View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18283_high_3 (Length: 487)
Name: NF18283_high_3
Description: NF18283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18283_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 20 - 469
Target Start/End: Original strand, 34953116 - 34953573
Alignment:
| Q |
20 |
aataatgttattgagtatttagactag----ttgtagctgatacttaaaagttgatttagtacatgatggatgttaagagtaggaggattaatagtgcta |
115 |
Q |
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| T |
34953116 |
aataatgtcattgagtatttagactaggtagttgtagctgatacttaaaagttgatttagtacatgatggatgttaagagtaggaggattactagtgcta |
34953215 |
T |
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| Q |
116 |
atatacattatcatatg-------ggaagcatataccaaactaagtaactacaattaataattagtcattattgaggggaaggagcaaagtggagaaggt |
208 |
Q |
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| T |
34953216 |
atatacattatcatatcaagttgtggaagcatataccaaactaagtaactacaattaat---tagtcattattgaggggaaggagcaaagtggagaaggt |
34953312 |
T |
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| Q |
209 |
gttttgaattcagccatggcttaacaagcaccactgaatcaaacattgttggatctccaacaccatcactcttcgcttgtgtaacccatatcttcatata |
308 |
Q |
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| T |
34953313 |
gttttgaattcagccatggcttaacaagcaccactgaatcaaacattgttggatctccaacaccatcactcttcgcttgtgtaacccatatcttcatata |
34953412 |
T |
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| Q |
309 |
gtatttgatcccagaaactacttgttgttgcgcctccaccacttcaacaaaccttaactctccttccccttccttccatatcttcacactccggttatac |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34953413 |
gtatttgatcccagaaactacttgttgttgcgcctccaccacttccacaaaccttaactctccttccccttccttccatatcttcacactccggttatac |
34953512 |
T |
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| Q |
409 |
tcctccaccgcaaatcttcccagttcttgcacctcgtcgtttgttctcacgtttgcaacct |
469 |
Q |
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| T |
34953513 |
tcctccaccgcaaatcttcccagttcttgcacctcgtcgtttgttctcacgtttgcaacct |
34953573 |
T |
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