View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18283_low_11 (Length: 300)

Name: NF18283_low_11
Description: NF18283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18283_low_11
NF18283_low_11
[»] chr2 (25 HSPs)
chr2 (9-172)||(44760078-44760241)
chr2 (9-171)||(6404101-6404263)
chr2 (9-172)||(15911761-15911927)
chr2 (9-161)||(13278679-13278831)
chr2 (9-172)||(17308943-17309108)
chr2 (9-172)||(38703573-38703738)
chr2 (13-170)||(30490668-30490828)
chr2 (9-172)||(17137691-17137861)
chr2 (9-161)||(31994077-31994229)
chr2 (9-161)||(1209930-1210083)
chr2 (9-170)||(45117056-45117224)
chr2 (9-161)||(7942742-7942894)
chr2 (9-157)||(18137574-18137722)
chr2 (9-106)||(38207470-38207567)
chr2 (9-124)||(21485295-21485410)
chr2 (38-127)||(1114722-1114811)
chr2 (4-112)||(37127941-37128049)
chr2 (10-112)||(33945914-33946016)
chr2 (102-171)||(38208410-38208482)
chr2 (19-112)||(21649729-21649822)
chr2 (9-101)||(16739457-16739546)
chr2 (199-238)||(44929408-44929447)
chr2 (9-101)||(34906331-34906421)
chr2 (9-101)||(34948478-34948568)
chr2 (252-284)||(44929727-44929759)
[»] chr7 (20 HSPs)
chr7 (9-172)||(35794464-35794627)
chr7 (9-170)||(46254851-46255015)
chr7 (9-170)||(14816644-14816805)
chr7 (9-170)||(15263640-15263801)
chr7 (9-172)||(34847861-34848027)
chr7 (9-173)||(43458172-43458335)
chr7 (9-170)||(25529097-25529258)
chr7 (9-172)||(33950916-33951082)
chr7 (9-172)||(36312068-36312233)
chr7 (7-107)||(42321186-42321286)
chr7 (10-124)||(1852136-1852250)
chr7 (9-97)||(44863002-44863090)
chr7 (29-144)||(1377355-1377470)
chr7 (4-112)||(31326669-31326777)
chr7 (13-124)||(19646935-19647046)
chr7 (9-127)||(26188205-26188323)
chr7 (129-172)||(44866155-44866198)
chr7 (10-112)||(1906577-1906679)
chr7 (4-100)||(3601033-3601129)
chr7 (37-91)||(35585120-35585174)
[»] chr3 (27 HSPs)
chr3 (9-172)||(47646902-47647068)
chr3 (9-169)||(47013707-47013867)
chr3 (9-161)||(6936453-6936605)
chr3 (9-172)||(10509207-10509373)
chr3 (9-172)||(36402696-36402862)
chr3 (9-161)||(32529785-32529937)
chr3 (9-172)||(149312-149475)
chr3 (9-164)||(227615-227770)
chr3 (9-172)||(26502177-26502343)
chr3 (9-173)||(40937203-40937367)
chr3 (10-161)||(41193717-41193868)
chr3 (9-161)||(39353283-39353435)
chr3 (13-172)||(39586563-39586722)
chr3 (13-161)||(49166110-49166257)
chr3 (9-156)||(31765207-31765354)
chr3 (9-127)||(41174795-41174913)
chr3 (9-144)||(33843502-33843637)
chr3 (4-100)||(42899198-42899294)
chr3 (10-100)||(51328989-51329079)
chr3 (10-100)||(25214595-25214685)
chr3 (9-91)||(53393931-53394013)
chr3 (9-78)||(10494800-10494869)
chr3 (129-172)||(41182006-41182049)
chr3 (37-97)||(44207641-44207701)
chr3 (37-124)||(21979926-21980013)
chr3 (37-124)||(22002357-22002444)
chr3 (4-48)||(12717632-12717676)
[»] chr4 (34 HSPs)
chr4 (9-172)||(40728012-40728175)
chr4 (9-172)||(45229056-45229219)
chr4 (9-171)||(28780765-28780927)
chr4 (9-172)||(35158705-35158868)
chr4 (9-170)||(33281072-33281233)
chr4 (9-172)||(52416919-52417085)
chr4 (9-172)||(16023859-16024022)
chr4 (9-172)||(31093092-31093255)
chr4 (9-172)||(1602770-1602932)
chr4 (9-172)||(45462237-45462400)
chr4 (9-161)||(2013733-2013885)
chr4 (9-161)||(4189874-4190026)
chr4 (9-161)||(38551270-38551422)
chr4 (9-172)||(49374304-49374466)
chr4 (9-172)||(30003597-30003762)
chr4 (9-161)||(4048119-4048271)
chr4 (13-172)||(51538635-51538794)
chr4 (9-161)||(6963440-6963592)
chr4 (9-161)||(168540-168692)
chr4 (9-161)||(15542841-15542992)
chr4 (9-145)||(16451916-16452052)
chr4 (9-161)||(45924584-45924736)
chr4 (12-169)||(55136654-55136814)
chr4 (9-172)||(38218251-38218417)
chr4 (9-172)||(43841863-43842029)
chr4 (13-169)||(9036089-9036247)
chr4 (10-161)||(28310890-28311042)
chr4 (9-161)||(35319896-35320048)
chr4 (43-172)||(56463635-56463767)
chr4 (9-100)||(39807338-39807429)
chr4 (4-100)||(40602722-40602818)
chr4 (13-124)||(34953601-34953712)
chr4 (9-124)||(20516652-20516770)
chr4 (10-100)||(56084099-56084189)
[»] chr1 (30 HSPs)
chr1 (9-172)||(42882579-42882742)
chr1 (9-172)||(37952286-37952449)
chr1 (10-161)||(41091154-41091305)
chr1 (9-161)||(50261992-50262144)
chr1 (9-172)||(44496471-44496634)
chr1 (9-173)||(29961383-29961547)
chr1 (9-161)||(41900288-41900440)
chr1 (9-171)||(12700526-12700691)
chr1 (10-161)||(41086386-41086537)
chr1 (9-172)||(14587326-14587495)
chr1 (9-161)||(12528431-12528583)
chr1 (9-161)||(38860662-38860814)
chr1 (9-171)||(33801349-33801514)
chr1 (9-161)||(11952421-11952573)
chr1 (9-161)||(49851694-49851846)
chr1 (9-172)||(3517564-3517727)
chr1 (13-159)||(52632362-52632508)
chr1 (9-145)||(27216784-27216920)
chr1 (10-161)||(23984039-23984187)
chr1 (9-169)||(41723514-41723676)
chr1 (9-111)||(44757581-44757683)
chr1 (103-169)||(48964920-48964986)
chr1 (9-100)||(34549840-34549931)
chr1 (9-67)||(22858743-22858801)
chr1 (9-77)||(48964984-48965052)
chr1 (125-172)||(22858800-22858847)
chr1 (9-94)||(30518205-30518290)
chr1 (9-124)||(29913813-29913928)
chr1 (37-91)||(22334962-22335016)
chr1 (9-91)||(12524965-12525046)
[»] chr8 (22 HSPs)
chr8 (9-172)||(8239976-8240139)
chr8 (9-172)||(39318584-39318747)
chr8 (9-172)||(35684004-35684167)
chr8 (9-172)||(40105238-40105401)
chr8 (9-161)||(43098545-43098697)
chr8 (9-161)||(6347281-6347433)
chr8 (9-173)||(11076214-11076378)
chr8 (9-161)||(37098319-37098471)
chr8 (9-172)||(39260278-39260444)
chr8 (9-161)||(32337796-32337948)
chr8 (9-161)||(31701047-31701196)
chr8 (9-127)||(32947065-32947183)
chr8 (9-161)||(23144107-23144260)
chr8 (9-161)||(627360-627512)
chr8 (9-144)||(586428-586563)
chr8 (30-161)||(20091867-20091998)
chr8 (129-172)||(42131889-42131932)
chr8 (22-121)||(28284449-28284548)
chr8 (111-161)||(13546259-13546309)
chr8 (111-161)||(13678164-13678214)
chr8 (9-61)||(42131968-42132020)
chr8 (16-98)||(11457018-11457100)
[»] chr5 (26 HSPs)
chr5 (9-172)||(8734680-8734842)
chr5 (9-172)||(27114290-27114453)
chr5 (9-169)||(37012810-37012970)
chr5 (9-173)||(13822057-13822224)
chr5 (9-172)||(8197394-8197560)
chr5 (9-172)||(12785140-12785306)
chr5 (9-161)||(37030261-37030413)
chr5 (9-169)||(18808967-18809130)
chr5 (9-172)||(12723657-12723823)
chr5 (9-172)||(3556607-3556770)
chr5 (9-161)||(26279020-26279172)
chr5 (9-161)||(37883410-37883562)
chr5 (9-172)||(38679438-38679604)
chr5 (9-161)||(25977135-25977283)
chr5 (9-146)||(9715327-9715464)
chr5 (9-161)||(11719938-11720091)
chr5 (9-170)||(16513581-16513744)
chr5 (9-85)||(15858804-15858880)
chr5 (70-172)||(8299208-8299313)
