View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18282_low_9 (Length: 509)
Name: NF18282_low_9
Description: NF18282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18282_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 7 - 494
Target Start/End: Original strand, 11173963 - 11174440
Alignment:
| Q |
7 |
cttcaatttgaagacgtgtttggtatctgataccaatacgacactgacacatatggttacattcagttacatctatttatcaaatcattacgagtgtcaa |
106 |
Q |
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| T |
11173963 |
cttcaaattgaagacgtgtttggtatctgataccaatacgacactgacacatat----------agttacagcaatttatcaaatcattacgagtgtcaa |
11174052 |
T |
|
| Q |
107 |
cgtgtcagtgttgtgttcggtgtttgtgtatgtgtcaatatattaaatagaactaaacaagtaaaaataatcaaagcttgtaatagtttttaaacatact |
206 |
Q |
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| T |
11174053 |
cgtgtcagtgttgtgtccagtgtttgtgtatgtgtcaatatattaaatagaactaaacaagtaaaaataatcaaagcttgtaatagtttttaaacatact |
11174152 |
T |
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| Q |
207 |
tgaagcgaattcgcttgagatcatttccaccatcaggaagagacaaaaaggtaacatcaactcccggctccacctcagccacccactctttgttttcctc |
306 |
Q |
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| T |
11174153 |
tgaagcgaattcgcttgagatcatttccaccatcaggaagagacaaaaaggtaacatcaactcccggctccacctcagccacccactctctgttttcctc |
11174252 |
T |
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| Q |
307 |
caccacagcctcaggttccgctacaatcggctcttgcaccgtaggagtttggttaccactagtcccccctataaacctctgatcagatcttccaccagtg |
406 |
Q |
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| T |
11174253 |
caccacagcctcaggttccgctacaaccggctcttgcaccgtaggagtttggttaccactagtcccccctataaacctctgatcagatcttccaccagtg |
11174352 |
T |
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| Q |
407 |
aaattgacaggcaagtcccaaggaggagttgaacctaagctcacacctcccatataagggcattgaatctcagaattgacttcagagt |
494 |
Q |
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| T |
11174353 |
aaattgacaggcaagtcccaaggaggagttgaacctaagctcacacctcccatataagggcattgaacctcagaattgacttcagagt |
11174440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 8e-16; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 202 - 273
Target Start/End: Complemental strand, 30221488 - 30221417
Alignment:
| Q |
202 |
atacttgaagcgaattcgcttgagatcatttccaccatcaggaagagacaaaaaggtaacatcaactcccgg |
273 |
Q |
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| T |
30221488 |
atacctgaagcgaattctcttgagatcatttccaccattaggaagagacacaaaggtaatatgaacccccgg |
30221417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 299
Target Start/End: Complemental strand, 18968504 - 18968429
Alignment:
| Q |
224 |
agatcatttccaccatcaggaagagacaaaaaggtaacatcaactcccggctccacctcagccacccactctttgt |
299 |
Q |
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| T |
18968504 |
agatcatttccaccattaggaagagagacaaagataacatcaacccctcgctccacctgcgccaaccactccttgt |
18968429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 294
Target Start/End: Complemental strand, 19006024 - 19005929
Alignment:
| Q |
199 |
aacatacttgaagcgaattcgcttgagatcatttccaccatcaggaagagacaaaaaggtaacatcaactcccggctccacctcagccacccactc |
294 |
Q |
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| T |
19006024 |
aacatacttgaagtgaattcttcttagatcatttccaccaataagaagatacacaaagataacatcagcccctggctccacctatgccacccactc |
19005929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 99 - 143
Target Start/End: Complemental strand, 5453715 - 5453671
Alignment:
| Q |
99 |
agtgtcaacgtgtcagtgttgtgttcggtgtttgtgtatgtgtca |
143 |
Q |
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| T |
5453715 |
agtgtctacgtgttagtgttgtgtttggtgtttgtgtatgtgtca |
5453671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 122
Target Start/End: Complemental strand, 43328533 - 43328449
Alignment:
| Q |
38 |
accaatacgacactgacacatatggttacattcagttacatctatttatcaaatcattacgagtgtcaacgtgtcagtgttgtgt |
122 |
Q |
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| T |
43328533 |
accaacacgacaatgacacatgtggttacattaaattatttcattttctcaaattattataagtgtcaacgtgtcagtgttgtgt |
43328449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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