View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18282_low_7 (Length: 570)
Name: NF18282_low_7
Description: NF18282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18282_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-156; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 1 - 453
Target Start/End: Original strand, 2637457 - 2637927
Alignment:
| Q |
1 |
atcaatgaagattaggaaattataagtgtaaaaatatcattgtgttgactacgaatttacttttgtgagccnnnnnnnnnnnnnnnnnggcttctcaa-- |
98 |
Q |
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| T |
2637457 |
atcaatgaagattatgaaattataagtgtaacaatatcattgtgttgactaagaatttacttttgtgagccaaaacaaaaaacaaaaaggcttctcaatt |
2637556 |
T |
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| Q |
99 |
---atctttttcaattcactgaataaagtcatcatgt---------------gagatgccacagaggtcaaacataagttgggtggttggaataatcaac |
180 |
Q |
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| T |
2637557 |
ttaatctttttcaattcactgaataaagtcatcatgtattaatttagatagtgagatgccacagaggtcaaacataagttgggtggttggaataatcaac |
2637656 |
T |
|
| Q |
181 |
cttttgcttacttgtatttgatttcgatttctcttttgtatatatcactagttttgatctattcaatgtatataaccatgtataatgctccaatatcatg |
280 |
Q |
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| T |
2637657 |
cttttgcttacttgtatttgatttcgatttctcttttgtatatatcactagttttgatctattcaatgtatataaccatgtataatgctccaatatcatg |
2637756 |
T |
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| Q |
281 |
taaactttttctgcttaaataacattttactgtcagctagtgagctttagnnnnnnntattttgaagtttcaattaaaaaactaagtaatttttcaaagt |
380 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||| |
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| T |
2637757 |
taaactttttctgcttaaataacattttactgccagctagtgagctttagaaaaaaata--ttgaagtttcaattaaaaaactaagtaattttttaaagt |
2637854 |
T |
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| Q |
381 |
ttatgggacccttcattagagtgtaacatgttgttcacgtaaacttaactcgattggtaagaataatgaataa |
453 |
Q |
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| T |
2637855 |
ttctgggacccttcattagagtgtaacatgttgtacacgtaaacttaactcggttggtaacgataatgaataa |
2637927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 521 - 557
Target Start/End: Original strand, 2638027 - 2638063
Alignment:
| Q |
521 |
tggttcggtttcatttcatgcgaaattggtgattttg |
557 |
Q |
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| T |
2638027 |
tggttcggtttcatttcatacgaaattgatgattttg |
2638063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 466 - 494
Target Start/End: Original strand, 24914270 - 24914298
Alignment:
| Q |
466 |
acaggttgggttgggttgggttgggttgg |
494 |
Q |
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| T |
24914270 |
acaggttgggttgggttgggttgggttgg |
24914298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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