chr5 (9-123)||(27495147-27495261)
chr5 (10-107)||(23252461-23252558)
chr5 (9-73)||(2606076-2606140)
chr5 (9-67)||(8300864-8300922)
chr5 (10-112)||(27690482-27690584)
chr5 (9-86)||(22911851-22911928)
chr5 (9-101)||(41616070-41616160)
[»] chr6 (10 HSPs)
chr6 (9-172)||(31722857-31723023)
chr6 (9-160)||(31318520-31318671)
chr6 (9-170)||(31271335-31271496)
chr6 (9-172)||(9304942-9305105)
chr6 (9-169)||(439017-439180)
chr6 (9-172)||(16395301-16395467)
chr6 (9-170)||(303740-303904)
chr6 (9-144)||(20818518-20818653)
chr6 (9-112)||(17519839-17519942)
chr6 (10-112)||(6837248-6837350)
[»] scaffold1301 (1 HSPs)
scaffold1301 (9-172)||(1641-1804)
[»] scaffold0054 (1 HSPs)
scaffold0054 (9-116)||(19067-19174)
[»] scaffold0160 (1 HSPs)
scaffold0160 (4-100)||(17301-17397)
[»] scaffold0048 (1 HSPs)
scaffold0048 (9-100)||(51827-51916)
[»] scaffold0210 (1 HSPs)
scaffold0210 (4-112)||(8159-8267)
[»] scaffold0001 (1 HSPs)
scaffold0001 (18-124)||(427220-427326)


Alignment Details
Target: chr2 (Bit Score: 148; Significance: 4e-78; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 9 - 172
Target Start/End: Original strand, 44760078 - 44760241
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  44760078 gaagaaaatgtaagaaaagaggtgatgtgaataatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctaggtcattaatacag 44760177  T
Q  109 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctctgaatctttccg 172  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  44760178 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccacattaatggctctgaatctttccg 44760241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 9 - 171
Target Start/End: Original strand, 6404101 - 6404263
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||| |||||||||| |    
T  6404101 gaagaaaatgtaagaaaagaggtgatgtgaagaatgaaggtatttgttgaagatggaagcctatttatagcctaaaacaagtcctaggtcattaatacgg 6404200  T
Q  109 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctctgaatctttcc 171  Q
    |||| ||||||||||||||||||||||||||||||||||  |||||||||||| |||||||||    
T  6404201 tcaacgaaaacgtgttagtggttgtaaccgtccaaacccgcattaatggctctaaatctttcc 6404263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 9 - 172
Target Start/End: Original strand, 15911761 - 15911927
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||||||||||| |||||| ||||||||| ||||||| | |||||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  15911761 gaagaaaatgtaagaaaagaggtgaagtgaagaatcaaggtatttgttgaagatggaagcctatttatagcctaaaacaagtcctaggtcattaatacag 15911860  T
Q  109 tcaatgaaaacgtgttagtg---gttgtaaccgtccaaacccatattaatggctctgaatctttccg 172  Q
    |||||||||| |||||||||   |||||||||||||||||||| |||||||||||||||||||||||    
T  15911861 tcaatgaaaatgtgttagtggttgttgtaaccgtccaaacccacattaatggctctgaatctttccg 15911927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 9 - 161
Target Start/End: Original strand, 13278679 - 13278831
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||| ||||||| |||||| ||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||   ||||||||||||    
T  13278679 gaagaaaatggaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatggaagcctatttatagcctaaaacaagtcctttgtcattaatacag 13278778  T
Q  109 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctct 161  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  13278779 tcaatgaaaacgtgttagtggttgtaaccgtccaaccccacattaatggctct 13278831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 9 - 172
Target Start/End: Original strand, 17308943 - 17309108
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||||||||||| |||||| ||||||||||||||||| | | |||||||||||| ||||||||||| |||||||||| ||| ||||||||||||    
T  17308943 gaagaaaatgtaagaaaagaggtgaagtgaagaatgaaggtatttgt-gaagatggaagcctatttatagccgaaaacaagtcataggtcattaatacag 17309041  T
Q  109 tcaatgaaaacgtgttagtg---gttgtaaccgtccaaacccatattaatggctctgaatctttccg 172  Q
    ||||||||||||||||||||   |||||||||||||||||||| |||||||||||||||||||||||    
T  17309042 tcaatgaaaacgtgttagtggttgttgtaaccgtccaaacccacattaatggctctgaatctttccg 17309108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 9 - 172
Target Start/End: Complemental strand, 38703738 - 38703573
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||||||||||| |||||| ||||||||| ||||||| | ||||||||||||||  ||||||||||||||| ||||||||| ||||||||||||    
T  38703738 gaagaaaatgtaagaaaagaggtgaagtgaagaataaaggtatttgttgaagatggaagcc-atttatagcctaaaagaagtcctaggtcattaatacag 38703640  T
Q  109 tcaatgaaaacgtgttagtgg---ttgtaaccgtccaaacccatattaatggctctgaatctttccg 172  Q
    |||||||||||||||||||||   ||||||||||||||||||| ||||||| |||||||||||||||    
T  38703639 tcaatgaaaacgtgttagtggttgttgtaaccgtccaaacccacattaatgactctgaatctttccg 38703573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 13 - 170
Target Start/End: Complemental strand, 30490828 - 30490668
Alignment:
Q  13 aaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacagtcaa 112  Q
    |||||||||||||| || ||| |||||||||| |||||| | ||||||||| |||| ||||||| |||||||||||||||||| ||||||||||||||||    
T  30490828 aaaatgtaagaaaagagctgaggtgaagaatgtaggtatttgttgaagatgaaagcctatttatggcctaaaacaagtcctaggtcattaatacagtcaa 30490729  T
Q  113 tgaaaacgtgttagtgg---ttgtaaccgtccaaacccatattaatggctctgaatctttc 170  Q
    |||||||||||||||||   ||||||||||||||||||| |||||||||||||||||||||    
T  30490728 tgaaaacgtgttagtggttgttgtaaccgtccaaacccacattaatggctctgaatctttc 30490668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 9 - 172
Target Start/End: Complemental strand, 17137861 - 17137691
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagc----ttatttatagcctaaaacaagtcctagatcattaat 104  Q
    |||||||||| ||||||| |||||| ||||||||||||||||| | |||||||| |||||    ||||||||||||||||||||||||||| ||||||||    
T  17137861 gaagaaaatggaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatagaagcctgtttatttatagcctaaaacaagtcctaggtcattaat 17137762  T
Q  105 acagtcaatgaaaacgtgttagtgg---ttgtaaccgtccaaacccatattaatggctctgaatctttccg 172  Q
    |||||||||||||||||||||||||   ||||||||||||||||||| |||||||||||| ||| ||||||    
T  17137761 acagtcaatgaaaacgtgttagtggttgttgtaaccgtccaaacccacattaatggctctaaatgtttccg 17137691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 9 - 161
Target Start/End: Complemental strand, 31994229 - 31994077
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||| ||||||| |||||| |||| |||||||| ||| | ||||| |||||| | |||||||||||||||||||||||||| |||||| |||||    
