgaagatcctttgtatttgacataatgaatccgctgtagttttgtttccctcttc-taaaataagcttttgtttgtcattattattatctgaatcaaac |
3880598 |
T |
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| Q |
316 |
cagtgatgatgt |
327 |
Q |
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| T |
3880599 |
cagtgatgatgt |
3880610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 304
Target Start/End: Original strand, 3881442 - 3881534
Alignment:
| Q |
211 |
ttttcatgaagatcctttgtatttgacataatgaatc-ctctgtag-ttttgtttccctcttcttaaaataagcttttgtttgtcattattattat |
304 |
Q |
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| T |
3881442 |
ttttcttgaagatactttgtatctggcataatgaatatctctattggttttgtttcc---ttcttaaaataagctcttgtttgttattattattat |
3881534 |
T |
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