View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18282_low_19 (Length: 290)
Name: NF18282_low_19
Description: NF18282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18282_low_19 |
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| [»] scaffold0390 (1 HSPs) |
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| [»] scaffold0786 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 3005028 - 3004753
Alignment:
| Q |
1 |
ccgcaacacatcaccactgccaacacagttgaaccacatcagtctgttgtctgaaaaccgcaccagtcacaaccttaaagctttcgtctcact---aacc |
97 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3005028 |
ccgcagcacatcaccactgccaacacagttgaaccacatcagtctgttgtccgaaaaccgcaccagtcacaaccttaaagctttcgtctcacttataacc |
3004929 |
T |
|
| Q |
98 |
acagacaactttctattccattgtcttctgaataagttttacctgaaacaaaaacataattttctataaaattagcatctccaaaggaccatctcccaat |
197 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
3004928 |
acagacaactttctattccattgtcttttgaataagttttacctgaaacaaaaacataattttctataaaattagcatctccaaaggaccacctcccaat |
3004829 |
T |
|
| Q |
198 |
atttatta-gatatgtacatcatcgtcatcacataaagtagtatattgatttgatatcccatggagacacttcttt |
272 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3004828 |
atttattaggatatgtacatcatcgtcatcacataaagtagtatattgatttgatatcccatggagacacttcttt |
3004753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 54655027 - 54654755
Alignment:
| Q |
1 |
ccgcaacacatcaccactgccaacacagttgaaccacatcagtctgttgtctgaaaaccgcaccagtcacaaccttaaagctttcgtctcactaaccaca |
100 |
Q |
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||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
54655027 |
ccgcagcacatcaccactgccaacacagttgaaccacaacagtctgctgtctgaaaaccgcactagtcacaaccttaaagctttcgtctcactaaccaca |
54654928 |
T |
|
| Q |
101 |
gacaactttctattccattgtcttctgaataagttttacctgaaacaaaaacataattttctataaaattagcatctccaaaggaccatctcccaatatt |
200 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |
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| T |
54654927 |
gacagctttgtattccattgtcttctgaataagttttacctgaaacaaaaacataattttttataaaattagcatctccaaaggaccacctcccaatatt |
54654828 |
T |
|
| Q |
201 |
tatta-gatatgtacatcatcgtcatcacataaagtagtatattgatttgatatcccatggagacacttcttt |
272 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54654827 |
tattaggatatgtacatcatcgtcatcacataaagtagtatattgatttgatatcccatggagacacttcttt |
54654755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 171 - 273
Target Start/End: Original strand, 1065539 - 1065642
Alignment:
| Q |
171 |
agcatctccaaaggaccatctcccaatatttattag-atatgtacatcatcgtcatcacataaagtagtatattgatttgatatcccatggagacacttc |
269 |
Q |
| |
|
|||||||||| | ||||| |||| |||||| ||||| ||||||| || || |||||||| ||| |||||||||||||| |||||||| |||||||||| |
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| T |
1065539 |
agcatctccacaagaccacctccaaatattaattaggatatgtatatagtcatcatcacaaaaaatagtatattgatttcatatcccaaagagacacttc |
1065638 |
T |
|
| Q |
270 |
tttt |
273 |
Q |
| |
|
|||| |
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|
| T |
1065639 |
tttt |
1065642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 107 - 272
Target Start/End: Complemental strand, 51649252 - 51649086
Alignment:
| Q |
107 |
tttctattccattgtcttctgaataagttttacctgaaacaaaaacataattttctataaaattagcatctccaaaggaccatctcccaatatttatta- |
205 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||| |||| |
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| T |
51649252 |
tttctatgtcattgtcttctaaataagttttacctgaaacaaaaacataattttctataaaatttgcatctccaaaggaccacctctaaatattaattag |
51649153 |
T |
|
| Q |
206 |
gatatgtac---atcatcgtcatcacataaagtagtatattgatttgatatcccatggagacacttcttt |
272 |
Q |
| |
|
||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
51649152 |
gatatgtacatgatcatcatcatcacata---tagtatattgatttgatatcccatggagacacttcttt |
51649086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 107 - 272
Target Start/End: Complemental strand, 20604611 - 20604441
Alignment:
| Q |
107 |
tttctattccattgtcttctgaataagttttacctgaaacaaaaacataattttctataaaattagcatctccaaaggaccatctcccaatatttatta- |
205 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||| |||| |
