View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18282_low_5 (Length: 578)

Name: NF18282_low_5
Description: NF18282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18282_low_5
NF18282_low_5
[»] chr4 (21 HSPs)
chr4 (19-560)||(1746981-1747522)
chr4 (249-334)||(35723373-35723457)
chr4 (284-328)||(40613443-40613487)
chr4 (373-560)||(6005819-6006005)
chr4 (284-323)||(8423740-8423779)
chr4 (284-342)||(20743300-20743358)
chr4 (284-334)||(36635311-36635361)
chr4 (243-303)||(44132627-44132685)
chr4 (284-328)||(7012059-7012103)
chr4 (250-328)||(22234880-22234957)
chr4 (284-328)||(23293008-23293052)
chr4 (251-322)||(38148716-38148785)
chr4 (284-334)||(903909-903959)
chr4 (284-322)||(22440622-22440660)
chr4 (286-323)||(23861455-23861492)
chr4 (279-320)||(30522932-30522973)
chr4 (284-320)||(16189710-16189746)
chr4 (298-334)||(17345451-17345487)
chr4 (286-334)||(20521873-20521921)
chr4 (284-328)||(24343500-24343544)
chr4 (286-318)||(34200295-34200327)
[»] chr7 (30 HSPs)
chr7 (251-334)||(32308107-32308188)
chr7 (250-328)||(19206043-19206119)
chr7 (243-334)||(6630895-6630984)
chr7 (284-328)||(29787391-29787435)
chr7 (250-327)||(30731031-30731104)
chr7 (285-334)||(11722121-11722170)
chr7 (257-324)||(5548673-5548738)
chr7 (260-334)||(20549778-20549850)
chr7 (264-334)||(22868029-22868097)
chr7 (284-326)||(23191891-23191933)
chr7 (284-334)||(26733291-26733341)
chr7 (284-334)||(27945028-27945078)
chr7 (257-333)||(22602707-22602781)
chr7 (244-328)||(24339635-24339717)
chr7 (287-328)||(28155563-28155604)
chr7 (284-328)||(24289813-24289857)
chr7 (284-328)||(25481895-25481939)
chr7 (288-334)||(10042924-10042970)
chr7 (257-334)||(21828402-21828477)
chr7 (284-334)||(22484012-22484062)
chr7 (284-322)||(32287485-32287523)
chr7 (289-334)||(25791640-25791685)
chr7 (250-334)||(26329372-26329454)
chr7 (245-313)||(35297657-35297723)
chr7 (286-335)||(35861950-35861999)
chr7 (292-328)||(1433447-1433483)
chr7 (284-316)||(2424619-2424651)
chr7 (288-328)||(2425759-2425799)
chr7 (288-328)||(5307253-5307293)
chr7 (245-328)||(23128646-23128727)
[»] chr6 (35 HSPs)
chr6 (244-336)||(10339109-10339200)
chr6 (260-337)||(19040336-19040411)
chr6 (244-337)||(26562673-26562764)
chr6 (260-334)||(7265593-7265665)
chr6 (257-334)||(9027165-9027240)
chr6 (284-334)||(9658866-9658916)
chr6 (243-334)||(16766684-16766773)
chr6 (250-328)||(5000616-5000692)
chr6 (285-339)||(7801179-7801233)
chr6 (286-328)||(9629376-9629418)
chr6 (290-328)||(20371138-20371176)
chr6 (257-321)||(9025491-9025553)
chr6 (284-333)||(17341686-17341735)
chr6 (243-334)||(9107353-9107442)
chr6 (288-328)||(10842525-10842565)
chr6 (291-334)||(5732539-5732582)
chr6 (250-328)||(8931592-8931668)
chr6 (286-328)||(7377972-7378014)
chr6 (284-334)||(7996400-7996450)
chr6 (284-334)||(8022351-8022401)
chr6 (284-334)||(12696311-12696361)
chr6 (284-334)||(13851723-13851773)
chr6 (288-334)||(17841615-17841661)
chr6 (284-334)||(19044451-19044501)
chr6 (286-320)||(30866168-30866202)
chr6 (285-326)||(6665208-6665249)
chr6 (244-324)||(10294104-10294182)
chr6 (284-337)||(13360394-13360447)
chr6 (284-337)||(31959143-31959196)
chr6 (284-321)||(32511688-32511725)
chr6 (250-334)||(34073337-34073419)
chr6 (284-328)||(7977852-7977896)
chr6 (284-320)||(31579247-31579283)
chr6 (288-328)||(33001315-33001355)
chr6 (284-328)||(34595127-34595171)
[»] chr8 (22 HSPs)
chr8 (250-328)||(24362192-24362268)
chr8 (250-326)||(11927076-11927150)
chr8 (284-328)||(34897078-34897122)
chr8 (288-328)||(39954305-39954345)
chr8 (244-334)||(15816113-15816201)
chr8 (260-334)||(31109518-31109590)
chr8 (286-328)||(31236601-31236643)
chr8 (260-328)||(13844596-13844662)
chr8 (284-321)||(18067956-18067993)
chr8 (286-334)||(13436988-13437036)
chr8 (286-334)||(22651963-22652011)
chr8 (288-328)||(27101508-27101548)
chr8 (284-352)||(30271313-30271381)
chr8 (284-323)||(4611532-4611571)
chr8 (260-334)||(4786338-4786410)
chr8 (250-328)||(11944658-11944734)
chr8 (284-326)||(7658458-7658500)
chr8 (286-328)||(27213540-27213582)
chr8 (284-334)||(29510326-29510376)
chr8 (260-315)||(3025557-3025610)
chr8 (250-321)||(25566841-25566910)
chr8 (286-334)||(36934657-36934705)
[»] chr1 (45 HSPs)
chr1 (244-326)||(25361881-25361961)
chr1 (284-334)||(2896143-2896193)
chr1 (284-334)||(36878448-36878498)
chr1 (249-321)||(34371714-34371783)
chr1 (257-328)||(9828037-9828106)
chr1 (284-328)||(10474999-10475043)
chr1 (250-336)||(10572579-10572663)
chr1 (284-334)||(398787-398837)
chr1 (284-334)||(17831553-17831603)
chr1 (286-334)||(6427337-6427385)
chr1 (257-328)||(7918208-7918277)
chr1 (284-328)||(12443482-12443526)
chr1 (286-337)||(1262868-1262919)
chr1 (284-334)||(5376522-5376572)
chr1 (280-334)||(6415019-6415073)
chr1 (251-328)||(17754304-17754379)
chr1 (244-317)||(44482234-44482305)
chr1 (286-335)||(609482-609531)
chr1 (284-337)||(19562643-19562696)
chr1 (284-328)||(113292-113336)
chr1 (284-320)||(10233254-10233290)
chr1 (284-324)||(25098577-25098617)
chr1 (284-328)||(34298429-34298473)
chr1 (287-334)||(9709807-9709854)
chr1 (284-323)||(26238134-26238173)
chr1 (284-335)||(27471588-27471639)
chr1 (286-337)||(38078685-38078736)
chr1 (260-326)||(39953146-39953210)
chr1 (284-326)||(5898288-5898330)
chr1 (280-334)||(9103627-9103681)
chr1 (284-322)||(20157372-20157410)
chr1 (284-334)||(38503307-38503357)
chr1 (284-334)||(40285676-40285726)
chr1 (288-326)||(41877496-41877534)
chr1 (293-334)||(9690303-9690344)
chr1 (260-328)||(29163381-29163447)
chr1 (284-325)||(31015039-31015080)
chr1 (285-334)||(36905984-36906033)
chr1 (284-321)||(40181871-40181908)
chr1 (284-328)||(1486731-1486775)
chr1 (284-328)||(13436451-13436495)
chr1 (284-320)||(19909298-19909334)
chr1 (284-328)||(21378571-21378615)
chr1 (288-328)||(21530682-21530722)
chr1 (257-328)||(34712380-34712449)
[»] chr5 (30 HSPs)
chr5 (243-343)||(3966481-3966579)
chr5 (286-352)||(30098295-30098361)
chr5 (286-362)||(19737506-19737582)
chr5 (284-328)||(28588696-28588740)
chr5 (284-327)||(27932229-27932272)
chr5 (244-334)||(39698528-39698616)
chr5 (288-334)||(27144450-27144496)
chr5 (289-334)||(17123035-17123080)
chr5 (286-334)||(31084310-31084358)
chr5 (287-334)||(2436909-2436956)
chr5 (216-334)||(6035470-6035585)
chr5 (284-334)||(6247609-6247659)
chr5 (284-334)||(6326319-6326369)
chr5 (288-334)||(14674256-14674302)
chr5 (288-326)||(19579696-19579734)
chr5 (284-334)||(21191078-21191128)
chr5 (284-321)||(6471911-6471948)
chr5 (286-327)||(9449463-9449504)
chr5 (284-337)||(21576767-21576820)
chr5 (287-324)||(26716141-26716178)
chr5 (287-324)||(26985881-26985918)
chr5 (260-320)||(30502388-30502446)
chr5 (260-320)||(30542731-30542789)
chr5 (247-323)||(32766930-32767004)
chr5 (256-320)||(36838544-36838606)
chr5 (284-336)||(4344727-4344779)
chr5 (259-334)||(11685926-11685999)
chr5 (284-328)||(34879343-34879387)
chr5 (288-328)||(35017030-35017070)
chr5 (296-328)||(38816729-38816761)
[»] chr2 (23 HSPs)
chr2 (284-328)||(21616755-21616799)
chr2 (284-335)||(21782840-21782891)
chr2 (251-321)||(44860320-44860388)
chr2 (289-334)||(31284035-31284080)
chr2 (284-324)||(37411266-37411306)
chr2 (244-322)||(18889575-18889651)
chr2 (284-334)||(23718013-23718063)
chr2 (284-334)||(24105685-24105735)
chr2 (284-326)||(28677904-28677946)
chr2 (284-352)||(24894357-24894426)
chr2 (262-334)||(31808064-31808134)
chr2 (284-324)||(18276518-18276558)
chr2 (284-326)||(10535781-10535823)
chr2 (286-328)||(18420458-18420500)
chr2 (284-334)||(21374721-21374771)
chr2 (284-334)||(30404872-30404922)
chr2 (250-324)||(36409619-36409689)
chr2 (286-334)||(896198-896246)
chr2 (284-328)||(19573971-19574015)
chr2 (279-335)||(35447904-35447960)
chr2 (243-334)||(36756327-36756416)
chr2 (286-334)||(37558964-37559012)
chr2 (284-328)||(42832298-42832342)
[»] scaffold0004 (1 HSPs)
scaffold0004 (284-334)||(92794-92844)
[»] chr3 (38 HSPs)
chr3 (284-336)||(4987313-4987365)
chr3 (249-328)||(8039824-8039901)
chr3 (284-328)||(8383250-8383294)
chr3 (259-334)||(26290358-26290431)
chr3 (280-355)||(8412963-8413038)
chr3 (286-328)||(5407271-5407313)
chr3 (284-333)||(10690284-10690333)
chr3 (284-337)||(10954936-10954989)
chr3 (260-328)||(49505154-49505220)
chr3 (286-334)||(5441055-5441103)
chr3 (260-323)||(7928448-7928509)
chr3 (284-328)||(12704000-12704044)
chr3 (284-328)||(34307802-34307846)
chr3 (286-334)||(40052319-40052367)
chr3 (279-334)||(2620070-2620125)
chr3 (287-334)||(9800027-9800074)
chr3 (257-323)||(11313797-11313861)
chr3 (284-327)||(14979175-14979218)
chr3 (244-328)||(25064902-25064982)
chr3 (284-334)||(1438791-1438841)
chr3 (284-334)||(21479105-21479155)
chr3 (284-334)||(21720751-21720801)
chr3 (244-328)||(14209106-14209188)
chr3 (287-324)||(24633763-24633800)
chr3 (250-334)||(28678290-28678372)
chr3 (284-337)||(32429402-32429455)
chr3 (284-328)||(4990989-4991033)
chr3 (284-328)||(11493383-11493427)
chr3 (284-328)||(11610514-11610558)
chr3 (255-334)||(11665931-11666008)
chr3 (286-334)||(14829677-14829724)
chr3 (284-328)||(16192772-16192816)
chr3 (284-328)||(23870581-23870625)
chr3 (288-328)||(25074782-25074822)
chr3 (284-328)||(26508103-26508147)
chr3 (284-328)||(28917994-28918038)
chr3 (288-324)||(32804566-32804602)
chr3 (284-328)||(34910310-34910354)
[»] scaffold0036 (1 HSPs)
scaffold0036 (250-324)||(9737-9809)
[»] scaffold1528 (1 HSPs)
scaffold1528 (251-328)||(1028-1103)
[»] scaffold0306 (1 HSPs)
scaffold0306 (284-334)||(13387-13437)
[»] scaffold0152 (1 HSPs)
scaffold0152 (284-334)||(21890-21940)
[»] scaffold0103 (1 HSPs)
scaffold0103 (284-334)||(51798-51848)
[»] scaffold0223 (1 HSPs)
scaffold0223 (252-328)||(20165-20239)
[»] scaffold0044 (1 HSPs)
scaffold0044 (284-328)||(53173-53217)
[»] scaffold0020 (1 HSPs)
scaffold0020 (257-328)||(135309-135378)
[»] scaffold0123 (1 HSPs)
scaffold0123 (251-321)||(44516-44584)
[»] scaffold0110 (1 HSPs)
scaffold0110 (286-337)||(28834-28885)
[»] scaffold0018 (1 HSPs)
scaffold0018 (287-334)||(192274-192321)
[»] scaffold0008 (1 HSPs)
scaffold0008 (250-320)||(263362-263430)
[»] scaffold0003 (1 HSPs)
scaffold0003 (244-334)||(241581-241669)
[»] scaffold0085 (1 HSPs)
scaffold0085 (286-328)||(26386-26428)
[»] scaffold0136 (1 HSPs)
scaffold0136 (244-324)||(3833-3911)
[»] scaffold0024 (1 HSPs)
scaffold0024 (243-319)||(68225-68299)
[»] scaffold0697 (1 HSPs)
scaffold0697 (288-328)||(1637-1677)
[»] scaffold0361 (1 HSPs)
scaffold0361 (284-328)||(14523-14567)
[»] scaffold0066 (1 HSPs)
scaffold0066 (284-328)||(33385-33429)
[»] scaffold0049 (1 HSPs)
scaffold0049 (284-320)||(63774-63810)
[»] scaffold0027 (1 HSPs)
scaffold0027 (284-328)||(46675-46719)