T  31994229 gaagaaaatggaagaaaagaggtgaagtgatgaatgaagatatttgttgaatatggaaacctatttatagcctaaaacaagtcctaggtcattactacag 31994130  T
Q  109 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctct 161  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  31994129 tcaatgaaaacgtgttagtggttgtaaccgtccaaacctacattaatggctct 31994077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 9 - 161
Target Start/End: Complemental strand, 1210083 - 1209930
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||| ||||||| | |||| |||||||||| |||||| | | |||||||||||| |||||||||| ||||||||||||||| ||||||||| ||    
T  1210083 gaagaaaatggaagaaaagatgtgaagtgaagaatgcaggtatttgtcgaagatggaagcctatttatagcttaaaacaagtcctaggtcattaataaag 1209984  T
Q  109 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccata-ttaatggctct 161  Q
    |||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  1209983 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccacatttaatggctct 1209930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 9 - 170
Target Start/End: Original strand, 45117056 - 45117224
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaag-------atggaagcttatttatagcctaaaacaagtcctagatcatt 101  Q
    |||||||||| ||||||| |||||| |||||||||||| |||| | ||||||       |||||||| |||||||||||||||||||||| ||| |||||    
T  45117056 gaagaaaatggaagaaaagaggtgaagtgaagaatgaaagtatttgttgaagatggaagatggaagcctatttatagcctaaaacaagtcttaggtcatt 45117155  T
Q  102 aatacagtcaatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctctgaatctttc 170  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||    
T  45117156 aatagagtcaatgaaaacgtgttagtggttgtaaccgtccaaatccacattaacggctctgaatctttc 45117224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 9 - 161
Target Start/End: Complemental strand, 7942894 - 7942742
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||| ||||||| |||||| ||||| ||||||||||| | |||||||||||||  | |||||||| ||||||||||||||| || ||| |||||    
T  7942894 gaagaaaatggaagaaaagaggtgaagtgaacaatgaaggtatttgttgaagatggaagtctgtttatagcataaaacaagtcctaggtccttactacag 7942795  T
Q  109 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctct 161  Q
    ||||||||||| |||||||||||||||||||||||||| | ||||||||||||    
T  7942794 tcaatgaaaacatgttagtggttgtaaccgtccaaacctacattaatggctct 7942742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 9 - 157
Target Start/End: Original strand, 18137574 - 18137722
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||| |||||||||| ||| ||||||||||||||||| | ||||||||  |||| |||||||||||||||| ||||||||| |||||| ||||     
T  18137574 gaagaaaatggaagaaaaaagatgaagtgaagaatgaaggtatttgttgaagataaaagcctatttatagcctaaaataagtcctaggtcattagtacaa 18137673  T
Q  109 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatgg 157  Q
    ||||||||||||||||||||||||||||||||| |||| | ||||||||    
T  18137674 tcaatgaaaacgtgttagtggttgtaaccgtcccaacctacattaatgg 18137722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 9 - 106
Target Start/End: Original strand, 38207470 - 38207567
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatac 106  Q
    |||||||||||||||||| |||||| ||||||||||||||||| | ||||||||| |||| |||||||||||||||||||||||||| ||||||||||    
T  38207470 gaagaaaatgtaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatgtaagcatatttatagcctaaaacaagtcctaggtcattaatac 38207567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 9 - 124
Target Start/End: Complemental strand, 21485410 - 21485295
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||||||||||| |||||| |||||||||||| | || | ||||| ||| ||||||||||||||||||||||||||||||| |||| | ||||     
T  21485410 gaagaaaatgtaagaaaagaggtgaagtgaagaatgaaagaatttgttgaatatgaaagcttatttatagcctaaaacaagtcctaggtcataagtacaa 21485311  T
Q  109 tcaatgaaaacgtgtt 124  Q
    ||||| ||||||||||    
T  21485310 tcaataaaaacgtgtt 21485295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 38 - 127
Target Start/End: Original strand, 1114722 - 1114811
Alignment:
Q  38 aagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacagtcaatgaaaacgtgttagt 127  Q
    |||||||||||||| | ||||||||| |||| |||||||||| ||||||||||||||| |||||| || ||||||||||||||| |||||    
T  1114722 aagaatgaaggtatttgttgaagatgaaagcctatttatagcttaaaacaagtcctaggtcattagtatagtcaatgaaaacgtattagt 1114811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 112
Target Start/End: Complemental strand, 37128049 - 37127941
Alignment:
Q  4 atgtcgaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaa 103  Q
    |||| |||||||| ||||||||| |||||| |||||||||||| | || | || || ||| |||||||||||||||||||||||||||||| || || ||    
T  37128049 atgttgaagaaaaagtaagaaaataggtgaagtgaagaatgaaagaatttgttaaaaatgcaagcttatttatagcctaaaacaagtcctatatgataaa 37127950  T
Q  104 tacagtcaa 112  Q
    |||||||||    
T  37127949 tacagtcaa 37127941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 10 - 112
Target Start/End: Original strand, 33945914 - 33946016
Alignment:
Q  10 aagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacagt 109  Q
    ||||||| |||||||||  ||||| |||||||||||||| || | ||||||||| || | ||| ||||||||||||||||||||||||||| | ||||||    
T  33945914 aagaaaaagtaagaaaagtggtgaagtgaagaatgaaggaatttgttgaagatgcaaacctatatatagcctaaaacaagtcctagatcataactacagt 33946013  T
Q  110 caa 112  Q
    |||    
T  33946014 caa 33946016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 102 - 171
Target Start/End: Original strand, 38208410 - 38208482
Alignment:
Q  102 aatacagtcaatgaaaacgtgttagtggttgt---aaccgtccaaacccatattaatggctctgaatctttcc 171  Q
    ||||| ||||||||||||||||||||||||||   ||||||||||||||| ||||||||||||||||||||||    
T  38208410 aatacggtcaatgaaaacgtgttagtggttgttgcaaccgtccaaacccacattaatggctctgaatctttcc 38208482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 112
Target Start/End: Complemental strand, 21649822 - 21649729
Alignment:
Q  19 taagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacagtcaa 112  Q
    ||||||||||||||| |||||||||||||  || |  ||||||||||||  |||||||||||| ||||||||||||||| || | |||||||||    
T  21649822 taagaaaaaaggtgaagtgaagaatgaagaaatttgatgaagatggaagactatttatagccttaaacaagtcctagattataactacagtcaa 21649729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 16739546 - 16739457
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcatt 101  Q
    |||||||||||||||||| ||||||   ||||||| |||| | || ||||||||  |||| | |||||||||||||||||||||||| |||||    