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| T |
20604611 |
tttctatgccattgtcttctaaataagttttacctgaaacaaaaacataattttctataaaatttgcatctccaaaggaccacctctaaatattaattag |
20604512 |
T |
|
| Q |
206 |
gatatgtac-------atcatcgtcatcacataaagtagtatattgatttgatatcccatggagacacttcttt |
272 |
Q |
| |
|
||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||| ||||||| |
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| T |
20604511 |
gatatgtacatgcatgatcatcatcatcacata---tagtatattgatttgatatcccatggagacgcttcttt |
20604441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 107 - 182
Target Start/End: Complemental strand, 29310880 - 29310805
Alignment:
| Q |
107 |
tttctattccattgtcttctgaataagttttacctgaaacaaaaacataattttctataaaattagcatctccaaa |
182 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
29310880 |
tttctattccattgtcttttaaataagttttacctgaaacaaaaacataattttctataaaatttgcatctccaaa |
29310805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 107 - 273
Target Start/End: Original strand, 30847932 - 30848098
Alignment:
| Q |
107 |
tttctattccattgtcttctgaataagttttacctgaaacaaaaacataattttctataaaattagcatctccaaaggaccatctcccaatatttatta- |
205 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||| || ||| |||| |
|
|
| T |
30847932 |
tttctattccattgtcttctaaattagttttacctgaaacaaaaacataattttctataaaatttgc-tctccaaaggaccacctccaaaaattaattag |
30848030 |
T |
|
| Q |
206 |
gatatgtacatcatc---gtcatcacataaagtagtatattgatttgatatcccatggagacacttctttt |
273 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
30848031 |
gatatgtacatcatcataatcatcacata---tagtatattgatttgatatcctgtggagacacttctttt |
30848098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0390 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0390
Description:
Target: scaffold0390; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 166 - 272
Target Start/End: Complemental strand, 1123 - 1016
Alignment:
| Q |
166 |
aaattagcatctccaaaggaccatctcccaatatttattag-atatgtacatcatcgtcatcacataaagtagtatattgatttgatatcccatggagac |
264 |
Q |
| |
|
|||| |||||||||||||||||| |||| |||||| ||||| ||||||| || || |||||||| ||||| |||||||||||| |||||||| ||||| |
|
|
| T |
1123 |
aaataagcatctccaaaggaccacctccaaatattaattaggatatgtatatagtcatcatcacaaaaagttgtatattgatttcatatcccaaagagac |
1024 |
T |
|
| Q |
265 |
acttcttt |
272 |
Q |
| |
|
|||||||| |
|
|
| T |
1023 |
acttcttt |
1016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 166 - 272
Target Start/End: Original strand, 22140157 - 22140264
Alignment:
| Q |
166 |
aaattagcatctccaaaggaccatctcccaatatttattag-atatgtacatcatcgtcatcacataaagtagtatattgatttgatatcccatggagac |
264 |
Q |
| |
|
|||| |||||||||||||||||| |||| |||||| ||||| ||||||| || || |||||||| ||||| |||||||||||| |||||||| ||||| |
|
|
| T |
22140157 |
aaataagcatctccaaaggaccacctccaaatattaattaggatatgtatatagtcatcatcacaaaaagttgtatattgatttcatatcccaaagagac |
22140256 |
T |
|
| Q |
265 |
acttcttt |
272 |
Q |
| |
|
|||||||| |
|
|
| T |
22140257 |
acttcttt |
22140264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0786 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0786
Description:
Target: scaffold0786; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 166 - 272
Target Start/End: Complemental strand, 2591 - 2484
Alignment:
| Q |
166 |
aaattagcatctccaaaggaccatctcccaatatttattag-atatgtacatcatcgtcatcacataaagtagtatattgatttgatatcccatggagac |
264 |
Q |
| |
|
|||| |||||||||||||||||| |||| || ||| ||||| ||||||| || || |||||||| ||||| |||||||||||| |||||||| ||||| |
|
|
| T |
2591 |
aaataagcatctccaaaggaccacctccaaagattaattaggatatgtatatagtcatcatcacaaaaagttgtatattgatttcatatcccaatgagac |
2492 |
T |
|
| Q |
265 |
acttcttt |
272 |
Q |
| |
|
|||||||| |
|
|
| T |
2491 |
acttcttt |
2484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 149 - 188
Target Start/End: Complemental strand, 31449326 - 31449287
Alignment:
| Q |
149 |
aaacataattttctataaaattagcatctccaaaggacca |
188 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31449326 |
aaacataattttctataaaattagcatctccaaaggacca |
31449287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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