View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18283_high_7 (Length: 357)
Name: NF18283_high_7
Description: NF18283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18283_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 176; Significance: 9e-95; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 127 - 338
Target Start/End: Original strand, 9796278 - 9796489
Alignment:
| Q |
127 |
ccttctccatcaccacctatcataactccttccgcacctccacctttgacgcccccacctacgacacctccttccacaccaccgtcaattcctacgacac |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
9796278 |
ccttctccatcaccacctatcataactccttccgcacctccaccttcgacacccccacctacgacacctccttccacaccaccgtcaattcctaggacac |
9796377 |
T |
|
| Q |
227 |
ctccttctacaccaccaccgattccggtcacacccccgcaaaattgtaaccttttaaacttgaacatttgcgcaaacatattgaataatgcagttgggct |
326 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||| ||| |
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| T |
9796378 |
ctccttctacaccaccaccgattccggtgacacccccgcaaaattgtaaccttttaaacttgaacatttgcgccaaagtattgaataatgtagttgtgct |
9796477 |
T |
|
| Q |
327 |
caacccacgaaa |
338 |
Q |
| |
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|||||||||||| |
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| T |
9796478 |
caacccacgaaa |
9796489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 127 - 338
Target Start/End: Original strand, 9802279 - 9802490
Alignment:
| Q |
127 |
ccttctccatcaccacctatcataactccttccgcacctccacctttgacgcccccacctacgacacctccttccacaccaccgtcaattcctacgacac |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
9802279 |
ccttctccatcaccacctatcataactccttccgcacctccaccttcgacacccccacctacgacacctccttccacaccaccgtcaattcctaggacac |
9802378 |
T |
|
| Q |
227 |
ctccttctacaccaccaccgattccggtcacacccccgcaaaattgtaaccttttaaacttgaacatttgcgcaaacatattgaataatgcagttgggct |
326 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||| ||| |
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| T |
9802379 |
ctccttctacaccaccaccgattccggtgacacccccgcaaaattgtaaccttttaaacttgaacatttgcgccaaagtattgaataatgtagttgtgct |
9802478 |
T |
|
| Q |
327 |
caacccacgaaa |
338 |
Q |
| |
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|||||||||||| |
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| T |
9802479 |
caacccacgaaa |
9802490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 184 - 251
Target Start/End: Original strand, 9757151 - 9757218
Alignment:
| Q |
184 |
cctacgacacctccttccacaccaccgtcaattcctacgacacctccttctacaccaccaccgattcc |
251 |
Q |
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|||| |||||||||||| |||||||| ||||||||| ||||||||||| |||||||||||| ||||| |
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| T |
9757151 |
cctaggacacctccttcgacaccaccaccaattcctaggacacctccttttacaccaccaccaattcc |
9757218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 9796179 - 9796215
Alignment:
| Q |
1 |
tgtctttccacaccaccacctgttgatactccttcaa |
37 |
Q |
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| T |
9796179 |
tgtctttccacaccaccacctgttgatactccttcaa |
9796215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 9802168 - 9802204
Alignment:
| Q |
1 |
tgtctttccacaccaccacctgttgatactccttcaa |
37 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
9802168 |
tgtctttccacaccaccacctgttgatactccttcaa |
9802204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 251
Target Start/End: Original strand, 9757118 - 9757185
Alignment:
| Q |
184 |
cctacgacacctccttccacaccaccgtcaattcctacgacacctccttctacaccaccaccgattcc |
251 |
Q |
| |
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|||| |||||||||| |||||||||| ||| ||||| |||||||||||| ||||||||||| ||||| |
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| T |
9757118 |
cctaggacacctcctaccacaccaccaccaaatcctaggacacctccttcgacaccaccaccaattcc |
9757185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 184 - 251
Target Start/End: Original strand, 9756998 - 9757065
Alignment:
| Q |
184 |
cctacgacacctccttccacaccaccgtcaattcctacgacacctccttctacaccaccaccgattcc |
251 |
Q |
| |
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|||| |||||||||| ||||||||||| ||| ||||| |||||||||| | | ||||||||| ||||| |
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| T |
9756998 |
cctaggacacctcctaccacaccaccgacaaatcctaggacacctcctaccataccaccaccaattcc |
9757065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 245
Target Start/End: Original strand, 9756865 - 9756918
Alignment:
| Q |
192 |
acctccttccacaccaccgtcaattcctacgacacctccttctacaccaccacc |
245 |
Q |
| |
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||||||| |||||||||| ||| ||||| |||||||||||| ||||||||||| |
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| T |
9756865 |
acctcctaccacaccaccaccaaatcctatgacacctccttcgacaccaccacc |
9756918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 245
Target Start/End: Original strand, 9757031 - 9757092
Alignment:
| Q |
184 |
cctacgacacctccttccacaccaccgtcaattcctacgacacctccttctacaccaccacc |
245 |
Q |
| |
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|||| |||||||||| ||| |||||| ||||||||| |||||||||| | ||||||||||| |
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| T |
9757031 |
cctaggacacctcctaccataccaccaccaattcctaggacacctcctaccacaccaccacc |
9757092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 245
Target Start/End: Original strand, 9756775 - 9756831
Alignment:
| Q |
189 |
gacacctccttccacaccaccgtcaattcctacgacacctccttctacaccaccacc |
245 |
Q |
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|||||||||| ||||||||||| ||| ||| | |||||||||| | ||||||||||| |
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| T |
9756775 |
gacacctcctaccacaccaccgacaaatcccaggacacctcctaccacaccaccacc |
9756831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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