T  16739546 gaagaaaatgtaagaaaagaggtga---gaagaataaaggaaaatgttgaagatccaagcctttttatagcctaaaacaagtcctaggtcatt 16739457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 199 - 238
Target Start/End: Original strand, 44929408 - 44929447
Alignment:
Q  199 gaaagtcctaactggtcataagtatttggacacatcattt 238  Q
    |||||||||||||| ||| |||||||||||||||||||||    
T  44929408 gaaagtcctaactgatcacaagtatttggacacatcattt 44929447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 34906331 - 34906421
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcatt 101  Q
    |||||||||||||||||  |||||| |  ||||||||||| | || ||||||||  | || | ||||||||||| |||||||||||| |||||    
T  34906331 gaagaaaatgtaagaaaggaggtgaag--aagaatgaaggaaaatgttgaagattcatgcctttttatagcctagaacaagtcctaggtcatt 34906421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 34948478 - 34948568
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcatt 101  Q
    |||||||||||||||||  |||||| |  ||||||||||| | || || |||||  |||| | |||||||||||||||||||| ||| |||||    
T  34948478 gaagaaaatgtaagaaaggaggtgaag--aagaatgaaggaaaatgttaaagattcaagcctttttatagcctaaaacaagtcataggtcatt 34948568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 284
Target Start/End: Original strand, 44929727 - 44929759
Alignment:
Q  252 tctatatcaatttacttacaaaaagaaagcaat 284  Q
    |||| ||||||||||||||||||||||||||||    
T  44929727 tctaaatcaatttacttacaaaaagaaagcaat 44929759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 128; Significance: 3e-66; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 9 - 172
Target Start/End: Original strand, 35794464 - 35794627
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||||||||||| || ||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||| ||| ||||||||||||    
T  35794464 gaagaaaatgtaagaaaagagctgatgtgaagaatgaaggtatttgttgaagatggaagcctatttatagcctaaaacaagtcataggtcattaatacag 35794563  T
Q  109 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctctgaatctttccg 172  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  35794564 tcaatgaaaacgtgttagtggttgtaaccgtccaaatccatattaatggctctaaatctttccg 35794627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 9 - 170
Target Start/End: Original strand, 46254851 - 46255015
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||||||||||| |||||| ||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  46254851 gaagaaaatgtaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatggaagcctatttatagcctaaaacaagtcctaggtcattaatacag 46254950  T
Q  109 tcaatgaaaacgtgttagtg---gttgtaaccgtccaaacccatattaatggctctgaatctttc 170  Q
    ||||||||||||||||||||   |||||||||||||||||||| |||||||||||||||||||||    
T  46254951 tcaatgaaaacgtgttagtggttgttgtaaccgtccaaacccacattaatggctctgaatctttc 46255015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 9 - 170
Target Start/End: Complemental strand, 14816805 - 14816644
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||| | ||||||| |||||| ||||||||||||||||| | |||||||||||||| ||||||||| |||||||||||||||| ||||||||||||    
T  14816805 gaagaaaaaggaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatggaagcctatttataggctaaaacaagtcctaggtcattaatacag 14816706  T
Q  109 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctctgaatctttc 170  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  14816705 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccacattaatggctctggatctttc 14816644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 9 - 170
Target Start/End: Complemental strand, 15263801 - 15263640
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||| | ||||||| |||||| ||||||||||||||||| | |||||||||||||| ||||||||| |||||||||||||||| ||||||||||||    
T  15263801 gaagaaaaaggaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatggaagcctatttataggctaaaacaagtcctaggtcattaatacag 15263702  T
Q  109 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctctgaatctttc 170  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  15263701 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccacattaatggctctggatctttc 15263640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 9 - 172
Target Start/End: Complemental strand, 34848027 - 34847861
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||||||||||| |||||| ||||||||||||||||| | |||||||||||||| |||||||||| ||||||||||||||| ||||||||||||    
T  34848027 gaagaaaatgtaagaaaagaggtgaagtgaagaatgaaggtatctgttgaagatggaagcctatttatagcataaaacaagtcctaggtcattaatacag 34847928  T
Q  109 tcaatgaaaacgtgttagtgg---ttgtaaccgtccaaacccatattaatggctctgaatctttccg 172  Q
    |||||||||||||||||||||   ||||||| ||||||||||| |||||||||||||||||||||||    
T  34847927 tcaatgaaaacgtgttagtggttgttgtaactgtccaaacccacattaatggctctgaatctttccg 34847861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 9 - 173
Target Start/End: Original strand, 43458172 - 43458335
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||| ||||||| |||||| ||||||||||||||||| | ||||||||| | || |||||||||||||||||||||||||  ||||||||||||    
T  43458172 gaagaaaatggaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatgta-gcctatttatagcctaaaacaagtcctatgtcattaatacag 43458270  T
Q  109 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctctgaatctttccga 173  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  43458271 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccacattaatggctctgaatctttccga 43458335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 9 - 170
Target Start/End: Complemental strand, 25529258 - 25529097
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||| ||||||| |||||| ||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||| |||||||||||     
T  25529258 gaagaaaatggaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatggaagcctatttatagcctaaaacaagtcctaggtcattaatacaa 25529159  T
Q  109 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctctgaatctttc 170  Q
    |||||||| |||||| |||||||||||||||||||||||| ||||||| |||||||||||||    
T  25529158 tcaatgaatacgtgtcagtggttgtaaccgtccaaacccacattaatgactctgaatctttc 25529097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 9 - 172
Target Start/End: Original strand, 33950916 - 33951082
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||||||||||| |||| | ||||||||| ||||||| | |||||||| ||| |||||||||||||||||||||||||||| ||||||||||||    
T  33950916 gaagaaaatgtaagaaaagaggtaaagtgaagaataaaggtatttgttgaagatagaaacttatttatagcctaaaacaagtcctaggtcattaatacag 33951015  T
Q  109 tcaatgaaaacgtgttagtg---gttgtaaccgtccaaacccatattaatggctctgaatctttccg 172  Q