Alignment Details
Target: chr4 (Bit Score: 427; Significance: 0; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 19 - 560
Target Start/End: Complemental strand, 1747522 - 1746981
Alignment:
Q  19 attgcacctcaaattgctcaacctatccaaccaatccacttttcctgcaaagggattgcgagctttgtccaaagagattaagattacaatgtttacccct 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1747522 attgcacctcaaattgctcaacctatccaaccaatccacttttccagcaaagggattgcgagctttgtccaaagagattaagattacaatgtttacccct 1747423  T
Q  119 ctcacttgttccaactttgaccactctctccataaaaacgacctagttgttagctacgactacgatgacttcccttccttgaagaggttgacctgcaaca 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||| |||||    
T  1747422 ctcacttgttccaactttgaccactctctccataaaaacgacctagttgttagccacgactacaatgacttccctcccttgaagaggttgacctacaaca 1747323  T
Q  219 ctccttagattaagcgtgtccccatgtgttcgacaccaacacgacactgacacataaaat--------gttaaactgaattatgtgattttctcaattta 310  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||         |||||||||||||||||||||||||||||||    
T  1747322 ctccttagattaggcgtgtccccatgtgttcgacaccaacacgacactgacacatataataacgtataattaaactgaattatgtgattttctcaattta 1747223  T
Q  311 ttagcggtgtcggcgtgtaagtgttcggtgtccttgcttcattgattgaaactagnnnnnnnctttgaaaatgccaacttagattttctgtatttgatta 410  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||       |||||||||||||||||||        |||||||||||    
T  1747222 ttagcggtgtcggcgtgtaagtgctcggtgtccttgcttcattgattgaaactagtttttttctttgaaaatgccaactta--------gtatttgatta 1747131  T
Q  411 ttactctatgcaccataatttcctagtaatcttgtatgttaagatttttatataatgtgcaatataatgcaattagttatgtgttatacaaagttataaa 510  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  1747130 ttactctatgcaccataatttcctagtaatcttgtatggtaagatttttatataaggtgcaatataatgcaattagttatgtgttatacaaagttataaa 1747031  T
Q  511 ttacattgtttttctttgctttcccttgaattgtatcatctggatttgat 560  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1747030 ttacattgtttttctttgctttcccttgaattgtatcatctggatttgat 1746981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 249 - 334
Target Start/End: Original strand, 35723373 - 35723457
Alignment:
Q  249 cgacaccaacacgacactgacacataaaatgttaaactgaattatgtg-attttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    ||||||| | |||||||||||||||| |||  || | ||||||||||| |||||||||| ||||||||||||||||||||| |||||    
T  35723373 cgacaccgatacgacactgacacatataat--tacattgaattatgtgtattttctcaaattattagcggtgtcggcgtgtcagtgt 35723457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 284 - 328
Target Start/End: Complemental strand, 40613487 - 40613443
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgt 328  Q
    |||||||||||||||||||||||  ||||||||||||||||||||    
T  40613487 actgaattatgtgattttctcaaaatattagcggtgtcggcgtgt 40613443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 373 - 560
Target Start/End: Complemental strand, 6006005 - 6005819
Alignment:
Q  373 ctttgaaaatgccaacttagattttctgtatttgattattactctatgcaccataatttcctagtaatcttgtatgttaagatttttatataatgtgcaa 472  Q
    ||||||||||| ||||||||||||  ||||| || || | || || |||| ||||||| || | ||||  |||||| ||| || |||||||||||  |||    
T  6006005 ctttgaaaatgtcaacttagatttgttgtatatgtttgtcaccctgtgcatcataattgccaattaattgtgtatggtaacatatttatataatgcacaa 6005906  T
Q  473 tataatgcaattagttatgtgttatacaaagttataaattacattgtttttctttgctttcccttgaattgtatcatctggatttgat 560  Q
    | ||||  ||  ||||  ||||||||||  ||| ||||||| || ||||| |||  |||||||||||||| ||||||||||| |||||    
T  6005905 tgtaatataacaagttgggtgttatacatcgttttaaattatatagtttt-cttcactttcccttgaattatatcatctggacttgat 6005819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 284 - 323
Target Start/End: Original strand, 8423740 - 8423779
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcgg 323  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  8423740 actgaattatgtgattttctcaaattattagcggtgtcgg 8423779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 342
Target Start/End: Original strand, 20743300 - 20743358
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgttcggtgtc 342  Q
    |||||||||||| |||||||||| |||||| | |||||||||||| |||||||| ||||    
T  20743300 actgaattatgtcattttctcaaattattatccgtgtcggcgtgtcagtgttcgatgtc 20743358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 334
Target Start/End: Complemental strand, 36635361 - 36635311
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    ||||||||||||||||||||||| ||||||| ||||| ||||||| |||||    
T  36635361 actgaattatgtgattttctcaaattattagtggtgttggcgtgtcagtgt 36635311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 243 - 303
Target Start/End: Original strand, 44132627 - 44132685
Alignment:
Q  243 tgtgttcgacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttct 303  Q
    ||||||||||||||||||||||| |||||||| ||  ||| ||||||||| ||||||||||    
T  44132627 tgtgttcgacaccaacacgacaccgacacatataa--ttatactgaattacgtgattttct 44132685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 284 - 328
Target Start/End: Complemental strand, 7012103 - 7012059
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgt 328  Q
    |||||||||||| |||||||||| |||||| ||||||||||||||    
T  7012103 actgaattatgtcattttctcaaattattatcggtgtcggcgtgt 7012059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 328
Target Start/End: Original strand, 22234880 - 22234957
Alignment:
Q  250 gacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttct-caatttattagcggtgtcggcgtgt 328  Q
    |||||| ||||||||| |||||||| |||  || |||||||||||||||||| | ||| || ||||||||||||||||||    
T  22234880 gacaccgacacgacaccgacacatagaat--tacactgaattatgtgatttttttcaaatttttagcggtgtcggcgtgt 22234957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 284 - 328
Target Start/End: Original strand, 23293008 - 23293052
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgt 328  Q
    |||||||||||||||||| |||| |||||||| ||||||||||||    
T  23293008 actgaattatgtgattttttcaaattattagctgtgtcggcgtgt 23293052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 251 - 322
Target Start/End: Original strand, 38148716 - 38148785
Alignment:
Q  251 acaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcg 322  Q
    ||||||||||||||  ||||  ||||||  || |||||||||||||||||||||||  ||||||||||||||    
T  38148716 acaccaacacgacatcgacatttaaaat--tacactgaattatgtgattttctcaaactattagcggtgtcg 38148785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 284 - 334
Target Start/End: Complemental strand, 903959 - 903909
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    ||||||||||||||||||||||| |||||| ||||| ||| |||| |||||    
T  903959 actgaattatgtgattttctcaaattattaacggtgccggtgtgtcagtgt 903909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 284 - 322
Target Start/End: Original strand, 22440622 - 22440660
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcg 322  Q
    ||||||||||||||||||||||| |||||| ||||||||    
T  22440622 actgaattatgtgattttctcaaattattaacggtgtcg 22440660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 323
Target Start/End: Original strand, 23861455 - 23861492
Alignment:
Q  286 tgaattatgtgattttctcaatttattagcggtgtcgg 323  Q
    ||||| |||||||||| |||||||||||||||||||||    
T  23861455 tgaatcatgtgattttatcaatttattagcggtgtcgg 23861492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 320
Target Start/End: Original strand, 30522932 - 30522973
Alignment:
Q  279 gttaaactgaattatgtgattttctcaatttattagcggtgt 320  Q
    |||| ||||||||||||||||||||||| | |||||||||||    
T  30522932 gttacactgaattatgtgattttctcaaataattagcggtgt 30522973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 284 - 320
Target Start/End: Complemental strand, 16189746 - 16189710
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgt 320  Q
    ||||||||||||||||||||||| || ||||||||||    
T  16189746 actgaattatgtgattttctcaaatttttagcggtgt 16189710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 298 - 334
Target Start/End: Original strand, 17345451 - 17345487
Alignment:
Q  298 ttttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    ||||||||| ||||||||||||||||||||| |||||    
T  17345451 ttttctcaaattattagcggtgtcggcgtgtcagtgt 17345487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 286 - 334
Target Start/End: Original strand, 20521873 - 20521921
Alignment:
Q  286 tgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    |||||||||||||||| |||| |||||| |||| ||||||||| |||||    
T  20521873 tgaattatgtgattttatcaaattattatcggtatcggcgtgtcagtgt 20521921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 284 - 328
Target Start/End: Complemental strand, 24343544 - 24343500
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgt 328  Q
    |||||||||||| |||||||||| |||||| | ||||||||||||    
T  24343544 actgaattatgtaattttctcaaattattatccgtgtcggcgtgt 24343500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 286 - 318
Target Start/End: Original strand, 34200295 - 34200327
Alignment:
Q  286 tgaattatgtgattttctcaatttattagcggt 318  Q
    ||||||||||||||||||||| |||||||||||    
T  34200295 tgaattatgtgattttctcaaattattagcggt 34200327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 4e-21; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 251 - 334
Target Start/End: Complemental strand, 32308188 - 32308107
Alignment:
Q  251 acaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    ||||| |||||||||||||||||| |||  || ||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  32308188 acaccgacacgacactgacacatacaat--tacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagtgt 32308107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 250 - 328
Target Start/End: Complemental strand, 19206119 - 19206043
Alignment:
Q  250 gacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgt 328  Q
    |||||||||| ||||| |||||||| |||  |||  ||||||||||||||||||||| |||||||||||||||||||||    
T  19206119 gacaccaacaagacaccgacacatataattataa--tgaattatgtgattttctcaaattattagcggtgtcggcgtgt 19206043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 243 - 334
Target Start/End: Original strand, 6630895 - 6630984
Alignment:
Q  243 tgtgttcgacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    ||||| ||||||||||||||||  |||||||| |||  || ||||||||| |||| |||||||| ||||||| ||||||||||||| |||||    
T  6630895 tgtgtccgacaccaacacgacatcgacacatataat--tacactgaattaagtgactttctcaaattattagtggtgtcggcgtgtcagtgt 6630984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 284 - 328
Target Start/End: Original strand, 29787391 - 29787435
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgt 328  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  29787391 actgaattatgtgattttctcaaattattagcggtgtcggcgtgt 29787435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 250 - 327
Target Start/End: Complemental strand, 30731104 - 30731031
Alignment:
Q  250 gacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtg 327  Q
    |||||||||||||||| |||||| ||    ||| ||||||||||||||||||||||| ||||| ||||||||||||||    
T  30731104 gacaccaacacgacaccgacacacaa----ttacactgaattatgtgattttctcaaattattcgcggtgtcggcgtg 30731031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 285 - 334
Target Start/End: Original strand, 11722121 - 11722170
Alignment:
Q  285 ctgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    |||||||||||||||||||||| || |||||||||||||||||| |||||    
T  11722121 ctgaattatgtgattttctcaaattgttagcggtgtcggcgtgtcagtgt 11722170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 257 - 324
Target Start/End: Complemental strand, 5548738 - 5548673
Alignment:
Q  257 acacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggc 324  Q
    |||||||||||||||||| |||  || |||||||||| |||||||||||| |||| ||||||||||||    
T  5548738 acacgacactgacacatataat--tacactgaattatttgattttctcaaattatcagcggtgtcggc 5548673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 260 - 334
Target Start/End: Complemental strand, 20549850 - 20549778
Alignment:
Q  260 cgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    |||||| |||||||| |||  || ||||||||| ||||||||||||| |||||||||||||||| |||| |||||    
T  20549850 cgacaccgacacatataat--tacactgaattacgtgattttctcaaattattagcggtgtcggtgtgtcagtgt 20549778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 264 - 334
Target Start/End: Complemental strand, 22868097 - 22868029
Alignment:
Q  264 actgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    ||||||||||| |||  || ||||||||||||||||||||||  ||||||| ||||||||||||| |||||    
T  22868097 actgacacatataat--tacactgaattatgtgattttctcatattattagtggtgtcggcgtgtcagtgt 22868029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 326
Target Start/End: Complemental strand, 23191933 - 23191891
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgt 326  Q
    |||||| |||||||||||||||| |||||||||||||||||||    
T  23191933 actgaaatatgtgattttctcaaattattagcggtgtcggcgt 23191891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 334
Target Start/End: Complemental strand, 26733341 - 26733291
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    |||||||||||||||||| |||| ||||||||||||||| ||||| |||||    
T  26733341 actgaattatgtgattttgtcaaattattagcggtgtcgacgtgtcagtgt 26733291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 334
Target Start/End: Complemental strand, 27945078 - 27945028
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    |||||||||||| |||||||||| ||||||| ||||||||||||| |||||    
T  27945078 actgaattatgtaattttctcaaattattagtggtgtcggcgtgtcagtgt 27945028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 257 - 333
Target Start/End: Original strand, 22602707 - 22602781
Alignment:
Q  257 acacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtg 333  Q
    ||||||||| |||||||| |||  || ||||||||||||||||||||||| | |||  |||||||||||||| ||||    
T  22602707 acacgacaccgacacatataat--tacactgaattatgtgattttctcaaataatttacggtgtcggcgtgtcagtg 22602781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 244 - 328
Target Start/End: Complemental strand, 24339717 - 24339635
Alignment:
Q  244 gtgttcgacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgt 328  Q
    |||| ||||||| ||||||||| ||||| |  |||  || |||||||||||||||||| |||| |||||||| ||||||||||||    
T  24339717 gtgtccgacaccgacacgacaccgacacttgtaat--tacactgaattatgtgattttttcaaattattagctgtgtcggcgtgt 24339635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 287 - 328
Target Start/End: Complemental strand, 28155604 - 28155563
Alignment:
Q  287 gaattatgtgattttctcaatttattagcggtgtcggcgtgt 328  Q
    ||||||||| |||||||||| |||||||||||||||||||||    
T  28155604 gaattatgtaattttctcaaattattagcggtgtcggcgtgt 28155563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 284 - 328
Target Start/End: Complemental strand, 24289857 - 24289813
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgt 328  Q
    |||||||||||| |||||||||| ||||| |||||||||||||||    
T  24289857 actgaattatgtaattttctcaaattattggcggtgtcggcgtgt 24289813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 284 - 328
Target Start/End: Complemental strand, 25481939 - 25481895
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgt 328  Q
    |||||||||||||||||| |||| |||||||| ||||||||||||    
T  25481939 actgaattatgtgattttttcaaattattagctgtgtcggcgtgt 25481895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 288 - 334
Target Start/End: Complemental strand, 10042970 - 10042924
Alignment:
Q  288 aattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    |||||||||| ||| |||| ||||||| |||||||||||||||||||    
T  10042970 aattatgtgaatttatcaaattattagtggtgtcggcgtgtaagtgt 10042924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 257 - 334
Target Start/End: Original strand, 21828402 - 21828477
Alignment:
Q  257 acacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    |||| ||||||||||||| |||  || | || |||||||||||||||||| ||| || |||||||||||||| |||||    
T  21828402 acacaacactgacacatacaat--tacaatggattatgtgattttctcaaattactaacggtgtcggcgtgtcagtgt 21828477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 284 - 334
Target Start/End: Complemental strand, 22484062 - 22484012
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    |||||||||||  ||||||| || ||||||||||||||||||||| |||||    
T  22484062 actgaattatgcaattttctaaaattattagcggtgtcggcgtgtcagtgt 22484012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 284 - 322
Target Start/End: Original strand, 32287485 - 32287523
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcg 322  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  32287485 actgaattatgtgattttctcagattattagcggtgtcg 32287523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 334
Target Start/End: Complemental strand, 25791685 - 25791640
Alignment:
Q  289 attatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    ||||||||| |||||||| | ||||||||||||||||||| |||||    
T  25791685 attatgtgaatttctcaaataattagcggtgtcggcgtgtcagtgt 25791640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 334
Target Start/End: Original strand, 26329372 - 26329454
Alignment:
Q  250 gacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    |||||| ||||||| | |||||||| |||  || |||||||| |||| ||||||||| |||||| || ||||||||||| |||||    
T  26329372 gacaccgacacgacgccgacacatataat--tacactgaattgtgtgtttttctcaaattattaacgatgtcggcgtgtcagtgt 26329454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 313
Target Start/End: Original strand, 35297657 - 35297723
Alignment:
Q  245 tgttcgacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttatta 313  Q
    ||||||||| |||||||||||  ||||||| |||  |||  ||||||||||||||||||||| ||||||    
T  35297657 tgttcgacatcaacacgacaccaacacatataattataa--tgaattatgtgattttctcaaattatta 35297723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 335
Target Start/End: Complemental strand, 35861999 - 35861950
Alignment:
Q  286 tgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgtt 335  Q
    |||||||||||||||| |||| |||||||  |||||||||||| ||||||    
T  35861999 tgaattatgtgattttttcaaattattagttgtgtcggcgtgttagtgtt 35861950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 292 - 328
Target Start/End: Complemental strand, 1433483 - 1433447
Alignment:
Q  292 atgtgattttctcaatttattagcggtgtcggcgtgt 328  Q
    ||||||||||||||| |||||| ||||||||||||||    
T  1433483 atgtgattttctcaaattattaacggtgtcggcgtgt 1433447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 284 - 316
Target Start/End: Complemental strand, 2424651 - 2424619
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcg 316  Q
    ||||||||||||||||||||||| |||||||||    
T  2424651 actgaattatgtgattttctcaaattattagcg 2424619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 288 - 328
Target Start/End: Original strand, 2425759 - 2425799
Alignment:
Q  288 aattatgtgattttctcaatttattagcggtgtcggcgtgt 328  Q
    ||||||||||||||||||| |||||| ||||| ||||||||    
T  2425759 aattatgtgattttctcaaattattaacggtgccggcgtgt 2425799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 288 - 328
Target Start/End: Complemental strand, 5307293 - 5307253
Alignment:
Q  288 aattatgtgattttctcaatttattagcggtgtcggcgtgt 328  Q
    ||||||||||||||||||| |||| || |||||||||||||    
T  5307293 aattatgtgattttctcaaattataagtggtgtcggcgtgt 5307253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 245 - 328
Target Start/End: Original strand, 23128646 - 23128727
Alignment:
Q  245 tgttcgacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgt 328  Q
    |||||||||||||||| |||| ||||||||  |  ||| |||||||||| || ||||||||| ||||||  |||||| ||||||    
T  23128646 tgttcgacaccaacacaacaccgacacatatga--ttacactgaattatatggttttctcaaattattattggtgtcagcgtgt 23128727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 35)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 244 - 336
Target Start/End: Original strand, 10339109 - 10339200
Alignment:
Q  244 gtgttcgacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgttc 336  Q
    |||| ||||||| ||||| |||||||||||| ||| | | ||||||||||||||||||||||| ||| | ||||||||||||||| |||||||    
T  10339109 gtgtccgacaccgacacggcactgacacatataat-taacactgaattatgtgattttctcaaattaatcgcggtgtcggcgtgtcagtgttc 10339200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 260 - 337
Target Start/End: Complemental strand, 19040411 - 19040336
Alignment:
Q  260 cgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgttcg 337  Q
    |||||| |||||||| |||  || ||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||    
T  19040411 cgacacagacacatataat--tacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagtattcg 19040336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 244 - 337
Target Start/End: Complemental strand, 26562764 - 26562673
Alignment:
Q  244 gtgttcgacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgttcg 337  Q
    |||||||||||| ||||||||  |||||||| |||  || ||||||||||||||||||||||| || ||||| ||||||||||||  |||||||    
T  26562764 gtgttcgacaccgacacgacatcgacacatataat--tacactgaattatgtgattttctcaaatttttagcagtgtcggcgtgtccgtgttcg 26562673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 260 - 334
Target Start/End: Original strand, 7265593 - 7265665
Alignment:
Q  260 cgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    |||||| |||||||| |||  || ||||||||||||||||||||||| ||||||||||||| ||||||| |||||    
T  7265593 cgacaccgacacatataat--tacactgaattatgtgattttctcaaattattagcggtgttggcgtgtcagtgt 7265665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 257 - 334
Target Start/End: Complemental strand, 9027240 - 9027165
Alignment:
Q  257 acacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    ||||||||| |||||||| |||  || || ||||||||||||| |||||| ||||||||||||||||||||| |||||    
T  9027240 acacgacaccgacacatataat--tacacggaattatgtgattatctcaaattattagcggtgtcggcgtgtcagtgt 9027165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 284 - 334
Target Start/End: Complemental strand, 9658916 - 9658866
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    |||||||||||||||||||| || ||||||||||||||||||||| |||||    
T  9658916 actgaattatgtgattttcttaaattattagcggtgtcggcgtgtcagtgt 9658866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 243 - 334
Target Start/End: Complemental strand, 16766773 - 16766684
Alignment:
Q  243 tgtgttcgacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    ||||| ||||||| ||||||||| ||||| |  |||  || |||||||||||||||||| |||| |||||||| |||||||||||| |||||    
T  16766773 tgtgtccgacaccgacacgacaccgacacttgtaat--tacactgaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgt 16766684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 250 - 328
Target Start/End: Original strand, 5000616 - 5000692
Alignment:
Q  250 gacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgt 328  Q
    |||||| ||| |||||||||| |||||||  || ||||||| ||||||||||||| | ||||||||||||||| |||||    
T  5000616 gacaccgacatgacactgacatataaaat--tatactgaatcatgtgattttctcgaattattagcggtgtcgacgtgt 5000692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 285 - 339
Target Start/End: Original strand, 7801179 - 7801233
Alignment:
Q  285 ctgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgttcggt 339  Q
    ||||||||||||||||| |||| |||||||  |||||||||||| ||||||||||    
T  7801179 ctgaattatgtgattttttcaaattattagttgtgtcggcgtgttagtgttcggt 7801233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 328
Target Start/End: Complemental strand, 9629418 - 9629376
Alignment:
Q  286 tgaattatgtgattttctcaatttattagcggtgtcggcgtgt 328  Q
    ||||||||||||||||||||| ||||| |||||||||||||||    
T  9629418 tgaattatgtgattttctcaaattattggcggtgtcggcgtgt 9629376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 290 - 328
Target Start/End: Original strand, 20371138 - 20371176
Alignment:
Q  290 ttatgtgattttctcaatttattagcggtgtcggcgtgt 328  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  20371138 ttatgtgattttctcaaattattagcggtgtcggcgtgt 20371176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 257 - 321
Target Start/End: Original strand, 9025491 - 9025553
Alignment:
Q  257 acacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtc 321  Q
    ||||||||| |||||||| |||  || ||||||||||||||||||||||| |||||||| |||||    
T  9025491 acacgacaccgacacatataat--tacactgaattatgtgattttctcaaattattagcagtgtc 9025553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 284 - 333
Target Start/End: Original strand, 17341686 - 17341735
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtg 333  Q
    |||||||||||||||||| |||| |||||| |||||||||||||| ||||    
T  17341686 actgaattatgtgattttatcaaattattaacggtgtcggcgtgtcagtg 17341735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 243 - 334
Target Start/End: Original strand, 9107353 - 9107442
Alignment:
Q  243 tgtgttcgacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    ||||| ||||||| ||||||||| ||||| |  |||  || |||||||| ||||||||| |||| |||||||| |||||||||||| |||||    
T  9107353 tgtgtccgacaccgacacgacaccgacacttgtaat--tacactgaattttgtgattttttcaaattattagctgtgtcggcgtgttagtgt 9107442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 288 - 328
Target Start/End: Complemental strand, 10842565 - 10842525
Alignment:
Q  288 aattatgtgattttctcaatttattagcggtgtcggcgtgt 328  Q
    |||||||||||||| |||| |||||||||||||||||||||    
T  10842565 aattatgtgattttttcaaattattagcggtgtcggcgtgt 10842525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 334
Target Start/End: Original strand, 5732539 - 5732582
Alignment:
Q  291 tatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    |||||||||||||||| |||||| |||||||||||||| |||||    
T  5732539 tatgtgattttctcaaattattaacggtgtcggcgtgtcagtgt 5732582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 328
Target Start/End: Original strand, 8931592 - 8931668
Alignment:
Q  250 gacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgt 328  Q
    |||||| ||||||||  |||||||| |||  || |||||||||||| |||||||||| || ||||| ||||||||||||    
T  8931592 gacaccgacacgacatcgacacatataat--tatactgaattatgttattttctcaaatttttagctgtgtcggcgtgt 8931668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 286 - 328
Target Start/End: Complemental strand, 7378014 - 7377972
Alignment:
Q  286 tgaattatgtgattttctcaatttattagcggtgtcggcgtgt 328  Q
    ||||||||||||||||||||| || ||||||||||||| ||||    
T  7378014 tgaattatgtgattttctcaaatttttagcggtgtcggggtgt 7377972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 284 - 334
Target Start/End: Original strand, 7996400 - 7996450
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    |||||||||| |||||||||||| |||||||| |||||||| ||| |||||    
T  7996400 actgaattatatgattttctcaaattattagcagtgtcggcatgtcagtgt 7996450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 284 - 334
Target Start/End: Complemental strand, 8022401 - 8022351
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    |||||||||| |||||||||||| |||||||| |||||||| ||| |||||    
T  8022401 actgaattatatgattttctcaaattattagcagtgtcggcatgtcagtgt 8022351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 284 - 334
Target Start/End: Complemental strand, 12696361 - 12696311
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    |||||||||||| ||||| |||| |||||||| |||||||||||| |||||    
T  12696361 actgaattatgtaattttttcaaattattagctgtgtcggcgtgtcagtgt 12696311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 284 - 334
Target Start/End: Complemental strand, 13851773 - 13851723
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    ||||||||| || |||||||||| ||||||||||||||| ||||| |||||    
T  13851773 actgaattacgttattttctcaaattattagcggtgtcgacgtgtcagtgt 13851723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 288 - 334
Target Start/End: Original strand, 17841615 - 17841661
Alignment:
Q  288 aattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    |||||||||||||| |||| |||||||| |||||||||||| |||||    
T  17841615 aattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgt 17841661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 284 - 334
Target Start/End: Complemental strand, 19044501 - 19044451
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    ||||||||||||||| ||||||| |||||||  |||||||||||| |||||    
T  19044501 actgaattatgtgatattctcaaattattagtcgtgtcggcgtgtcagtgt 19044451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 286 - 320
Target Start/End: Original strand, 30866168 - 30866202
Alignment:
Q  286 tgaattatgtgattttctcaatttattagcggtgt 320  Q
    ||||||||||||||||||||| |||||||||||||    
T  30866168 tgaattatgtgattttctcaaattattagcggtgt 30866202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 326
Target Start/End: Complemental strand, 6665249 - 6665208
Alignment:
Q  285 ctgaattatgtgattttctcaatttattagcggtgtcggcgt 326  Q
    |||||||||||||||| ||||| ||||||||||| |||||||    
T  6665249 ctgaattatgtgatttactcaaattattagcggtttcggcgt 6665208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 324
Target Start/End: Complemental strand, 10294182 - 10294104
Alignment:
Q  244 gtgttcgacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggc 324  Q
    |||| ||||||||||||||||| |||||||| ||  ||| | |||| |||| |||| |||||| ||||||||||| |||||    
T  10294182 gtgtccgacaccaacacgacaccgacacatataa--ttacattgaaatatgcgattatctcaaattattagcggtatcggc 10294104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 337
Target Start/End: Original strand, 13360394 - 13360447
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgttcg 337  Q
    ||||||||||||||||||||||| ||| ||| ||||||| |||||  |||||||    
T  13360394 actgaattatgtgattttctcaaattactagtggtgtcgacgtgtctgtgttcg 13360447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 337
Target Start/End: Complemental strand, 31959196 - 31959143
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgttcg 337  Q
    |||| ||||||||||||| |||| |||||||| ||| |||||||| ||||||||    
T  31959196 actgcattatgtgattttttcaaattattagctgtgacggcgtgtcagtgttcg 31959143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 321
Target Start/End: Original strand, 32511688 - 32511725
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtc 321  Q
    |||||||||||||||||||| || ||||||||||||||    
T  32511688 actgaattatgtgattttcttaaattattagcggtgtc 32511725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 334
Target Start/End: Original strand, 34073337 - 34073419
Alignment:
Q  250 gacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    |||||| ||||||||| ||| |||| |||  || ||||||||||| ||||||||||| ||||||||| ||| ||| ||| |||||    
T  34073337 gacaccgacacgacaccgacccatataat--tacactgaattatgagattttctcaaattattagcgatgttggcatgtcagtgt 34073419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 284 - 328
Target Start/End: Original strand, 7977852 - 7977896
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgt 328  Q
    |||||||||||| ||||| |||| |||||||| ||||||||||||    
T  7977852 actgaattatgtaattttttcaaattattagctgtgtcggcgtgt 7977896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 284 - 320
Target Start/End: Original strand, 31579247 - 31579283
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgt 320  Q
    ||||||||||||||||||||||| |||||| ||||||    
T  31579247 actgaattatgtgattttctcaaattattaacggtgt 31579283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 288 - 328
Target Start/End: Original strand, 33001315 - 33001355
Alignment:
Q  288 aattatgtgattttctcaatttattagcggtgtcggcgtgt 328  Q
    |||||||||||||| |||| |||||||| ||||||||||||    
T  33001315 aattatgtgattttttcaaattattagcagtgtcggcgtgt 33001355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 284 - 328
Target Start/End: Complemental strand, 34595171 - 34595127
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgt 328  Q
    |||||||||||||||||| |||| |||||||  ||||||||||||    
T  34595171 actgaattatgtgattttttcaaattattagttgtgtcggcgtgt 34595127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 9e-16; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 250 - 328
Target Start/End: Original strand, 24362192 - 24362268
Alignment:
Q  250 gacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgt 328  Q
    |||||| |||||||| ||||||||| |||  || |||||||||||||||| |||||| |||||||||||||||||||||    
T  24362192 gacaccgacacgacattgacacatataat--tacactgaattatgtgattctctcaaattattagcggtgtcggcgtgt 24362268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 250 - 326
Target Start/End: Original strand, 11927076 - 11927150
Alignment:
Q  250 gacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgt 326  Q
    |||||||||||||||| |||||||| |||  || |||||||||||||||||| |||| |||||| | ||||||||||    
T  11927076 gacaccaacacgacaccgacacatataat--tacactgaattatgtgattttatcaaattattaacagtgtcggcgt 11927150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 284 - 328
Target Start/End: Complemental strand, 34897122 - 34897078
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgt 328  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||    
T  34897122 actgaattatgtgattttctcaaattattagcggtgtcgacgtgt 34897078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 288 - 328
Target Start/End: Original strand, 39954305 - 39954345
Alignment:
Q  288 aattatgtgattttctcaatttattagcggtgtcggcgtgt 328  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  39954305 aattatgtgattttctcaaattattagcggtgtcggcgtgt 39954345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 244 - 334
Target Start/End: Original strand, 15816113 - 15816201
Alignment:
Q  244 gtgttcgacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    |||| ||||||||||||||||| ||||| || |||  || ||| |||||||||||||| |||| |||||||  |||||||||||| |||||    
T  15816113 gtgtccgacaccaacacgacaccgacacttataat--tacactaaattatgtgattttttcaaattattagttgtgtcggcgtgtcagtgt 15816201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 260 - 334
Target Start/End: Original strand, 31109518 - 31109590
Alignment:
Q  260 cgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    ||||||||||||||| |  |||| |||||||| | |||||||||||| |||||| |||||||||||||| |||||    
T  31109518 cgacactgacacatata--gttagactgaattgtttgattttctcaaattattaacggtgtcggcgtgtcagtgt 31109590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 328
Target Start/End: Original strand, 31236601 - 31236643
Alignment:
Q  286 tgaattatgtgattttctcaatttattagcggtgtcggcgtgt 328  Q
    ||||||||||||||||||||| |||||||| ||||||||||||    
T  31236601 tgaattatgtgattttctcaaattattagcagtgtcggcgtgt 31236643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 260 - 328
Target Start/End: Original strand, 13844596 - 13844662
Alignment:
Q  260 cgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgt 328  Q
    |||||| |||||||| |||  || ||| ||||||||||||||||||| |||||||| ||||||||||||    
T  13844596 cgacaccgacacatataat--tacactcaattatgtgattttctcaaattattagcagtgtcggcgtgt 13844662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 284 - 321
Target Start/End: Original strand, 18067956 - 18067993
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtc 321  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  18067956 actgaattatgtgattttctcaaattattagcggtgtc 18067993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 286 - 334
Target Start/End: Original strand, 13436988 - 13437036
Alignment:
Q  286 tgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    |||||||||||||||| |||| |||||||| |||||||||||| |||||    
T  13436988 tgaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgt 13437036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 286 - 334
Target Start/End: Complemental strand, 22652011 - 22651963
Alignment:
Q  286 tgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    |||||||||||||||| |||| |||||||| |||||||||||| |||||    
T  22652011 tgaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgt 22651963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 288 - 328
Target Start/End: Complemental strand, 27101548 - 27101508
Alignment:
Q  288 aattatgtgattttctcaatttattagcggtgtcggcgtgt 328  Q
    |||||||||||||| |||| |||||||||||||||||||||    
T  27101548 aattatgtgattttttcaaattattagcggtgtcggcgtgt 27101508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 284 - 352
Target Start/End: Original strand, 30271313 - 30271381
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgttcggtgtccttgcttcat 352  Q
    |||| ||||||||||||| |||| | |||||| |||||||||||| ||||| |||||||  ||||||||    
T  30271313 actgcattatgtgattttttcaaatgattagctgtgtcggcgtgtcagtgtccggtgtctgtgcttcat 30271381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 323
Target Start/End: Complemental strand, 4611571 - 4611532
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcgg 323  Q
    |||||||||||| |||||||||| ||||||||||||||||    
T  4611571 actgaattatgttattttctcaaattattagcggtgtcgg 4611532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 260 - 334
Target Start/End: Original strand, 4786338 - 4786410
Alignment:
Q  260 cgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    |||||| |||||||| |||  || |||||||||||||||||||| || ||||||  ||||||||||||| |||||    
T  4786338 cgacaccgacacatataat--tacactgaattatgtgattttcttaaattattaatggtgtcggcgtgtcagtgt 4786410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 328
Target Start/End: Complemental strand, 11944734 - 11944658
Alignment:
Q  250 gacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgt 328  Q
    |||| ||||||||||| |||||||| |||  || ||||| |||||||||||| |||| |||||| | ||||||||||||    
T  11944734 gacatcaacacgacaccgacacatataat--tacactgagttatgtgattttatcaaattattaacagtgtcggcgtgt 11944658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 284 - 326
Target Start/End: Complemental strand, 7658500 - 7658458
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgt 326  Q
    |||||||||||| |||||||||| ||||||| |||||||||||    
T  7658500 actgaattatgtaattttctcaaattattagtggtgtcggcgt 7658458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 286 - 328
Target Start/End: Complemental strand, 27213582 - 27213540
Alignment:
Q  286 tgaattatgtgattttctcaatttattagcggtgtcggcgtgt 328  Q
    |||||||||||||||||| || |||||||| ||||||||||||    
T  27213582 tgaattatgtgattttctgaaattattagcagtgtcggcgtgt 27213540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 284 - 334
Target Start/End: Original strand, 29510326 - 29510376
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    |||||||| ||||||||| |||| |||||||| |||||||||||| |||||    
T  29510326 actgaattttgtgattttttcaaattattagctgtgtcggcgtgtcagtgt 29510376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 260 - 315
Target Start/End: Complemental strand, 3025610 - 3025557
Alignment:
Q  260 cgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagc 315  Q
    |||||||||||| || |||  || ||||||||||||||||||||||| ||||||||    
T  3025610 cgacactgacacctataat--tacactgaattatgtgattttctcaaattattagc 3025557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 321
Target Start/End: Complemental strand, 25566910 - 25566841
Alignment:
Q  250 gacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtc 321  Q
    |||||||||||||||| ||||| |  |||  || |||||||||||||||||| |||| |||||||| |||||    
T  25566910 gacaccaacacgacaccgacacttgtaat--tacactgaattatgtgattttttcaaattattagctgtgtc 25566841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 286 - 334
Target Start/End: Complemental strand, 36934705 - 36934657
Alignment:
Q  286 tgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    |||||||||||||||| || | ||||||||||||||| ||||| |||||    
T  36934705 tgaattatgtgattttttcgaattattagcggtgtcgacgtgttagtgt 36934657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 9e-16; HSPs: 45)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 244 - 326
Target Start/End: Complemental strand, 25361961 - 25361881
Alignment:
Q  244 gtgttcgacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgt 326  Q
    |||| ||||||| |||||||||||||||||| |||  || ||||||||||||||||||||||| |||| || |||||||||||    
T  25361961 gtgtccgacaccgacacgacactgacacatataat--tacactgaattatgtgattttctcaaattatcagtggtgtcggcgt 25361881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 284 - 334
Target Start/End: Original strand, 2896143 - 2896193
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  2896143 actgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagtgt 2896193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 284 - 334
Target Start/End: Complemental strand, 36878498 - 36878448
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  36878498 actgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagtgt 36878448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 249 - 321
Target Start/End: Complemental strand, 34371783 - 34371714
Alignment:
Q  249 cgacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtc 321  Q
    ||||||||||||||||| |||||||| |||  || ||||||||||||||||||||||| ||||||||||||||    
T  34371783 cgacaccaacacgacaccgacacatataat--tacactgaattatgtgattttctcaa-ttattagcggtgtc 34371714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 257 - 328
Target Start/End: Complemental strand, 9828106 - 9828037
Alignment:
Q  257 acacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgt 328  Q
    ||||||||| ||||||||||||  || |||||||||||||||||| |||| ||||||| |||||||||||||    
T  9828106 acacgacaccgacacataaaat--tacactgaattatgtgattttatcaaattattagtggtgtcggcgtgt 9828037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 284 - 328
Target Start/End: Original strand, 10474999 - 10475043
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgt 328  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  10474999 actgaattatgtgattttctcaagttattagcggtgtcggcgtgt 10475043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 250 - 336
Target Start/End: Original strand, 10572579 - 10572663
Alignment:
Q  250 gacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgttc 336  Q
    ||||||||||| |||| |||||||  |||  || || |||||||||||||||||||| ||||||| ||||||||||||| |||||||    
T  10572579 gacaccaacacaacaccgacacatttaat--tacaccgaattatgtgattttctcaaattattagtggtgtcggcgtgtcagtgttc 10572663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 284 - 334
Target Start/End: Original strand, 398787 - 398837
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    |||||||||||||||||| |||| ||||||||||||||||||||| |||||    
T  398787 actgaattatgtgattttttcaaattattagcggtgtcggcgtgtcagtgt 398837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 284 - 334
Target Start/End: Original strand, 17831553 - 17831603
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||| |||||    
T  17831553 actgaataatgtgattttctcaaattattagcggtgtcggcgtgtcagtgt 17831603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 286 - 334
Target Start/End: Complemental strand, 6427385 - 6427337
Alignment:
Q  286 tgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    ||||||||||||||||||||| ||||||||||||| ||||||| |||||    
T  6427385 tgaattatgtgattttctcaaattattagcggtgttggcgtgtcagtgt 6427337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 257 - 328
Target Start/End: Original strand, 7918208 - 7918277
