View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18282_low_24 (Length: 249)
Name: NF18282_low_24
Description: NF18282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18282_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 21549625 - 21549795
Alignment:
| Q |
1 |
aaaagggaggaagacctgctctaacaactttccagactcatgtattgcagcgtaaagataaagatcctgttgtcaaagagtgtttcattnnnnnnntcta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
21549625 |
aaaagggaggaagacctgctctaacaactttccagactcatgtatcgcagcgtaaagataaagatcctgttgtcaaagagtgtttcattaaaaaaatcta |
21549724 |
T |
|
| Q |
101 |
atacactccgccatggttatggttagtaatcataacaacatatccatcttttcattttaccatacatatac |
171 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21549725 |
atacaatccgccatggttatggttagtaatcataacaacatatccatcttttcattttaccatacatatac |
21549795 |
T |
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Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 113 - 171
Target Start/End: Original strand, 20361929 - 20361987
Alignment:
| Q |
113 |
atggttatggttagtaatcataacaacatatccatcttttcattttaccatacatatac |
171 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |
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| T |
20361929 |
atggttatggttagtaatcataacaacatacccatcttttcattttaccgtacatatac |
20361987 |
T |
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