    ||||||||||||||||||||   ||||||||| |||||||||| ||||||||||||||||| |||||    
T  33951016 tcaatgaaaacgtgttagtggttgttgtaaccatccaaacccacattaatggctctgaatcgttccg 33951082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 9 - 172
Target Start/End: Complemental strand, 36312233 - 36312068
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||||||||||| |||||| ||||| ||||||| ||| | |||||||||||||  |||| |||||||||||||||| |||| ||||||||||||    
T  36312233 gaagaaaatgtaagaaaagaggtgaagtgaacaatgaagatatttgttgaagatggaagtctatt-atagcctaaaacaagttctaggtcattaatacag 36312135  T
Q  109 tcaatgaaaacgtgttagtgg---ttgtaaccgtccaaacccatattaatggctctgaatctttccg 172  Q
    ||||| |||||||||||||||   ||||||||||||||||||| |||||||||||||||||||||||    
T  36312134 tcaataaaaacgtgttagtggttgttgtaaccgtccaaacccacattaatggctctgaatctttccg 36312068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 7 - 107
Target Start/End: Complemental strand, 42321286 - 42321186
Alignment:
Q  7 tcgaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatac 106  Q
    |||||||||||| ||||||| |||||| ||||||||||||| ||| | |||||||||||||| |||||||| ||||||||||||| ||| | ||||||||    
T  42321286 tcgaagaaaatggaagaaaagaggtgaagtgaagaatgaagatatttgttgaagatggaagcctatttataacctaaaacaagtcataggttattaatac 42321187  T
Q  107 a 107  Q
    |    
T  42321186 a 42321186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 10 - 124
Target Start/End: Original strand, 1852136 - 1852250
Alignment:
Q  10 aagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacagt 109  Q
    ||||||||||||||||| |||||| ||||||||||||||  | | || |||||| |||||||| |||||||||||||||  ||||| |||| | |||| |    
T  1852136 aagaaaatgtaagaaaagaggtgaagtgaagaatgaaggactttgttcaagatgcaagcttatatatagcctaaaacaatacctaggtcataagtacaat 1852235  T
Q  110 caatgaaaacgtgtt 124  Q
    |||||||||||||||    
T  1852236 caatgaaaacgtgtt 1852250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 97
Target Start/End: Original strand, 44863002 - 44863090
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagat 97  Q
    |||||||||| ||||||| |||||| ||||||||||||||||| | || ||||| ||||| |||||||||| |||||||||||||||||    
T  44863002 gaagaaaatggaagaaaagaggtgaagtgaagaatgaaggtatttgttcaagattgaagcatatttatagcttaaaacaagtcctagat 44863090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 29 - 144
Target Start/End: Original strand, 1377355 - 1377470
Alignment:
Q  29 ggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacagtcaatgaaaacgtgttagtg 128  Q
    ||||| |||||||||||||  || | |||||||||||||| |||||||||||||||| ||||| ||  |||| | ||||||||||||||||||||| |||    
T  1377355 ggtgaagtgaagaatgaagaaatttgttgaagatggaagcctatttatagcctaaaataagtcatatgtcataagtacagtcaatgaaaacgtgtttgtg 1377454  T
Q  129 gttgtaaccgtccaaa 144  Q
    ||  ||||| ||||||    
T  1377455 gtgctaaccatccaaa 1377470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 112
Target Start/End: Complemental strand, 31326777 - 31326669
Alignment:
Q  4 atgtcgaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaa 103  Q
    |||| |||||||| ||||||||| |||||| |||||||||||||  || | ||||||||| || | |||||||||  |||||||||||||| ||||| |     
T  31326777 atgttgaagaaaaagtaagaaaagaggtgaagtgaagaatgaagaaatttgttgaagatgcaaacctatttatagtataaaacaagtcctaaatcataat 31326678  T
Q  104 tacagtcaa 112  Q
    |||||||||    
T  31326677 tacagtcaa 31326669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 13 - 124
Target Start/End: Original strand, 19646935 - 19647046
Alignment:
Q  13 aaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacagtcaa 112  Q
    |||||||||||||| |||||| || ||||||||||| |  | ||||||||  |||| ||||||||| || |||| ||||||||||||| | |||||||||    
T  19646935 aaaatgtaagaaaagaggtgaagtaaagaatgaaggaaattgttgaagattcaagcatatttatagtcttaaaccagtcctagatcataattacagtcaa 19647034  T
Q  113 tgaaaacgtgtt 124  Q
      ||||||||||    
T  19647035 gtaaaacgtgtt 19647046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 127
Target Start/End: Complemental strand, 26188323 - 26188205
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||| ||| |||||||||| |||||||||||||| || | ||||| ||| | || |||||||| ||||||||| ||||||| |||| | ||||     
T  26188323 gaagaaaatgaaagtaaaaaggtgaagtgaagaatgaaggaatttgttgaacatgcatgcctatttataacctaaaacatgtcctaggtcataagtacaa 26188224  T
Q  109 tcaatgaaaacgtgttagt 127  Q
    ||||  ||||| |||||||    
T  26188223 tcaagcaaaacatgttagt 26188205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 129 - 172
Target Start/End: Original strand, 44866155 - 44866198
Alignment:
Q  129 gttgtaaccgtccaaacccatattaatggctctgaatctttccg 172  Q
    |||||||||||||||||||| | |||||||||||||||||||||    
T  44866155 gttgtaaccgtccaaacccacaataatggctctgaatctttccg 44866198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 112
Target Start/End: Complemental strand, 1906679 - 1906577
Alignment:
Q  10 aagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacagt 109  Q
    ||||||| ||||||||| |||||| |||||||||| ||| |  | ||||||||  |||| ||||||||| || ||||| |||||||||||  | ||||||    
T  1906679 aagaaaaagtaagaaaagaggtgaagtgaagaatgcaggaacttgttgaagattcaagcctatttatagtcttaaacatgtcctagatcacaactacagt 1906580  T
Q  110 caa 112  Q
    |||    
T  1906579 caa 1906577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 100
Target Start/End: Complemental strand, 3601129 - 3601033
Alignment:
Q  4 atgtcgaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcat 100  Q
    |||| |||||||  ||||||||| || ||| |||||||| ||||  || | ||||||||| |||  ||||||||||||||||||| |||| ||||||    
T  3601129 atgttgaagaaatagtaagaaaagagttgaagtgaagaacgaagaaatttgttgaagatgcaagtctatttatagcctaaaacaaatccttgatcat 3601033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 91
Target Start/End: Complemental strand, 35585174 - 35585120
Alignment:
Q  37 gaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtc 91  Q
    |||||||||||| | || ||||||||  |||||| ||||||||||||||||||||    
T  35585174 gaagaatgaaggaaaatgttgaagatccaagcttttttatagcctaaaacaagtc 35585120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 9 - 172
Target Start/End: Original strand, 47646902 - 47647068
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||||||||||| |||||| ||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  47646902 gaagaaaatgtaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatggaagcctatttatagcctaaaacaagtcctaggtcattaatacag 47647001  T
Q  109 tcaatgaaaacgtgttagtg---gttgtaaccgtccaaacccatattaatggctctgaatctttccg 172  Q
    ||||||||||||||||||||   |||||||||||||||||||| |||||||||||||||||||||||    
