View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18283_high_10 (Length: 306)
Name: NF18283_high_10
Description: NF18283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18283_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 4 - 120
Target Start/End: Original strand, 34011680 - 34011796
Alignment:
| Q |
4 |
ttcatagtaaaggcacctgcacagcagctatcaaccaaaatacaaacagatgaaattgaaccaacaaatagtgtgagtttgagctccgacgacttcttct |
103 |
Q |
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| T |
34011680 |
ttcatagtaaaggcacctgcacagcagctatcaaccaaaatacaaacagatgaaattgaaccaacaaatagtgtgagtttgagctccgacgacttcttct |
34011779 |
T |
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| Q |
104 |
ttgatctaaaactcatt |
120 |
Q |
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||||||||||||||||| |
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| T |
34011780 |
ttgatctaaaactcatt |
34011796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 221 - 306
Target Start/End: Original strand, 34011897 - 34011982
Alignment:
| Q |
221 |
cccataacttagttccaaattaatgtacgtaagtggagtgagagtagaggcatggcaacgtcattatactccaaaagctagctacc |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34011897 |
cccataacttagttccaaattaatgtacgtaagtggagtgagagtagaggcatggcaacgtcattatactccaaaagctagctacc |
34011982 |
T |
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