View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18282_low_4 (Length: 615)
Name: NF18282_low_4
Description: NF18282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18282_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 588; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 588; E-Value: 0
Query Start/End: Original strand, 10 - 597
Target Start/End: Original strand, 51845720 - 51846307
Alignment:
| Q |
10 |
gagatgaataaagtaagcagagatatatttgatgccgagatgagacggtttgggaggcttagaaaccgtaatattttggctcctttggcttaccattacc |
109 |
Q |
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| T |
51845720 |
gagatgaataaagtaagcagagatatatttgatgccgagatgagacggtttgggaggcttagaaaccgtaatattttggctcctttggcttaccattacc |
51845819 |
T |
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| Q |
110 |
gcagggaggagaagttatttgttactgaatacatgcctaaaggaagcttgttatatgtcttgcatggtaacgctgtcacattttatttcttttcctttaa |
209 |
Q |
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| T |
51845820 |
gcagggaggagaagttatttgttactgaatacatgcctaaaggaagcttgttatatgtcttgcatggtaacgctgtcacattttatttcttttcctttaa |
51845919 |
T |
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| Q |
210 |
tgagcttgttctatctcaaatttggtgcattcatgtgttattttatagtcatttatacacattcatgtgtaatgtttgttgtacaggtgatagaggaaca |
309 |
Q |
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| T |
51845920 |
tgagcttgttctatctcaaatttggtgcattcatgtgttattttatagtcatttatacacattcatgtgtaatgtttgttgtacaggtgatagaggaaca |
51846019 |
T |
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| Q |
310 |
agtcatgctgaactaaattggccaacacgtttaaagatagtgaaaggaattgcacgtggattgacatttctttatactgaatttgaatccgaagacctgc |
409 |
Q |
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| T |
51846020 |
agtcatgctgaactaaattggccaacacgtttaaagatagtgaaaggaattgcacgtggattgacatttctttatactgaatttgaatccgaagacctgc |
51846119 |
T |
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| Q |
410 |
cacatggaaacctcaaatcaagcaatatacttctagccgataattatgagccactcttaagtgactttgcatttcatccattaatcaactcaagtcatgc |
509 |
Q |
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| T |
51846120 |
cacatggaaacctcaaatcaagcaatatacttctagccgataattatgagccactcttaagtgactttgcatttcatccattaatcaactcaagtcatgc |
51846219 |
T |
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| Q |
510 |
aacacaaacaatgtttgcatacaaaactcctgattacgttctttaccaacatgtttcacagaaaaccgatgtttattgtctcggaatc |
597 |
Q |
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| T |
51846220 |
aacacaaacaatgtttgcatacaaaactcctgattacgttctttaccaacatgtttcacagaaaaccgatgtttattgtctcggaatc |
51846307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 412 - 597
Target Start/End: Complemental strand, 18627563 - 18627378
Alignment:
| Q |
412 |
catggaaacctcaaatcaagcaatatacttctagccgataattatgagccactcttaagtgactttgcatttcatccattaatcaactcaagtcatgcaa |
511 |
Q |
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| T |
18627563 |
catggaaacctcaaatcaagcaatgttctactaactgatgattatgagcctcttttaagtgactatgcttttcaaccactaatcaaccctagcattgcag |
18627464 |
T |
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| Q |
512 |
cacaaacaatgtttgcatacaaaactcctgattacgttctttaccaacatgtttcacagaaaaccgatgtttattgtctcggaatc |
597 |
Q |
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| T |
18627463 |
tgcaatcaatgtttgcatacaaaacaccggattacgttcaaaaccaaaagctttcgcagaaagccgatgtttattgtctcggaatc |
18627378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 37 - 178
Target Start/End: Complemental strand, 18628379 - 18628238
Alignment:
| Q |
37 |
tttgatgccgagatgagacggtttgggaggcttagaaaccgtaatattttggctcctttggcttaccattaccgcagggaggagaagttatttgttactg |
136 |
Q |
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| T |
18628379 |
tttgatgctgagatgagacagtttgggaggattagacatgctaatattttgactcctttggcttatcattatcgtcgagaggaaaagctttttgttactg |
18628280 |
T |
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| Q |
137 |
aatacatgcctaaaggaagcttgttatatgtcttgcatggta |
178 |
Q |
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| || | |||||||||||||||||||||||||||||| |||| |
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| T |
18628279 |
agtataagcctaaaggaagcttgttatatgtcttgcacggta |
18628238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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