T  47647002 tcaatgaaaacgtgttagtggttgttgtaaccgtccaaacccacattaatggctctgaatctttccg 47647068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 9 - 169
Target Start/End: Complemental strand, 47013867 - 47013707
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||||||||||| |||||| ||||||||||||||||| | |||||||||||| | |||||||||||||||||||||||||| |||||||||| |    
T  47013867 gaagaaaatgtaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatggaaacctatttatagcctaaaacaagtcctaggtcattaatacgg 47013768  T
Q  109 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctctgaatcttt 169  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  47013767 tcaatgaaaacgtgttagtggttgtaaccatccaaacccacattaatggctctgaatcttt 47013707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 9 - 161
Target Start/End: Original strand, 6936453 - 6936605
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||| |||||||||||||| |||||||||||| |||| | |||||||||||||| |||||||||||||||||||||||||  ||||||||||||    
T  6936453 gaagaaaatgaaagaaaaaaggtgaagtgaagaatgaatgtatttgttgaagatggaagcctatttatagcctaaaacaagtcctaagtcattaatacag 6936552  T
Q  109 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctct 161  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  6936553 tcaatgaaaacgtgttagtggttgtaaccgcccaaacccatattaatggctct 6936605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 9 - 172
Target Start/End: Complemental strand, 10509373 - 10509207
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||||||||||| |||||| ||||||||||||||||| | |||||||| ||||| |||||||||||||||| ||||||||| ||||||||||||    
T  10509373 gaagaaaatgtaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatagaagcctatttatagcctaaaagaagtcctaggtcattaatacag 10509274  T
Q  109 tcaatgaaaacgtgttagtgg---ttgtaaccgtccaaacccatattaatggctctgaatctttccg 172  Q
    |||||||||||||||||||||   ||||||||||||||||||| |||||||||||||||||||||||    
T  10509273 tcaatgaaaacgtgttagtggttgttgtaaccgtccaaacccacattaatggctctgaatctttccg 10509207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 9 - 172
Target Start/End: Complemental strand, 36402862 - 36402696
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||||||||||| |||||| ||||||||||||||||| | |||||||||||||| |||||||| ||||||||||||||||| ||||||||||||    
T  36402862 gaagaaaatgtaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatggaagcctatttataacctaaaacaagtcctaggtcattaatacag 36402763  T
Q  109 tcaatgaaaacgtgttagtgg---ttgtaaccgtccaaacccatattaatggctctgaatctttccg 172  Q
    |||||||||||||||||||||   ||||||||||||||||||| ||||||| |||||||||||||||    
T  36402762 tcaatgaaaacgtgttagtggttgttgtaaccgtccaaacccacattaatgactctgaatctttccg 36402696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 9 - 161
Target Start/End: Original strand, 32529785 - 32529937
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||| | ||||||| |||||| ||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  32529785 gaagaaaagggaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatggaagcctatttatagcctaaaacaagtcctaggtcattaatacag 32529884  T
Q  109 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctct 161  Q
    | |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  32529885 ttaatgaaaacgtgttagtggttgtaaccgtccaaacccacattaatggctct 32529937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 9 - 172
Target Start/End: Original strand, 149312 - 149475
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||| ||||||| |||||| |||||||||| | |||| | |||||||||||||| |||||||||||||||||||||| ||| ||||||||||||    
T  149312 gaagaaaatggaagaaaagaggtgaagtgaagaatgtaagtatttgttgaagatggaagcctatttatagcctaaaacaagtcataggtcattaatacag 149411  T
Q  109 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctctgaatctttccg 172  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||||||    
T  149412 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccacgttaatgactctgaatctttccg 149475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 9 - 164
Target Start/End: Original strand, 227615 - 227770
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||| ||||||| |||||| ||||||||||||||||| | || ||||||||||  |||||||||||||||||||||||||| ||||||||||||    
T  227615 gaagaaaatggaagaaaagaggtgaagtgaagaatgaaggtatttgttaaagatggaagtctatttatagcctaaaacaagtcctaggtcattaatacag 227714  T
Q  109 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctctgaa 164  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  227715 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccacatcaatggctctgaa 227770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 9 - 172
Target Start/End: Complemental strand, 26502343 - 26502177
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||| ||||||| |||||| |||||||||| |||||| | |||||||||||||| ||||||||| |||||||||||||||| ||||||||||||    
T  26502343 gaagaaaatgcaagaaaagaggtgaagtgaagaatgtaggtatttgttgaagatggaagcctatttatagtctaaaacaagtcctaggtcattaatacag 26502244  T
Q  109 tcaatgaaaacgtgttagtgg---ttgtaaccgtccaaacccatattaatggctctgaatctttccg 172  Q
    |||||||||||||||||||||   ||||||| ||||||||||| |||||||||||||||||||||||    
T  26502243 tcaatgaaaacgtgttagtggttgttgtaactgtccaaacccacattaatggctctgaatctttccg 26502177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 9 - 173
Target Start/End: Original strand, 40937203 - 40937367
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||  ||||||| |||||| ||||| |||||| |||| | |||||||||||||| ||||||||||||||||||| |||||| ||||||||||||    
T  40937203 gaagaaaatagaagaaaagaggtgaagtgaaaaatgaaagtatttgttgaagatggaagcctatttatagcctaaaacaaatcctaggtcattaatacag 40937302  T
Q  109 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctctgaatctttccga 173  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||    
T  40937303 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccacattaaagactctgaatctttccga 40937367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 10 - 161
Target Start/End: Complemental strand, 41193868 - 41193717
Alignment:
Q  10 aagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacagt 109  Q
    ||||||||| ||||||| |||||| ||| ||||||||||||| | |||||||||||||| |||||||||||||||||||||||||| |||||| ||||||    
T  41193868 aagaaaatggaagaaaagaggtgaagtggagaatgaaggtatttgttgaagatggaagcatatttatagcctaaaacaagtcctaggtcattactacagt 41193769  T
Q  110 caatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctct 161  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  41193768 caatgaaaacgtgttagtggttgtaaccgtccaaacccacattaatagctct 41193717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 9 - 161