Alignment:
Q  257 acacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgt 328  Q
    |||||||||||||||||| |||  || ||||||||||||||||||||||| ||||||| | |||| ||||||    
T  7918208 acacgacactgacacatataat--tacactgaattatgtgattttctcaaattattagtgatgtcagcgtgt 7918277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 284 - 328
Target Start/End: Original strand, 12443482 - 12443526
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgt 328  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||    
T  12443482 actgaattatgtgattttctcaaattattagctgtgtcggcgtgt 12443526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 286 - 337
Target Start/End: Complemental strand, 1262919 - 1262868
Alignment:
Q  286 tgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgttcg 337  Q
    ||||||||||||||||||||| |||||||| ||||||||||||  |||||||    
T  1262919 tgaattatgtgattttctcaaattattagctgtgtcggcgtgtccgtgttcg 1262868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 334
Target Start/End: Original strand, 5376522 - 5376572
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    |||||||||||| ||||||| || ||||||||||||||||||||| |||||    
T  5376522 actgaattatgttattttcttaaattattagcggtgtcggcgtgttagtgt 5376572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 6415019 - 6415073
Alignment:
Q  280 ttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    |||||||| |||||||||||||||||| | ||||||| ||||||||||| |||||    
T  6415019 ttaaactgtattatgtgattttctcaaataattagcgatgtcggcgtgtcagtgt 6415073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 251 - 328
Target Start/End: Complemental strand, 17754379 - 17754304
Alignment:
Q  251 acaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgt 328  Q
    ||||| |||| ||||||||||||| |  |||| |||||||||||| ||||| |||| |||||||||||||||| ||||    
T  17754379 acaccgacaccacactgacacatata--gttacactgaattatgtaattttttcaaattattagcggtgtcggtgtgt 17754304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 244 - 317
Target Start/End: Complemental strand, 44482305 - 44482234
Alignment:
Q  244 gtgttcgacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcgg 317  Q
    |||| ||||||| ||||||||| |||||||| |||  || ||||||||||||||||||||||| |||| |||||    
T  44482305 gtgtccgacaccgacacgacaccgacacatataat--tacactgaattatgtgattttctcaaattataagcgg 44482234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 286 - 335
Target Start/End: Original strand, 609482 - 609531
Alignment:
Q  286 tgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgtt 335  Q
    |||||||||| |||||||||| ||||||| ||||||||||||| ||||||    
T  609482 tgaattatgtaattttctcaaattattagtggtgtcggcgtgtcagtgtt 609531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 284 - 337
Target Start/End: Original strand, 19562643 - 19562696
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgttcg 337  Q
    |||||| |||| ||||||||||| |||||||| |||||||||||| ||||||||    
T  19562643 actgaactatgagattttctcaaattattagcagtgtcggcgtgtcagtgttcg 19562696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 284 - 328
Target Start/End: Complemental strand, 113336 - 113292
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgt 328  Q
    |||||||||||||||||| |||| |||||||| ||||||||||||    
T  113336 actgaattatgtgattttttcaaattattagctgtgtcggcgtgt 113292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 284 - 320
Target Start/End: Complemental strand, 10233290 - 10233254
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgt 320  Q
    ||||||||||||||||||||||||||||||| |||||    
T  10233290 actgaattatgtgattttctcaatttattagtggtgt 10233254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 284 - 324
Target Start/End: Original strand, 25098577 - 25098617
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggc 324  Q
    ||||||||||||||||||||||| |||| ||||||||||||    
T  25098577 actgaattatgtgattttctcaaattatcagcggtgtcggc 25098617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 284 - 328
Target Start/End: Complemental strand, 34298473 - 34298429
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgt 328  Q
    ||||||||||||||||||||||| ||||||| |||||||| ||||    
T  34298473 actgaattatgtgattttctcaaattattagtggtgtcggtgtgt 34298429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 334
Target Start/End: Complemental strand, 9709854 - 9709807
Alignment:
Q  287 gaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    |||||||||||||||||||| ||||||||||||| ||| ||| |||||    
T  9709854 gaattatgtgattttctcaaattattagcggtgtaggcatgtcagtgt 9709807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 323
Target Start/End: Original strand, 26238134 - 26238173
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcgg 323  Q
    |||||||||||| |||||||||| ||||||||||||||||    
T  26238134 actgaattatgttattttctcaaattattagcggtgtcgg 26238173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 335
Target Start/End: Original strand, 27471588 - 27471639
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgtt 335  Q
    ||||||||||||| ||||||||| ||||||||||| |||| |||| ||||||    
T  27471588 actgaattatgtgcttttctcaaattattagcggtatcggtgtgtcagtgtt 27471639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 337
Target Start/End: Original strand, 38078685 - 38078736
Alignment:
Q  286 tgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgttcg 337  Q
    |||||||||||||||| |||| |||||||| |||||| ||||| ||||||||    
T  38078685 tgaattatgtgattttttcaaattattagctgtgtcgacgtgtcagtgttcg 38078736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 260 - 326
Target Start/End: Original strand, 39953146 - 39953210
Alignment:
Q  260 cgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgt 326  Q
    |||||| |||||||| |||  || ||| |||||||||||||||| || |||||||||||||||||||    
T  39953146 cgacaccgacacatacaat--tacactaaattatgtgattttctaaaattattagcggtgtcggcgt 39953210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 284 - 326
Target Start/End: Original strand, 5898288 - 5898330
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgt 326  Q
    |||||||||||||||||| |||  |||||||||||||||||||    
T  5898288 actgaattatgtgattttttcagattattagcggtgtcggcgt 5898330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 9103681 - 9103627
Alignment:
Q  280 ttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    ||||||| |||||||||||||| |||| |||||| | |||||||||||| |||||    
T  9103681 ttaaactaaattatgtgattttttcaaattattaactgtgtcggcgtgtcagtgt 9103627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 284 - 322
Target Start/End: Original strand, 20157372 - 20157410
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcg 322  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  20157372 actgaattatgtgattttctcacattattagcggtgtcg 20157410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 284 - 334
Target Start/End: Complemental strand, 38503357 - 38503307
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    |||||| ||| |||||||||||| |||||||||||||||| |||| |||||    
T  38503357 actgaaatatatgattttctcaaattattagcggtgtcggtgtgttagtgt 38503307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 284 - 334
Target Start/End: Original strand, 40285676 - 40285726
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    ||||||||||| ||||||||||| ||||||||||||| || |||| |||||    
T  40285676 actgaattatgcgattttctcaaattattagcggtgttggtgtgtcagtgt 40285726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 288 - 326
Target Start/End: Original strand, 41877496 - 41877534
Alignment:
Q  288 aattatgtgattttctcaatttattagcggtgtcggcgt 326  Q
    |||||||| |||||||||| |||||||||||||||||||    
T  41877496 aattatgtaattttctcaaattattagcggtgtcggcgt 41877534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 9690303 - 9690344
Alignment:
Q  293 tgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    ||||||||||||| ||||||||||||||| |||||| |||||    
T  9690303 tgtgattttctcagtttattagcggtgtcagcgtgtcagtgt 9690344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 328
Target Start/End: Original strand, 29163381 - 29163447
Alignment:
Q  260 cgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgt 328  Q
    |||||| |||||||| |||  |||| |||||||||||||||||  || || ||||||||||||||||||    
T  29163381 cgacaccgacacatataat--taaattgaattatgtgattttcctaaatttttagcggtgtcggcgtgt 29163447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 325
Target Start/End: Complemental strand, 31015080 - 31015039
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcg 325  Q
    ||||||||||||||||||||||| |||||||| |||| ||||    
T  31015080 actgaattatgtgattttctcaaattattagctgtgtaggcg 31015039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 334
Target Start/End: Complemental strand, 36906033 - 36905984
Alignment:
Q  285 ctgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    |||||||||||||||||||||  ||||||||||||| || |||| |||||    
T  36906033 ctgaattatgtgattttctcagattattagcggtgttggtgtgtcagtgt 36905984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 321
Target Start/End: Complemental strand, 40181908 - 40181871
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtc 321  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  40181908 actgaattatgtgattttctcaaattattagcagtgtc 40181871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 284 - 328
Target Start/End: Original strand, 1486731 - 1486775
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgt 328  Q
    |||||||||||||||||| |||| |||||||| ||||| ||||||    
T  1486731 actgaattatgtgattttttcaaattattagctgtgtcagcgtgt 1486775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 284 - 328
Target Start/End: Complemental strand, 13436495 - 13436451
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgt 328  Q
    ||||||||||||||||| || || |||||||| ||||||||||||    
T  13436495 actgaattatgtgatttccttaaattattagcagtgtcggcgtgt 13436451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 284 - 320
Target Start/End: Complemental strand, 19909334 - 19909298
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgt 320  Q
    ||||| ||||||||||||||||| |||||||||||||    
T  19909334 actgagttatgtgattttctcaaattattagcggtgt 19909298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 284 - 328
Target Start/End: Complemental strand, 21378615 - 21378571
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgt 328  Q
    |||||||||||| ||||| ||||||||||||| ||||||| ||||    
T  21378615 actgaattatgtaattttttcaatttattagctgtgtcggtgtgt 21378571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 288 - 328
Target Start/End: Complemental strand, 21530722 - 21530682
Alignment:
Q  288 aattatgtgattttctcaatttattagcggtgtcggcgtgt 328  Q
    |||||| |||||||||||| |||||| ||||||||||||||    
T  21530722 aattatatgattttctcaaattattaacggtgtcggcgtgt 21530682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 257 - 328
Target Start/End: Original strand, 34712380 - 34712449
Alignment:
Q  257 acacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgt 328  Q
    |||||||||||||||||| ||  ||| ||| |||||||| |||||||||| |||||||| ||| ||| ||||    
T  34712380 acacgacactgacacatataa--ttacactaaattatgttattttctcaaattattagcagtgacggtgtgt 34712449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 243 - 343
Target Start/End: Complemental strand, 3966579 - 3966481
Alignment:
Q  243 tgtgttcgacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgttcggtgtc 342  Q
    ||||| ||||||  ||||||||| |||||||| |||  || |||||||| |||||||||||||| ||||||||||||||||| ||| ||||| | |||||    
T  3966579 tgtgtccgacactgacacgacaccgacacatataat--tacactgaattgtgtgattttctcaaattattagcggtgtcggcatgtcagtgtccagtgtc 3966482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 286 - 352
Target Start/End: Complemental strand, 30098361 - 30098295
Alignment:
Q  286 tgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgttcggtgtccttgcttcat 352  Q
    ||||||||||||||||||||| |||||| |||| ||| ||||| ||||| |||||||| ||||||||    
T  30098361 tgaattatgtgattttctcaaattattaacggtttcgtcgtgtcagtgtccggtgtccgtgcttcat 30098295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 286 - 362
Target Start/End: Original strand, 19737506 - 19737582
Alignment:
Q  286 tgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgttcggtgtccttgcttcattgattgaaac 362  Q
    |||||||||| |||||||||| |||||| |||| || |||||| ||||| || |||||||||||||  |||||||||    
T  19737506 tgaattatgtaattttctcaaattattatcggtttcagcgtgtcagtgtccgttgtccttgcttcagagattgaaac 19737582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 284 - 328
Target Start/End: Original strand, 28588696 - 28588740
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgt 328  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||    
T  28588696 actgaattatgtgattttctcaaattattaccggtgtcggcgtgt 28588740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 284 - 327
Target Start/End: Complemental strand, 27932272 - 27932229
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtg 327  Q
    |||||||||||| |||||||||| ||||||||||||||||||||    
T  27932272 actgaattatgtaattttctcaaattattagcggtgtcggcgtg 27932229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 244 - 334
Target Start/End: Complemental strand, 39698616 - 39698528
Alignment:
Q  244 gtgttcgacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    |||| ||||||| ||||||||||||||| |  |||  || |||||||||||||||||| |||| |||||||| ||||| |||||| |||||    
T  39698616 gtgtccgacaccgacacgacactgacacttgtaat--tacactgaattatgtgattttttcaaattattagctgtgtcagcgtgtcagtgt 39698528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 288 - 334
Target Start/End: Complemental strand, 27144496 - 27144450
Alignment:
Q  288 aattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    ||||||||||||| ||||| ||||||||||||||||||||| |||||    
T  27144496 aattatgtgatttcctcaaattattagcggtgtcggcgtgtcagtgt 27144450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 289 - 334
Target Start/End: Complemental strand, 17123080 - 17123035
Alignment:
Q  289 attatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    |||||||||||||||||| ||||||||||||| ||||||| |||||    
T  17123080 attatgtgattttctcaaattattagcggtgttggcgtgtcagtgt 17123035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 286 - 334
Target Start/End: Complemental strand, 31084358 - 31084310
Alignment:
Q  286 tgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    |||||||||||||||| |||| |||||||| |||||||||||| |||||    
T  31084358 tgaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgt 31084310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 334
Target Start/End: Complemental strand, 2436956 - 2436909
Alignment:
Q  287 gaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    |||||||||||||||  ||| ||||||||||||||||||||| |||||    
T  2436956 gaattatgtgatttttgcaaattattagcggtgtcggcgtgtcagtgt 2436909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 334
Target Start/End: Complemental strand, 6035585 - 6035470
Alignment:
Q  216 acactccttagattaagcgtgtccccatgtgttcgacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagc 315  Q
    |||||||| |||||| |||||||||   ||||  | |||| ||||||||| |||| ||| |||  || |||||||||| | |||| ||||| ||||||||    
T  6035585 acactcctcagattaggcgtgtcccggcgtgtctgtcaccgacacgacaccgacaaatataat--tacactgaattatattattt-ctcaaattattagc 6035489  T
Q  316 ggtgtcggcgtgtaagtgt 334  Q
    ||||||||||||| |||||    
T  6035488 ggtgtcggcgtgtcagtgt 6035470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 284 - 334
Target Start/End: Complemental strand, 6247659 - 6247609
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    |||||||||||||||||| |||| |||||||  |||||||||||| |||||    
T  6247659 actgaattatgtgattttttcaaattattagatgtgtcggcgtgtcagtgt 6247609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 284 - 334
Target Start/End: Original strand, 6326319 - 6326369
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    |||||||||||| |||||||||| ||| ||||| ||||||||||| |||||    
T  6326319 actgaattatgtaattttctcaaattactagcgatgtcggcgtgtcagtgt 6326369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 288 - 334
Target Start/End: Complemental strand, 14674302 - 14674256
Alignment:
Q  288 aattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    |||||||||||||| |||| |||||||| |||||||||||| |||||    
T  14674302 aattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgt 14674256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 288 - 326
Target Start/End: Complemental strand, 19579734 - 19579696
Alignment:
Q  288 aattatgtgattttctcaatttattagcggtgtcggcgt 326  Q
    ||||||||||||||||||| |||||||| ||||||||||    
T  19579734 aattatgtgattttctcaaattattagctgtgtcggcgt 19579696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 284 - 334
Target Start/End: Original strand, 21191078 - 21191128
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    |||||||||||||||||| |||| |||||||| |||||||| ||| |||||    
T  21191078 actgaattatgtgattttttcaaattattagctgtgtcggcatgtcagtgt 21191128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 321
Target Start/End: Original strand, 6471911 - 6471948
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtc 321  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  6471911 actgaattatgtgattttctcaaattattagccgtgtc 6471948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 327
Target Start/End: Complemental strand, 9449504 - 9449463
Alignment:
Q  286 tgaattatgtgattttctcaatttattagcggtgtcggcgtg 327  Q
    ||||||||||||||||||||| ||||||  ||||||||||||    
T  9449504 tgaattatgtgattttctcaaattattattggtgtcggcgtg 9449463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 337
Target Start/End: Original strand, 21576767 - 21576820
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgttcg 337  Q
    |||||||||||||||||| |||| |||||||| |||| ||||| | ||||||||    
T  21576767 actgaattatgtgattttttcaaattattagctgtgttggcgtatcagtgttcg 21576820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 324
Target Start/End: Complemental strand, 26716178 - 26716141
Alignment:
Q  287 gaattatgtgattttctcaatttattagcggtgtcggc 324  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  26716178 gaattatgtgattttctcaaattattagcagtgtcggc 26716141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 324
Target Start/End: Complemental strand, 26985918 - 26985881
Alignment:
Q  287 gaattatgtgattttctcaatttattagcggtgtcggc 324  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  26985918 gaattatgtgattttctcaaattattagcagtgtcggc 26985881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 320
Target Start/End: Original strand, 30502388 - 30502446
Alignment:
Q  260 cgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgt 320  Q
    |||||| |||||||| |||  || ||||||||| ||||||||||||| |||||||||||||    
T  30502388 cgacaccgacacatataat--tacactgaattaagtgattttctcaaattattagcggtgt 30502446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 320
Target Start/End: Original strand, 30542731 - 30542789
Alignment:
Q  260 cgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgt 320  Q
    |||||| |||||||| |||  || ||||||||| ||||||||||||| |||||||||||||    
T  30542731 cgacaccgacacatataat--tacactgaattaagtgattttctcaaattattagcggtgt 30542789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 323
Target Start/End: Original strand, 32766930 - 32767004
Alignment:
Q  247 ttcgacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcgg 323  Q
    ||||||||| |||||||||  ||||||| |||  || | |||||| || ||||||||||| ||||||||||||||||    
T  32766930 ttcgacaccgacacgacacaaacacatataat--tacattgaattgtgcgattttctcaaattattagcggtgtcgg 32767004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 320
Target Start/End: Complemental strand, 36838606 - 36838544
Alignment:
Q  256 aacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgt 320  Q
    |||||||||| |||||||| |||  || ||| |||||||| |||||||||| |||||||||||||    
T  36838606 aacacgacaccgacacatataat--tacactaaattatgtaattttctcaaattattagcggtgt 36838544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 284 - 336
Target Start/End: Complemental strand, 4344779 - 4344727
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgttc 336  Q
    |||||||||||| ||||| |||| |||||| ||||||| |||||| |||||||    
T  4344779 actgaattatgtcattttttcaaattattatcggtgtcagcgtgttagtgttc 4344727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 259 - 334
Target Start/End: Complemental strand, 11685999 - 11685926
Alignment:
Q  259 acgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    ||||||| |||||||| |||  || ||| ||||||| || |||||||| ||||||||||||||||| ||| |||||    
T  11685999 acgacaccgacacatataat--tacactaaattatgcgactttctcaaattattagcggtgtcggcatgtcagtgt 11685926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 284 - 328
Target Start/End: Complemental strand, 34879387 - 34879343
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgt 328  Q
    |||||||||| |||||||||||| || ||||||||| ||||||||    
T  34879387 actgaattatatgattttctcaaatttttagcggtgccggcgtgt 34879343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 288 - 328
Target Start/End: Complemental strand, 35017070 - 35017030
Alignment:
Q  288 aattatgtgattttctcaatttattagcggtgtcggcgtgt 328  Q
    ||||||||||||||||||| ||||||| ||| |||||||||    
T  35017070 aattatgtgattttctcaaattattagtggtttcggcgtgt 35017030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 296 - 328
Target Start/End: Original strand, 38816729 - 38816761
Alignment:
Q  296 gattttctcaatttattagcggtgtcggcgtgt 328  Q
    ||||||||||| |||||||||||||||||||||    
T  38816729 gattttctcaaattattagcggtgtcggcgtgt 38816761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 284 - 328
Target Start/End: Complemental strand, 21616799 - 21616755
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgt 328  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  21616799 actgaattatgtgattttctcaaattattagcggtgtcggcgtgt 21616755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 284 - 335
Target Start/End: Original strand, 21782840 - 21782891
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgtt 335  Q
    ||||||||||||||||||||||| |||||||| |||||||||||| ||||||    
T  21782840 actgaattatgtgattttctcaaattattagcagtgtcggcgtgtcagtgtt 21782891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 251 - 321
Target Start/End: Complemental strand, 44860388 - 44860320
Alignment:
Q  251 acaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtc 321  Q
    ||||||||||||||| |||||||| |||  || ||||||||||| ||||||||||| ||||||||||||||    
T  44860388 acaccaacacgacaccgacacatataat--tacactgaattatgcgattttctcaaattattagcggtgtc 44860320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 289 - 334
Target Start/End: Complemental strand, 31284080 - 31284035
Alignment:
Q  289 attatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||    
T  31284080 attatgtgattttctcaaattattagcagtgtcggcgtgtaagtgt 31284035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 284 - 324
Target Start/End: Original strand, 37411266 - 37411306
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggc 324  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  37411266 actgaattatgtgattttctcaaattattagcggtgtcggc 37411306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 244 - 322
Target Start/End: Original strand, 18889575 - 18889651
Alignment:
Q  244 gtgttcgacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcg 322  Q
    |||| |||||| |||| ||||| ||||||||  ||  || |||||||||||||||||||||||||||||||||| ||||    
T  18889575 gtgtccgacacaaacaagacaccgacacatatgat--tacactgaattatgtgattttctcaatttattagcggcgtcg 18889651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 334
Target Start/End: Complemental strand, 23718063 - 23718013
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    |||||||||||||| |||||||| |||||||||||||||| |||| |||||    
T  23718063 actgaattatgtgactttctcaaattattagcggtgtcggtgtgtcagtgt 23718013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 334
Target Start/End: Complemental strand, 24105735 - 24105685
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    |||||||||||||| |||||||| |||||||||||||||| |||| |||||    
T  24105735 actgaattatgtgactttctcaaattattagcggtgtcggtgtgtcagtgt 24105685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 326
Target Start/End: Complemental strand, 28677946 - 28677904
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgt 326  Q
    |||||||||||||||||| |||| |||||||||||||||||||    
T  28677946 actgaattatgtgattttttcaaattattagcggtgtcggcgt 28677904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 284 - 352
Target Start/End: Complemental strand, 24894426 - 24894357
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgttcg-gtgtccttgcttcat 352  Q
    |||||||||||||||||| | || |||||||| |||||||||||| ||||| || |||||| ||||||||    
T  24894426 actgaattatgtgatttttttaaattattagctgtgtcggcgtgtcagtgtccgtgtgtccgtgcttcat 24894357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 262 - 334
Target Start/End: Complemental strand, 31808134 - 31808064
Alignment:
Q  262 acactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    ||||||||||||| |||  || |||||||||||||||||| | || |||||||||||||||| |||| |||||    
T  31808134 acactgacacatataat--tacactgaattatgtgattttgttaaattattagcggtgtcggtgtgtcagtgt 31808064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 284 - 324
Target Start/End: Complemental strand, 18276558 - 18276518
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggc 324  Q
    ||||||||| ||||||||||||| |||||||||||||||||    
T  18276558 actgaattaagtgattttctcaaattattagcggtgtcggc 18276518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 284 - 326
Target Start/End: Original strand, 10535781 - 10535823
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgt 326  Q
    |||||||||||| |||||||||| |||||| ||||||||||||    
T  10535781 actgaattatgtcattttctcaaattattatcggtgtcggcgt 10535823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 286 - 328
Target Start/End: Original strand, 18420458 - 18420500
Alignment:
Q  286 tgaattatgtgattttctcaatttattagcggtgtcggcgtgt 328  Q
    ||||||||||||||||||||| |||||||| |||| |||||||    
T  18420458 tgaattatgtgattttctcaaattattagcagtgttggcgtgt 18420500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 284 - 334
Target Start/End: Original strand, 21374721 - 21374771
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    |||||||||||| ||||| |||| |||||||| |||||||||||| |||||    
T  21374721 actgaattatgtaattttttcaaattattagctgtgtcggcgtgttagtgt 21374771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 284 - 334
Target Start/End: Original strand, 30404872 - 30404922
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    |||||||||||||||||| |||| |||||| | |||||||||||| |||||    
T  30404872 actgaattatgtgattttttcaaattattaaccgtgtcggcgtgtcagtgt 30404922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 324
Target Start/End: Original strand, 36409619 - 36409689
Alignment:
Q  250 gacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggc 324  Q
    |||||||||| ||||| |||||||||    ||| ||| |||||||||||||| |||| |||| ||||||||||||    
T  36409619 gacaccaacatgacaccgacacataa----ttacactaaattatgtgattttttcaaattatcagcggtgtcggc 36409689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 286 - 334
Target Start/End: Complemental strand, 896246 - 896198
Alignment:
Q  286 tgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    |||| ||||||||||||||||  ||||||| |||||||||||| |||||    
T  896246 tgaaatatgtgattttctcaaactattagcagtgtcggcgtgtcagtgt 896198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 284 - 328
Target Start/End: Complemental strand, 19574015 - 19573971
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgt 328  Q
    |||||||||||| ||||||| || |||||| ||||||||||||||    
T  19574015 actgaattatgttattttcttaaattattatcggtgtcggcgtgt 19573971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 279 - 335
Target Start/End: Original strand, 35447904 - 35447960
Alignment:
Q  279 gttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgtt 335  Q
    |||| |||||||||||| |||||||  | ||||||||| |||| |||||||||||||    
T  35447904 gttatactgaattatgtaattttctttaattattagcgatgtcagcgtgtaagtgtt 35447960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 243 - 334
Target Start/End: Original strand, 36756327 - 36756416
Alignment:
Q  243 tgtgttcgacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    |||||||||||| |||||||||| ||||| || ||  ||| |||||||||||| ||||  |||| |||||||  |||||| ||||| |||||    
T  36756327 tgtgttcgacactaacacgacaccgacacttataa--ttacactgaattatgttatttcttcaaattattagttgtgtcgacgtgtcagtgt 36756416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 286 - 334
Target Start/End: Complemental strand, 37559012 - 37558964
Alignment:
Q  286 tgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    ||||||||||||||||  ||| |||||||| |||||||||||| |||||    
T  37559012 tgaattatgtgatttttacaaattattagctgtgtcggcgtgtcagtgt 37558964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 284 - 328
Target Start/End: Original strand, 42832298 - 42832342
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgt 328  Q
    |||||| ||||| |||||||||| |||||||||||||||| ||||    
T  42832298 actgaaatatgtaattttctcaaattattagcggtgtcggtgtgt 42832342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 284 - 334
Target Start/End: Complemental strand, 92844 - 92794
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    |||||||||||| |||||||||| ||||||||||||||||||||| |||||    
T  92844 actgaattatgtaattttctcaaattattagcggtgtcggcgtgtcagtgt 92794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 284 - 336
Target Start/End: Original strand, 4987313 - 4987365
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgttc 336  Q
    |||||||||||||||||| |||| |||||||| |||||||||||| |||||||    
T  4987313 actgaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgttc 4987365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 249 - 328
Target Start/End: Original strand, 8039824 - 8039901
Alignment:
Q  249 cgacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgt 328  Q
    ||||||| ||||||||| |||||||| |||  || |||||||||| | |||||||||| ||||||||||||| |||||||    
T  8039824 cgacaccgacacgacaccgacacatataat--tacactgaattatataattttctcaaattattagcggtgttggcgtgt 8039901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 284 - 328
Target Start/End: Complemental strand, 8383294 - 8383250
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgt 328  Q
    |||||||||| |||||||||||| |||||||||||||||||||||    
T  8383294 actgaattatatgattttctcaaattattagcggtgtcggcgtgt 8383250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 259 - 334
Target Start/End: Complemental strand, 26290431 - 26290358
Alignment:
Q  259 acgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    |||||||||||||||| |||  ||||| ||| |||||||||||||||| ||||||  ||||||||||||| |||||    
T  26290431 acgacactgacacatataat--taaaccgaactatgtgattttctcaaattattaatggtgtcggcgtgtcagtgt 26290358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 280 - 355
Target Start/End: Original strand, 8412963 - 8413038
Alignment:
Q  280 ttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgttcggtgtccttgcttcattga 355  Q
    ||||||||||||||||| ||||||||| |||||||  |||||||  ||| | ||| |||||||| |||||||||||    
T  8412963 ttaaactgaattatgtgtttttctcaaattattagttgtgtcggtctgtcaatgtccggtgtccgtgcttcattga 8413038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 328
Target Start/End: Original strand, 5407271 - 5407313
Alignment:
Q  286 tgaattatgtgattttctcaatttattagcggtgtcggcgtgt 328  Q
    ||||||||||||||||||||| || ||||||||||||||||||    
T  5407271 tgaattatgtgattttctcaaatttttagcggtgtcggcgtgt 5407313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 284 - 333
Target Start/End: Original strand, 10690284 - 10690333
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtg 333  Q
    ||||||||||||||||||||||  |||||||||||||| | |||||||||    
T  10690284 actgaattatgtgattttctcagattattagcggtgtccgagtgtaagtg 10690333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 284 - 337
Target Start/End: Complemental strand, 10954989 - 10954936
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgttcg 337  Q
    |||||||||||||||||| |||| |||||||  |||||||||||| ||||||||    
T  10954989 actgaattatgtgattttttcaaattattagttgtgtcggcgtgtcagtgttcg 10954936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 260 - 328
Target Start/End: Original strand, 49505154 - 49505220
Alignment:
Q  260 cgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgt 328  Q
    ||||||||||||||| |||  || ||| ||||||||||||||||||| ||||||||||| || ||||||    
T  49505154 cgacactgacacatataat--tacactaaattatgtgattttctcaaattattagcggtctctgcgtgt 49505220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 286 - 334
Target Start/End: Original strand, 5441055 - 5441103
Alignment:
Q  286 tgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    ||||||||||||||||||||| || ||||||||| |||||||| |||||    
T  5441055 tgaattatgtgattttctcaaatttttagcggtgacggcgtgtcagtgt 5441103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 260 - 323
Target Start/End: Complemental strand, 7928509 - 7928448
Alignment:
Q  260 cgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcgg 323  Q
    |||||| |||||||| |||  || |||||||||||||||||| |||| ||||||||||||||||    
T  7928509 cgacaccgacacatataat--tacactgaattatgtgattttttcaaattattagcggtgtcgg 7928448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 284 - 328
Target Start/End: Complemental strand, 12704044 - 12704000
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgt 328  Q
    ||||||||||||| ||||||||| ||||||| |||||||||||||    
T  12704044 actgaattatgtgcttttctcaaattattagtggtgtcggcgtgt 12704000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 284 - 328
Target Start/End: Original strand, 34307802 - 34307846
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgt 328  Q
    |||||| |||||||||||||||| |||||||||||||| ||||||    
T  34307802 actgaaatatgtgattttctcaaattattagcggtgtcagcgtgt 34307846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 286 - 334
Target Start/End: Complemental strand, 40052367 - 40052319
Alignment:
Q  286 tgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    |||||||||||||||| |||| |||||||| |||||||||||| |||||    
T  40052367 tgaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgt 40052319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 334
Target Start/End: Original strand, 2620070 - 2620125
Alignment:
Q  279 gttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    |||| ||| ||||||||||||||||||| | ||||| ||||||||||||| |||||    
T  2620070 gttacacttaattatgtgattttctcaaatgattagtggtgtcggcgtgtcagtgt 2620125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 334
Target Start/End: Complemental strand, 9800074 - 9800027
Alignment:
Q  287 gaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    ||||||||| |||||||||| ||||||| ||||||||||||| |||||    
T  9800074 gaattatgtaattttctcaaattattagaggtgtcggcgtgtcagtgt 9800027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 323
Target Start/End: Original strand, 11313797 - 11313861
Alignment:
Q  257 acacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcgg 323  Q
    |||||||||| ||||||| |||  || ||| ||||||||||||||||||| |||||||| |||||||    
T  11313797 acacgacactaacacatataat--tacactaaattatgtgattttctcaaattattagcagtgtcgg 11313861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 327
Target Start/End: Complemental strand, 14979218 - 14979175
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtg 327  Q
    |||||||||||||||||| |||| |||||||| |||||||||||    
T  14979218 actgaattatgtgattttttcaaattattagctgtgtcggcgtg 14979175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 244 - 328
Target Start/End: Complemental strand, 25064982 - 25064902
Alignment:
Q  244 gtgttcgacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgt 328  Q
    |||| |||||||||||||| ||  ||||||||    ||| ||| |||||||||||||| |||| | |||||||||||||||||||    
T  25064982 gtgtccgacaccaacacgataccaacacataa----ttacactaaattatgtgattttttcaaatcattagcggtgtcggcgtgt 25064902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 284 - 334
Target Start/End: Complemental strand, 1438841 - 1438791
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    ||||||||||||||||||||||| || |||||| |||||| |||| |||||    
T  1438841 actgaattatgtgattttctcaaattgttagcgatgtcggtgtgtcagtgt 1438791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 284 - 334
Target Start/End: Complemental strand, 21479155 - 21479105
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    |||||||| ||||||||| |||| |||||||| |||||||||||| |||||    
T  21479155 actgaattgtgtgattttttcaaattattagctgtgtcggcgtgtcagtgt 21479105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 284 - 334
Target Start/End: Complemental strand, 21720801 - 21720751
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    ||||||||||| ||| ||||||| |||||| |||||||||||||| |||||    
T  21720801 actgaattatgagatattctcaaattattatcggtgtcggcgtgtcagtgt 21720751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 328
Target Start/End: Complemental strand, 14209188 - 14209106
Alignment:
Q  244 gtgttcgacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgt 328  Q
    |||| ||||||| ||||||||||||||| |  |||  || |||||||||||||||||| | || |||||||  ||||||||||||    
T  14209188 gtgtccgacaccgacacgacactgacacttgtaat--tacactgaattatgtgattttttaaaattattagttgtgtcggcgtgt 14209106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 324
Target Start/End: Complemental strand, 24633800 - 24633763
Alignment:
Q  287 gaattatgtgattttctcaatttattagcggtgtcggc 324  Q
    |||||||||||||||||||| ||||||| |||||||||    
T  24633800 gaattatgtgattttctcaaattattagtggtgtcggc 24633763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 334
Target Start/End: Complemental strand, 28678372 - 28678290
Alignment:
Q  250 gacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    |||||||||||||||| |||||||| ||  ||| ||| |||||||||||||| | || |||||||| | |||||| ||| |||||    
T  28678372 gacaccaacacgacaccgacacatacaa--ttatactaaattatgtgattttattaaattattagcagcgtcggcatgtcagtgt 28678290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 337
Target Start/End: Original strand, 32429402 - 32429455
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgttcg 337  Q
    |||||||||||||||||||| || ||||||||| |||||| |||| | ||||||    
T  32429402 actgaattatgtgattttcttaaattattagcgttgtcggagtgtcaatgttcg 32429455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 284 - 328
Target Start/End: Original strand, 4990989 - 4991033
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgt 328  Q
    |||||||||||| ||||||||||  ||||||||||||||| ||||    
T  4990989 actgaattatgtaattttctcaaactattagcggtgtcggagtgt 4991033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 284 - 328
Target Start/End: Original strand, 11493383 - 11493427
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgt 328  Q
    ||||||||||||||||||||||  ||||||| ||||||| |||||    
T  11493383 actgaattatgtgattttctcacattattagtggtgtcgacgtgt 11493427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 284 - 328
Target Start/End: Complemental strand, 11610558 - 11610514
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgt 328  Q
    |||||||||||||||||| | || ||||||||||||| |||||||    
T  11610558 actgaattatgtgatttttttaaattattagcggtgttggcgtgt 11610514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 255 - 334
Target Start/End: Complemental strand, 11666008 - 11665931
Alignment:
Q  255 caacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    ||||||||||| |||||||| ||  ||| ||| |||| ||||||||| |||| ||||||||| |||||| |||| |||||    
T  11666008 caacacgacaccgacacatataa--ttacactaaattgtgtgattttatcaaattattagcgttgtcggtgtgttagtgt 11665931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 286 - 334
Target Start/End: Complemental strand, 14829724 - 14829677
Alignment:
Q  286 tgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    |||||||||||||||| |||| |||||||| |||||||||||| |||||    
T  14829724 tgaattatgtgatttt-tcaaattattagctgtgtcggcgtgtcagtgt 14829677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 284 - 328
Target Start/End: Original strand, 16192772 - 16192816
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgt 328  Q
    |||||||||||| |||||||||| |||||| ||||||||| ||||    
T  16192772 actgaattatgttattttctcaaattattaacggtgtcggtgtgt 16192816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 284 - 328
Target Start/End: Original strand, 23870581 - 23870625
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgt 328  Q
    |||||||||| ||||||| |||| ||||||||||||||| |||||    
T  23870581 actgaattatatgattttttcaaattattagcggtgtcgacgtgt 23870625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 288 - 328
Target Start/End: Complemental strand, 25074822 - 25074782
Alignment:
Q  288 aattatgtgattttctcaatttattagcggtgtcggcgtgt 328  Q
    |||||||| |||||||||| |||||| ||||||||||||||    
T  25074822 aattatgtcattttctcaaattattatcggtgtcggcgtgt 25074782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 284 - 328
Target Start/End: Complemental strand, 26508147 - 26508103
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgt 328  Q
    |||||||||||||||||| |||| |||||||| ||||| ||||||    
T  26508147 actgaattatgtgattttttcaaattattagctgtgtcagcgtgt 26508103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 284 - 328
Target Start/End: Complemental strand, 28918038 - 28917994
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgt 328  Q
    |||||||||||||||||| |||| ||||||||  |||||||||||    
T  28918038 actgaattatgtgattttttcaaattattagctatgtcggcgtgt 28917994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 288 - 324
Target Start/End: Original strand, 32804566 - 32804602
Alignment:
Q  288 aattatgtgattttctcaatttattagcggtgtcggc 324  Q
    ||||||||||||||||||| |||||| ||||||||||    
T  32804566 aattatgtgattttctcaaattattaacggtgtcggc 32804602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 284 - 328
Target Start/End: Complemental strand, 34910354 - 34910310
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgt 328  Q
    |||||||||||||||||| |||| |||||||  ||||||||||||    
T  34910354 actgaattatgtgattttttcaaattattagttgtgtcggcgtgt 34910310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 250 - 324
Target Start/End: Original strand, 9737 - 9809
Alignment:
Q  250 gacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggc 324  Q
    |||||||||||||||| |||||||| |||  || ||||||||| ||||||||||||| ||||||| || ||||||    
T  9737 gacaccaacacgacaccgacacatataat--tacactgaattaagtgattttctcaaattattagtggcgtcggc 9809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1528 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold1528
Description:

Target: scaffold1528; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 251 - 328
Target Start/End: Complemental strand, 1103 - 1028
Alignment:
Q  251 acaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgt 328  Q
    ||||| |||| ||||||||||||| |  |||| |||||||||||| ||||| |||| |||||||||||||||| ||||    
T  1103 acaccgacaccacactgacacatata--gttacactgaattatgtaattttttcaaattattagcggtgtcggtgtgt 1028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 334
Target Start/End: Complemental strand, 13437 - 13387
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    ||||||||||||||||||||||| |||||||  |||||||||||| |||||    
T  13437 actgaattatgtgattttctcaaattattagttgtgtcggcgtgtcagtgt 13387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 334
Target Start/End: Original strand, 21890 - 21940
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    ||||||||||||||||||||||| |||||||  |||||||||||| |||||    
T  21890 actgaattatgtgattttctcaaattattagttgtgtcggcgtgtcagtgt 21940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 334
Target Start/End: Complemental strand, 51848 - 51798
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    |||||||||||||||||| |||| |||||||| |||||||||||| |||||    
T  51848 actgaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgt 51798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 252 - 328
Target Start/End: Complemental strand, 20239 - 20165
Alignment:
Q  252 caccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgt 328  Q
    |||| ||||||||||||||| |  |||  || |||||||||||||||||| |||| |||||||| ||||||||||||    
T  20239 caccgacacgacactgacacttgtaat--tacactgaattatgtgattttttcaaattattagctgtgtcggcgtgt 20165  T

