View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18282_low_8 (Length: 553)
Name: NF18282_low_8
Description: NF18282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18282_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 464; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 9 - 488
Target Start/End: Original strand, 16977454 - 16977933
Alignment:
| Q |
9 |
acatcatcataatttacaacatcaagatcatcatgaagattcacactttcttttgctttactaacatttacatcatcatcagagacattttgcactgcct |
108 |
Q |
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| T |
16977454 |
acatcgtcataatttacaacatcaagatcatcatgaagattcacactttcttttgctttactaacatttacatcatcatcagagacattttgcactgccc |
16977553 |
T |
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| Q |
109 |
tttgtatatctgatatttccttctggtttgaagaagaagaagaaccctttattcgatctgaatgctccacttcatcagtgtgtacaaaagaatccttctt |
208 |
Q |
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| T |
16977554 |
tttgtatatctgatatttccttctggtttgaagaagaagaagaaccctttattcgatctgaatgctccacttcatcagtgtgtacaaaagaatccttctt |
16977653 |
T |
|
| Q |
209 |
cttctcaaaggcattagaaattgctacactaccataatctgaatgctcaacttcatcattgtttacagaaggatttttatcgctcatctcctcaccataa |
308 |
Q |
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| T |
16977654 |
cttctcaaaggcattagaaattgctacactaccataatctgaatgctcaacttcatcattgtttacagaaggatttttatcgctcatctcctcaccataa |
16977753 |
T |
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| Q |
309 |
tctgaatgctccatttcaccattgtttacataaggacttttatccttcatctcctcattctttgtggaagatggaatattttcaacgtttatctcctcat |
408 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
16977754 |
tctgaatgctccatttcaccattgtttacagaaggacttttatccttcatctcctcattctttgtggaagatggactattttcaacgtttatctcctcat |
16977853 |
T |
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| Q |
409 |
cattcaatccagaaattccactttgtttatccatcacctctctaaccaaatcctcgaccacattcaagtattttctaccg |
488 |
Q |
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| T |
16977854 |
cattcaatccagaaattccactttgtttatccatcacctctctaaccaaatcctcgaccacattcaagtattttctaccg |
16977933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 206 - 302
Target Start/End: Complemental strand, 10601969 - 10601873
Alignment:
| Q |
206 |
cttcttctcaaaggcattagaaattgctacactaccataatctgaatgctcaacttcatcattgtttacagaaggatttttatcgctcatctcctca |
302 |
Q |
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| T |
10601969 |
cttcttctcaaaggtagtagaagttgctacactaccataatctgaatgctccacttcatcattctttatagaaggacttttatccttcacctcctca |
10601873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 302 - 367
Target Start/End: Complemental strand, 10601936 - 10601871
Alignment:
| Q |
302 |
accataatctgaatgctccatttcaccattgtttacataaggacttttatccttcatctcctcatt |
367 |
Q |
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| T |
10601936 |
accataatctgaatgctccacttcatcattctttatagaaggacttttatccttcacctcctcatt |
10601871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 369 - 456
Target Start/End: Original strand, 16968577 - 16968664
Alignment:
| Q |
369 |
tttgtggaagatggaatattttcaacgtttatctcctcatcattcaatccagaaattccactttgtttatccatcacctctctaacca |
456 |
Q |
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| T |
16968577 |
tttgtggaagatggactattctcaacattcacctcttcatcattcctctcagaaattccactttgtctatccattacctctctcacca |
16968664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 16977396 - 16977463
Alignment:
| Q |
20 |
atttacaacatcaagatcatcatgaagattcacactttcttttgctttactaacatttacatcatcat |
87 |
Q |
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| T |
16977396 |
atttacaacatcaaaatcatcacgaacattcacactttctttggttttgccaacatttacatcgtcat |
16977463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 418 - 485
Target Start/End: Original strand, 17008001 - 17008068
Alignment:
| Q |
418 |
cagaaattccactttgtttatccatcacctctctaaccaaatcctcgaccacattcaagtattttcta |
485 |
Q |
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| T |
17008001 |
cagaaattccacattgtctatccatcacctctctaatcaacttctccaccatattcaaatcttttcta |
17008068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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