View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18282_low_33 (Length: 204)
Name: NF18282_low_33
Description: NF18282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18282_low_33 |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 23 - 187
Target Start/End: Complemental strand, 46223499 - 46223335
Alignment:
| Q |
23 |
ggcattcacttgaagaggtcttctcccagaaacaataacaagtaataacacaccaaaactataaacatcagacttctctgttacatcactataaccattt |
122 |
Q |
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| T |
46223499 |
ggcattcacttgaagaggtcttctcccagaaacaataacaagtaataacacaccaaaactataaacatcagacttctctgttacatcactataaccattt |
46223400 |
T |
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| Q |
123 |
tcaggagcaacataaaaaacagttcctctcatacttggagtactactaatttcaccactcttatg |
187 |
Q |
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| T |
46223399 |
tcaggagcaacataaaaaacagttcctctcatacttggagtactactaatttcaccactcttatg |
46223335 |
T |
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Target: scaffold0007 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 126 - 169
Target Start/End: Original strand, 226599 - 226642
Alignment:
| Q |
126 |
ggagcaacataaaaaacagttcctctcatacttggagtactact |
169 |
Q |
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| T |
226599 |
ggagcaacataacaaacggttcctctcatacttggtgtactact |
226642 |
T |
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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 184
Target Start/End: Original strand, 12952763 - 12952825
Alignment:
| Q |
122 |
ttcaggagcaacataaaaaacagttcctctcatacttggagtactactaatttcaccactctt |
184 |
Q |
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| T |
12952763 |
ttcaggagcaatgtaacaaacagttcctctcatactcggtgtgctacttattccaccactctt |
12952825 |
T |
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