View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18283_low_1 (Length: 545)
Name: NF18283_low_1
Description: NF18283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18283_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 129; Significance: 2e-66; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 207 - 495
Target Start/End: Complemental strand, 4664750 - 4664467
Alignment:
| Q |
207 |
tgacagttgaatgtgattctaaaattacggttattgcagtcgattctatagtttaaaaaatatatattagctttcataacagccaaaactannnnnnnnn |
306 |
Q |
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| T |
4664750 |
tgacatttgaatgtgattctaaaattaaggttaatgcagtcgattctatagtttaaaaaataaatattaactttcataagag-----actatttttattt |
4664656 |
T |
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| Q |
307 |
nnnnnnnatctagaataatccgtcgtgatagagctaaatatcaagaacattttgtttgagttggatgccaaatttgtggtagatagttttcattcttcat |
406 |
Q |
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| T |
4664655 |
tatttttatccagaataacccgtcgtgatagagctaaatatcaagaaagtcttgtttgagttggatgccaaatttgtgctagatagttttcagtcttcat |
4664556 |
T |
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| Q |
407 |
caatcggaatttggtgtaattttagaagattagaaggttttgctaagtctttaattttaaaaatatcatgctgagttctcaaagatgtt |
495 |
Q |
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| T |
4664555 |
gaatcgaaatttggtgttattttagaagattataaaggtttgccaagtctttaaatttgacaatatcatgctgagttctcaaagatgtt |
4664467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 361 - 406
Target Start/End: Complemental strand, 4795862 - 4795817
Alignment:
| Q |
361 |
tttgagttggatgccaaatttgtggtagatagttttcattcttcat |
406 |
Q |
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| T |
4795862 |
tttgagttggatgtcaaatttgtggtagaaaattttcattcttcat |
4795817 |
T |
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