Target Start/End: Original strand, 39353283 - 39353435
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||| ||||||| ||| || |||||||||||| |||| | |||||||||||||| ||||||||||||||||||| |||||| ||||||||||||    
T  39353283 gaagaaaatggaagaaaagaggcgaagtgaagaatgaatgtatctgttgaagatggaagcctatttatagcctaaaacaaatcctaggtcattaatacag 39353382  T
Q  109 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctct 161  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  39353383 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccacattaatgactct 39353435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 13 - 172
Target Start/End: Original strand, 39586563 - 39586722
Alignment:
Q  13 aaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacagtcaa 112  Q
    |||||||||||||| ||||||  ||||||||||| |||| | ||||| |||||||| |||||||||| |||||||| |||||| ||||||||||||||||    
T  39586563 aaaatgtaagaaaataggtgaattgaagaatgaaagtatttgttgaaaatggaagcctatttatagcttaaaacaaatcctaggtcattaatacagtcaa 39586662  T
Q  113 tgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctctgaatctttccg 172  Q
    ||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||||    
T  39586663 tgaaaccgtgttagtggttgtaaccatccaaacccacattaatggctctgaatctttccg 39586722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 13 - 161
Target Start/End: Complemental strand, 49166257 - 49166110
Alignment:
Q  13 aaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacagtcaa 112  Q
    |||||| ||||||| | |||| ||||||||||||||||| | | |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  49166257 aaaatggaagaaaagatgtgaagtgaagaatgaaggtatttgt-gaagatggaagcctatttatagcctaaaacaagtcctagatcattactacagtcaa 49166159  T
Q  113 tgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctct 161  Q
    ||||||| ||||||||||||||||||||| |||| | ||||||| ||||    
T  49166158 tgaaaacatgttagtggttgtaaccgtcctaacctacattaatgactct 49166110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 9 - 156
Target Start/End: Complemental strand, 31765354 - 31765207
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||| ||| |||||| ||||||| ||||||||||||||||| | |||||||||||||| |||||||| ||||||||||||||||| |||||| | |||    
T  31765354 gaagaagatggaagaaagaaggtgaagtgaagaatgaaggtatttgttgaagatggaagcctatttataacctaaaacaagtcctaggtcattagtgcag 31765255  T
Q  109 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatg 156  Q
    ||||| ||||||||||||||||||||||||| |||||| | |||||||    
T  31765254 tcaataaaaacgtgttagtggttgtaaccgttcaaacctacattaatg 31765207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 41174795 - 41174913
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||||||||||| | |||| ||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||  ||||||||||||    
T  41174795 gaagaaaatgtaagaaaagatgtgaagtgaagaatgaaggtatttgttgaagatggaagcctatttatagcctaaaacaagtcctatgtcattaatacag 41174894  T
Q  109 tcaatgaaaacgtgttagt 127  Q
    |||||||||||||||||||    
T  41174895 tcaatgaaaacgtgttagt 41174913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 144
Target Start/End: Original strand, 33843502 - 33843637
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    ||||||||||||| |||| |||||| |||||||||||||| || | |||||||||||| | ||||||||||||||||||||||||||||||| |  ||||    
T  33843502 gaagaaaatgtaaaaaaagaggtgaagtgaagaatgaaggaatttgttgaagatggaaacctatttatagcctaaaacaagtcctagatcataaccacag 33843601  T
Q  109 tcaatgaaaacgtgttagtggttgtaaccgtccaaa 144  Q
    ||||  |||||||||| |||||  |||| |||||||    
T  33843602 tcaaataaaacgtgtttgtggtgctaactgtccaaa 33843637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 4 - 100
Target Start/End: Original strand, 42899198 - 42899294
Alignment:
Q  4 atgtcgaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcat 100  Q
    |||| ||||||||||||||||||||||||| |||||||||||||| || | ||||| ||| |||| |||||||||||||||||||||| || |||||    
T  42899198 atgttgaagaaaatgtaagaaaaaaggtgaagtgaagaatgaaggaatttgttgaaaatgcaagcctatttatagcctaaaacaagtcatatatcat 42899294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 10 - 100
Target Start/End: Complemental strand, 51329079 - 51328989
Alignment:
Q  10 aagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcat 100  Q
    |||||||||||| |||| |||||| |||||||||||||| || | ||||| ||| |||| |||||||||||||||||||||||||| ||||    
T  51329079 aagaaaatgtaataaaagaggtgaagtgaagaatgaaggaatttgttgaacatgcaagcctatttatagcctaaaacaagtcctagttcat 51328989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 100
Target Start/End: Complemental strand, 25214685 - 25214595
Alignment:
Q  10 aagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcat 100  Q
    ||||||| |||||||||  |||||  ||||||||||||| || | || |||||| |||  |||||||||||||||||||||||||||||||    
T  25214685 aagaaaaagtaagaaaagtggtgaattgaagaatgaaggaatttgttaaagatgtaagtctatttatagcctaaaacaagtcctagatcat 25214595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 91
Target Start/End: Original strand, 53393931 - 53394013
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtc 91  Q
    |||||||||| ||||||| || | | |||||||||||||| || | ||||| ||| |||| ||||||||||||||||||||||    
T  53393931 gaagaaaatgaaagaaaagagataaagtgaagaatgaaggaatttgttgaacatgcaagcctatttatagcctaaaacaagtc 53394013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 78
Target Start/End: Complemental strand, 10494869 - 10494800
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatag 78  Q
    ||||||||||||||||||||||||| |||||||||||||| |  | ||||||||  |||| |||||||||    
T  10494869 gaagaaaatgtaagaaaaaaggtgaagtgaagaatgaaggaaattgttgaagatctaagcatatttatag 10494800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 129 - 172
Target Start/End: Original strand, 41182006 - 41182049
Alignment:
Q  129 gttgtaaccgtccaaacccatattaatggctctgaatctttccg 172  Q
    ||||||||| |||||||||| |||||||||||||||||||||||    
T  41182006 gttgtaaccatccaaacccacattaatggctctgaatctttccg 41182049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 97
Target Start/End: Complemental strand, 44207701 - 44207641
Alignment:
Q  37 gaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagat 97  Q
    |||||||||||| | || ||||||||  |||||| |||||||||||||||||||| |||||    
T  44207701 gaagaatgaaggaaaatgttgaagatccaagcttttttatagcctaaaacaagtcatagat 44207641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 124
Target Start/End: Complemental strand, 21980013 - 21979926