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Target: scaffold0044 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 284 - 328
Target Start/End: Complemental strand, 53217 - 53173
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgt 328  Q
    ||||||||||||||||||||||| ||||| ||||| |||||||||    
T  53217 actgaattatgtgattttctcaaattattggcggtatcggcgtgt 53173  T

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Target: scaffold0020 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 328
Target Start/End: Original strand, 135309 - 135378
Alignment:
Q  257 acacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgt 328  Q
    ||||||||| |||||||| |||  || || |||||||||||||||||||| |||||||| ||||||| ||||    
T  135309 acacgacaccgacacatataat--tacacagaattatgtgattttctcaaattattagcagtgtcggtgtgt 135378  T

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Target: scaffold0123 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 251 - 321
Target Start/End: Original strand, 44516 - 44584
Alignment:
Q  251 acaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtc 321  Q
    ||||| |||||| || |||||||| |||  || ||||||||||||||||||||||| || |||||||||||    
T  44516 acaccgacacgataccgacacatataat--tacactgaattatgtgattttctcaaatttttagcggtgtc 44584  T

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Target: scaffold0110 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 337
Target Start/End: Complemental strand, 28885 - 28834
Alignment:
Q  286 tgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgttcg 337  Q
    ||||||||| |||||||| || |||||| |||||||||||||| ||||||||    
T  28885 tgaattatgcgattttcttaaattattaacggtgtcggcgtgttagtgttcg 28834  T

