View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18282_low_17 (Length: 326)
Name: NF18282_low_17
Description: NF18282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18282_low_17 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 298688 - 298452
Alignment:
| Q |
1 |
cttaaattctgcatctgaaagatcacttgaggcaattacaagagtccttaaaccttggaagaatattcactcaaatgattctgagttggatgcttaattc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
298688 |
cttaaattctgcatctgaaagatcacttgaggcaattacaagagtccttaaaccttggaagaatattcactcaaatgact-----ttggatgcttaattc |
298594 |
T |
|
| Q |
101 |
aaatgttgcttgcatagtcatttgctaaaatgctaaactttgaaacgtcagcacttttaacaaacattgtcgggaaatccaatacagcatacatcctctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
298593 |
aaatgttgcttgcatagtcatttgctaaaatgctaaactttgaaacgtcagcacttttaacaaacattgtcgggaaatccaatacagcatacatcctctt |
298494 |
T |
|
| Q |
201 |
ttgcactctatcaaactcatgcaggcccgatacgtccaacct |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
298493 |
ttgcactctatcaaactcatgcaggcccgatacgtccaacct |
298452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 300897 - 300752
Alignment:
| Q |
1 |
cttaaattctgcatctgaaagatcacttgaggcaattacaagagtccttaaaccttg-gaagaatattcactcaaatg-attctgagttggatgcttaat |
98 |
Q |
| |
|
||||||||||||||| ||||| || |||||||||||||||||||||||||||||||| || |||||||||||||||| || ||||||||| ||||||| |
|
|
| T |
300897 |
cttaaattctgcatccgaaagttcccttgaggcaattacaagagtccttaaaccttgcaaataatattcactcaaatgaatgttgagttggaggcttaat |
300798 |
T |
|
| Q |
99 |
tcaaatgttgcttgcatagtcatttgctaaaatgctaaactttgaa |
144 |
Q |
| |
|
| |||||||||| |||||||||| ||||||||||||||| ||||| |
|
|
| T |
300797 |
gctaatgttgcttacatagtcattagctaaaatgctaaacattgaa |
300752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 256 - 308
Target Start/End: Complemental strand, 298382 - 298330
Alignment:
| Q |
256 |
aacaacttaaaaagtccaacattcattacaaataataatacagcatgtgatct |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
298382 |
aacaacttaaaaagtccaacattcattacaaataataatacagcatgtgatct |
298330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 239
Target Start/End: Original strand, 27465867 - 27465915
Alignment:
| Q |
191 |
acatcctcttttgcactctatcaaactcatgcaggcccgatacgtccaa |
239 |
Q |
| |
|
|||| |||||| |||| |||||||||||||||| |||| |||||||||| |
|
|
| T |
27465867 |
acattctctttcgcacgctatcaaactcatgcaagcccaatacgtccaa |
27465915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University