View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18282_low_2 (Length: 760)
Name: NF18282_low_2
Description: NF18282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18282_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 590; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 590; E-Value: 0
Query Start/End: Original strand, 18 - 742
Target Start/End: Original strand, 9519199 - 9519926
Alignment:
| Q |
18 |
acttaacacttatttgtcatgcaacaattttgaaaatataaaaagcacataatgtggttattttttcttctaagaatcggaaggtggaggagattgtaga |
117 |
Q |
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| T |
9519199 |
acttaacacttatttgtcatgcaacaattttgaaaatatgaaaagcgcataatgtggttattttttcttctaagaatcggaaggtggaggagattgtaga |
9519298 |
T |
|
| Q |
118 |
gactatcaaaatttcctcttggagatagtttattgtttgaaaaatatggcgtccgtgtttatattatgacctcttctttgttaaatttcttgaattgagt |
217 |
Q |
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|||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9519299 |
gactatcaaaatttcctctttgagatagtttattgttaaataaatatggcgtccgtgtttatattatgacctcttctttgttaaatttcttgaattgagt |
9519398 |
T |
|
| Q |
218 |
tgtttgttttt-ggaggggttagtacaccttgtacttttttagggttgttcggttaagtgcactttgcacttctctcatcatctaataaattttgatgtt |
316 |
Q |
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| T |
9519399 |
tgtttgttttttggaggggttagtacaccttgtacttttttagggttgta-ggttaagttcactttgaacttctctcatcatctaataaatttttatgtt |
9519497 |
T |
|
| Q |
317 |
aaaaagaaa---taacatcccctacaaataaaccaccctaagattcaaaattctcccattttgaaaagaaaagtattatttgtacttatctcattttctt |
413 |
Q |
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||||| ||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
9519498 |
aaaaaaaaaaattaatatcccctgcaaataaaccaccctaagattcaaaattctcccattttgaaaagaaaagtactatttgtacttatctcattttctt |
9519597 |
T |
|
| Q |
414 |
taataatatttattttagagtnnnnnnncccttcacaatcgtctaattcttaaaaagagaaaaagtcgcccatatcgagagatagctctattatataaca |
513 |
Q |
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| T |
9519598 |
taataatatttattttaaagtaaaaaaacccttcacaaatgtctaattctttaaaagggaaacagtcgcccatatcgagagatagctctattatacaaca |
9519697 |
T |
|
| Q |
514 |
ccctaagtttttaatatttcgtttttaactctttttgaatcagttgtgctgattgcattagagactgagcttcaagaaaacggttgatttagggttctta |
613 |
Q |
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| T |
9519698 |
ccctaagtttttaatatttcgtttttaactctttttgaatcagttgtgctgattgcattagagaccgagcttcaagaaaacggttgatttagggttctta |
9519797 |
T |
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| Q |
614 |
agcttccattacaaaagatttgcacaaatggtattatgaaaacggttgaacaaaagataagtcttggcttcccacaaccaccttatttataatcctagag |
713 |
Q |
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| T |
9519798 |
agcttccattacaaaagatttgcacaaatggtattatgaaaacggttgaacaaaagataagtcttggcttcccacaaccaccttatttataatcctagag |
9519897 |
T |
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| Q |
714 |
ttttaacctaattaagattcgagtcagaa |
742 |
Q |
| |
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| T |
9519898 |
ttttaacctaattaagattcgagtcagaa |
9519926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 18 - 354
Target Start/End: Original strand, 9527509 - 9527848
Alignment:
| Q |
18 |
acttaacacttatttgtcatgcaacaattttgaaaatataaaaagcacataatgtggttattttt--tcttctaagaatcggaaggtggaggagattgta |
115 |
Q |
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|||||||||||||||||||||||||| |||||||||| | | ||||||| ||||||||| ||||| |||||||||||| |||||||||||||||||| | |
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| T |
9527509 |
acttaacacttatttgtcatgcaacacttttgaaaatttgagaagcacaaaatgtggttttttttcttcttctaagaattggaaggtggaggagattgaa |
9527608 |
T |
|
| Q |
116 |
gagactatcaaaatttcctcttggagatagtttattgtttgaaaaatatggcgtccgtg-tttatatt--atgacctcttctttgttaaatttcttgaat |
212 |
Q |
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| T |
9527609 |
gagaccatcaaaatttcctcttggagatggtttattgttag-aaaattggaggtttatgatttgtactcaaaaacattttctttatttagtttcttgaat |
9527707 |
T |
|
| Q |
213 |
tgagttgtttgtttttggaggggttagtacaccttgtac---ttttttagggttgttcggttaagtgcactttgcacttctctcatcatctaataaattt |
309 |
Q |
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| T |
9527708 |
tgggctgtttgtttttgg-cgggttagtaccccttgtactttttttttcgggttg-aaggttaagtgcactttgcatttctctcatcatataataaattt |
9527805 |
T |
|
| Q |
310 |
tgatgttaaaaagaaataacatcccctacaaataaaccaccctaa |
354 |
Q |
| |
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||| ||||||| ||||||||| |||| ||||||||||||||||| |
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| T |
9527806 |
tgaggttaaaa--aaataacattcccttcaaataaaccaccctaa |
9527848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 602 - 739
Target Start/End: Original strand, 9528805 - 9528942
Alignment:
| Q |
602 |
ttagggttcttaagcttccattacaaaagatttgcacaaatggtattatgaaaacggttgaacaaaagataagtcttggcttcccacaaccaccttattt |
701 |
Q |
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| T |
9528805 |
ttagggttctttagcttccattacaaaagatttgcacaaatggtattgtgaaaacggttgaacaaaagataagtcttggctgcctacgaccaccttattt |
9528904 |
T |
|
| Q |
702 |
ataatcctagagttttaacctaattaagattcgagtca |
739 |
Q |
| |
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|||| |||||||||||||||||| |||||| ||||||| |
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| T |
9528905 |
ataaccctagagttttaacctaaataagatccgagtca |
9528942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 358 - 568
Target Start/End: Original strand, 9528445 - 9528661
Alignment:
| Q |
358 |
tcaaaattctcccattttgaaaagaaaagtattatttgtacttatctcattttctttaataatatttattttagagtnnnnnnnc----ccttcacaatc |
453 |
Q |
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||||| || |||||||||||||||||||||| ||||||||| | ||||||| |||||||||||||| |||| || |||| ||| || |
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| T |
9528445 |
tcaaacttttcccattttgaaaagaaaagtactatttgtacctctctcattctctttaataatattcgttttggaaatataaaaaaaaaccttgacagtc |
9528544 |
T |
|
| Q |
454 |
gtctaattcttaaaaagag--aaaaagtcgcccatatcgagagatagctctattatataacaccctaagtttttaatatttcgtttttaactctttttga |
551 |
Q |
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| T |
9528545 |
gtctaattcttaaaaaaagggaaacaaccgcccatatcgagagatagctctattatacaacaccctaaatttttaatattttgtttttaactctttttga |
9528644 |
T |
|
| Q |
552 |
atcagttgtgctgattg |
568 |
Q |
| |
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| T |
9528645 |
ataagttgtgctgattg |
9528661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 367 - 408
Target Start/End: Original strand, 20399384 - 20399425
Alignment:
| Q |
367 |
tcccattttgaaaagaaaagtattatttgtacttatctcatt |
408 |
Q |
| |
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|||| ||||||||| | ||||||||||||||||||||||||| |
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| T |
20399384 |
tccccttttgaaaaaacaagtattatttgtacttatctcatt |
20399425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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