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Target: scaffold0018 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 334
Target Start/End: Original strand, 192274 - 192321
Alignment:
Q  287 gaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    ||||||||| |||||||||| |||||| |||||||||||||| |||||    
T  192274 gaattatgtaattttctcaaattattaacggtgtcggcgtgtcagtgt 192321  T

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Target: scaffold0008 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 320
Target Start/End: Original strand, 263362 - 263430
Alignment:
Q  250 gacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgt 320  Q
    |||||| ||||||||||||||| || |||  || ||||||||||||| ||||||||| |||||||| ||||    
T  263362 gacaccgacacgacactgacacttataat--tacactgaattatgtggttttctcaaattattagcagtgt 263430  T

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Target: scaffold0003 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 244 - 334
Target Start/End: Complemental strand, 241669 - 241581
Alignment:
Q  244 gtgttcgacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggcgtgtaagtgt 334  Q
    |||| ||||||||||||||||| |||||  | |||  || ||| ||||||||||||||  ||| |||||||| |||||||||||| |||||    
T  241669 gtgtccgacaccaacacgacaccgacactcataat--tacactaaattatgtgatttttccaaattattagctgtgtcggcgtgtcagtgt 241581  T

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Target: scaffold0085 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 286 - 328
Target Start/End: Complemental strand, 26428 - 26386
Alignment:
Q  286 tgaattatgtgattttctcaatttattagcggtgtcggcgtgt 328  Q
    ||||||||||||||||||||| ||||||| ||||||| |||||    
T  26428 tgaattatgtgattttctcaaattattagtggtgtcgacgtgt 26386  T

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Target: scaffold0136 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 324
Target Start/End: Original strand, 3833 - 3911
Alignment:
Q  244 gtgttcgacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtgtcggc 324  Q
    |||| ||||||||||||||||||||||| |  ||  ||| |||||||||||||||||| | || |||||| | ||||||||    
T  3833 gtgtccgacaccaacacgacactgacacttgtaa--ttacactgaattatgtgatttttttaaattattaaccgtgtcggc 3911  T

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Target: scaffold0024 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 319
Target Start/End: Original strand, 68225 - 68299
Alignment:
Q  243 tgtgttcgacaccaacacgacactgacacataaaatgttaaactgaattatgtgattttctcaatttattagcggtg 319  Q
    ||||||||||||| | ||||||||||||| || ||  ||| ||| |||||| |||||||||||| |||||| |||||    
T  68225 tgtgttcgacaccgatacgacactgacacctataa--ttatactaaattatatgattttctcaaattattaacggtg 68299  T

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Target: scaffold0697 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0697
Description:

Target: scaffold0697; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 288 - 328
Target Start/End: Complemental strand, 1677 - 1637
Alignment:
Q  288 aattatgtgattttctcaatttattagcggtgtcggcgtgt 328  Q
    |||||| |||||||||||| |||||| ||||||||||||||    
T  1677 aattatatgattttctcaaattattaacggtgtcggcgtgt 1637  T

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Target: scaffold0361 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 284 - 328
Target Start/End: Complemental strand, 14567 - 14523
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgt 328  Q
    |||||||||||||||||| |||| |||||||  ||||||||||||    
T  14567 actgaattatgtgattttttcaaattattagttgtgtcggcgtgt 14523  T

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Target: scaffold0066 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 284 - 328
Target Start/End: Original strand, 33385 - 33429
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgt 328  Q
    |||||||||||| ||||| |||| |||||||| ||||||||||||    
T  33385 actgaattatgttattttttcaaattattagctgtgtcggcgtgt 33429  T

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Target: scaffold0049 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 284 - 320
Target Start/End: Complemental strand, 63810 - 63774
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgt 320  Q
    |||||||||||| |||||||||| |||||||||||||    
T  63810 actgaattatgtaattttctcaaattattagcggtgt 63774  T

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Target: scaffold0027 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 284 - 328
Target Start/End: Complemental strand, 46719 - 46675
Alignment:
Q  284 actgaattatgtgattttctcaatttattagcggtgtcggcgtgt 328  Q
    |||||||||||||||||| |||| |||||| | ||||||||||||    
T  46719 actgaattatgtgattttttcaaattattaactgtgtcggcgtgt 46675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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