View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18282_low_16 (Length: 328)

Name: NF18282_low_16
Description: NF18282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18282_low_16
NF18282_low_16
[»] chr5 (1 HSPs)
chr5 (3-296)||(19444352-19444656)
[»] chr3 (3 HSPs)
chr3 (12-101)||(6455376-6455465)
chr3 (12-101)||(6761392-6761481)
chr3 (95-168)||(6455470-6455545)
[»] chr4 (1 HSPs)
chr4 (112-181)||(10119733-10119802)
[»] chr7 (2 HSPs)
chr7 (107-174)||(9865791-9865858)
chr7 (131-229)||(9406695-9406791)
[»] chr2 (1 HSPs)
chr2 (111-173)||(39527428-39527490)


Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 3 - 296
Target Start/End: Original strand, 19444352 - 19444656
Alignment:
Q  3 tatacttcaatatgaataatacttaaatagtaataatatcaatggtcaacatttacaagcatcttcataacttttcatcaagttatacatcgtcatt--- 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||       
T  19444352 tatacttcaatatgaataatacttaaatagtaataatatcaatggtcagcatttacaagcatcttcataacttttcatcaagttatacatcgtcatttac 19444451  T
Q  100 --------tacacatcacacaccatgttcaaatatcaccacttatatgcaaatgtgcttcattcctatcatctatatgcatgtcgataccgatttctgct 191  Q
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||    
T  19444452 ataccatttacacatcacacaccatgttcaaatatcaccacttatatgcaaatgtgcttcattcctatcatctatatgcatgtcggtatcgatttctgct 19444551  T
Q  192 catcattttattgtttgttagagttttattactgaacataaatacaatcgtcattcatcattttcatataatatgatatgatgcaagaagaaagactcat 291  Q
     |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  19444552 gatcattttattgtttgttagagttttattactgagcatatatacaatcgtcattcatcattttcatataatatgatatgatgcaagaagaaagactcgt 19444651  T
Q  292 taaat 296  Q
    |||||    
T  19444652 taaat 19444656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 101
Target Start/End: Original strand, 6455376 - 6455465
Alignment:
Q  12 atatgaataatacttaaatagtaataatatcaatggtcaacatttacaagcatcttcataacttttcatcaagttatacatcgtcattta 101  Q
    ||||||||||||   |||||||||||| |||||| |||||||||||||  ||||||||||| || ||||||||||||||||| |||||||    
T  6455376 atatgaataatataaaaatagtaataacatcaatcgtcaacatttacagacatcttcataatttctcatcaagttatacatcatcattta 6455465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 101
Target Start/End: Complemental strand, 6761481 - 6761392
Alignment:
Q  12 atatgaataatacttaaatagtaataatatcaatggtcaacatttacaagcatcttcataacttttcatcaagttatacatcgtcattta 101  Q
    ||||||||||||   |||||||||||| |||||| ||||||||||||   ||||||||||| || ||||||||||||||||| |||||||    
T  6761481 atatgaataatataaaaatagtaataacatcaatcgtcaacatttacggacatcttcataatttctcatcaagttatacatcatcattta 6761392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 168
Target Start/End: Original strand, 6455470 - 6455545
Alignment:
Q  95 tcatttacacatcaca--caccatgttcaaatatcaccacttatatgcaaatgtgcttcattcctatcatctatat 168  Q
    ||||||||||||||||  ||||| ||||||| |||| || ||||||||| |||  |||||||||||||| ||||||    
T  6455470 tcatttacacatcacatacaccaagttcaaacatcatcagttatatgcagatgcacttcattcctatcagctatat 6455545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 112 - 181
Target Start/End: Complemental strand, 10119802 - 10119733
Alignment:
Q  112 accatgttcaaatatcaccacttatatgcaaatgtgcttcattcctatcatctatatgcatgtcgatacc 181  Q
    |||||||||||| |||| ||||||||||||||||  ||||||||||| ||||||||||||||||| ||||    
T  10119802 accatgttcaaacatcatcacttatatgcaaatgcacttcattcctaacatctatatgcatgtcggtacc 10119733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 107 - 174
Target Start/End: Complemental strand, 9865858 - 9865791
Alignment:
Q  107 cacacaccatgttcaaatatcaccacttatatgcaaatgtgcttcattcctatcatctatatgcatgt 174  Q
    ||||| ||| ||| ||||||||||| |||| ||||||| | |||||||||||| ||||||||||||||    
T  9865858 cacactccaagtttaaatatcaccatttatgtgcaaatctacttcattcctataatctatatgcatgt 9865791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 229
Target Start/End: Original strand, 9406695 - 9406791
Alignment:
Q  131 acttatatgcaaatgtgcttcattcctatcatctatatgcatgtcgataccgatttctgctcatcattttattgtttgttagagttttattactgaaca 229  Q
    |||||||||||| ||  |||||||||||||||||||||||||| | |||||| ||| |  ||||||||||| ||| ||||| |||| |||||| |||||    
T  9406695 acttatatgcaa-tgcacttcattcctatcatctatatgcatgacaataccggttt-ttatcatcattttaatgtatgttaaagttgtattaccgaaca 9406791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 173
Target Start/End: Complemental strand, 39527490 - 39527428
Alignment:
Q  111 caccatgttcaaatatcaccacttatatgcaaatgtgcttcattcctatcatctatatgcatg 173  Q
    ||||||||||||| |||| || ||| |||||||||  ||||||| |||||| |||||||||||    
T  39527490 caccatgttcaaacatcatcatttacatgcaaatgcacttcatttctatcacctatatgcatg 39527428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University