Alignment:
Q  37 gaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacagtcaatgaaaacgtgtt 124  Q
    |||||||||||| | |||||||||||  |||||| |||||||||| ||| ||||| ||| || | | |||||||||  ||||||||||    
T  21980013 gaagaatgaaggaaaatcttgaagatccaagcttttttatagccttaaataagtcataggtcttaattacagtcaaataaaacgtgtt 21979926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 124
Target Start/End: Complemental strand, 22002444 - 22002357
Alignment:
Q  37 gaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacagtcaatgaaaacgtgtt 124  Q
    |||||||||||| | |||||||||||  |||||| |||||||||| ||| ||||| ||| || | | |||||||||  ||||||||||    
T  22002444 gaagaatgaaggaaaatcttgaagatccaagcttttttatagccttaaataagtcataggtcttaattacagtcaaataaaacgtgtt 22002357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 12717632 - 12717676
Alignment:
Q  4 atgtcgaagaaaatgtaagaaaaaaggtgatgtgaagaatgaagg 48  Q
    |||| |||| ||||||||||||| |||||| ||||||||||||||    
T  12717632 atgttgaagtaaatgtaagaaaagaggtgaagtgaagaatgaagg 12717676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 124; Significance: 8e-64; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 9 - 172
Target Start/End: Original strand, 40728012 - 40728175
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||||||||||| |||||||||||||||||||||||| | ||||||||| |||| |||||||||||||||||||||||||| ||||||||||||    
T  40728012 gaagaaaatgtaagaaaagaggtgatgtgaagaatgaaggtatttgttgaagatgaaagcctatttatagcctaaaacaagtcctaggtcattaatacag 40728111  T
Q  109 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctctgaatctttccg 172  Q
    ||||||||||||||||||||||||||||| |||| ||||| |||||||||| ||||||||||||    
T  40728112 tcaatgaaaacgtgttagtggttgtaaccatccatacccacattaatggctatgaatctttccg 40728175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 9 - 172
Target Start/End: Original strand, 45229056 - 45229219
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||||||||||| |||||||||||||||||||  ||| | |||||||||||| | |||||||||||||||||||||||||| ||||||||||||    
T  45229056 gaagaaaatgtaagaaaagaggtgatgtgaagaatgaatatatttgttgaagatggaatcctatttatagcctaaaacaagtcctaggtcattaatacag 45229155  T
Q  109 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctctgaatctttccg 172  Q
    || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  45229156 tccatgaaaacgtgttagtggttgtaaccgtccaaacccacattaatggctctgaatctttccg 45229219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 9 - 171
Target Start/End: Complemental strand, 28780927 - 28780765
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||| ||  ||||||||||||    
T  28780927 gaagaaaatgtaagaaaagaggtgatgtgaagaatgaaggtatttgttgaagatggaagcctatttatagcctaaaacaagtcatatgtcattaatacag 28780828  T
Q  109 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctctgaatctttcc 171  Q
    |||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||    
T  28780827 tcaatgaaaacgtgttagtggttgtaaccgcccaaaaccacattaatggctctgaatctttcc 28780765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 9 - 172
Target Start/End: Original strand, 35158705 - 35158868
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||| ||||||| |||||| ||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  35158705 gaagaaaatggaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatggaagcctatttatagcctaaaacaagtcctaggtcattaatacag 35158804  T
Q  109 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctctgaatctttccg 172  Q
    | ||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||||    
T  35158805 taaatgaaaacgtgttagtggttctaaccgtccaaacccacaataatggctctgaatctttccg 35158868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 9 - 170
Target Start/End: Original strand, 33281072 - 33281233
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||| ||||||| |||||| ||||||||||||||||| | ||||||||| |||| |||||||||||||||||||||| ||| |||||||||||     
T  33281072 gaagaaaatggaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatgtaagcctatttatagcctaaaacaagtcttaggtcattaatacaa 33281171  T
Q  109 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctctgaatctttc 170  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  33281172 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccacattaatggctctgaatctttc 33281233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 9 - 172
Target Start/End: Complemental strand, 52417085 - 52416919
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||||||||||| |||||| ||||||||||| ||||| | |||||||||||||| |||||||||||||||||||||| ||| ||||||||||||    
T  52417085 gaagaaaatgtaagaaaagaggtgaagtgaagaatgagggtatttgttgaagatggaagcctatttatagcctaaaacaagtcttaggtcattaatacag 52416986  T
Q  109 tcaatgaaaacgtgttagtgg---ttgtaaccgtccaaacccatattaatggctctgaatctttccg 172  Q
    |||||||||||||||||||||   ||||||||||||||||||| |||||||||||||||||||||||    
T  52416985 tcaatgaaaacgtgttagtggttgttgtaaccgtccaaacccacattaatggctctgaatctttccg 52416919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 9 - 172
Target Start/End: Original strand, 16023859 - 16024022
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||||||||||| |||||| ||||||||||||||||| | ||||| |||||||| |||||||||||||||||||||| ||| | ||||||||||    
T  16023859 gaagaaaatgtaagaaaagaggtgaagtgaagaatgaaggtatttgttgaatatggaagcctatttatagcctaaaacaagtcataggttattaatacag 16023958  T
Q  109 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctctgaatctttccg 172  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||    
T  16023959 tcaatgaaaacgtgttagtggttgcaaccgtccaaacccacattaatgactctgaatctttccg 16024022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 9 - 172
Target Start/End: Original strand, 31093092 - 31093255
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||| ||||||| |||||| ||||||||||||||||| | |||||||||||||| |||||||||||||||||||||| ||| ||||||||||||    
T  31093092 gaagaaaatggaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatggaagcctatttatagcctaaaacaagtcataggtcattaatacag 31093191  T
Q  109 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctctgaatctttccg 172  Q
    ||||||| | |||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  31093192 tcaatgagatcgtgttagtggttgtaaccgtccaaacccacaataatggctctgaatctttccg 31093255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 9 - 172
Target Start/End: Original strand, 1602770 - 1602932
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||| ||||||| |||||| ||||||||||||||||| | ||||||||| |||| |||||||||||||||||||||||||| ||||||||||||    
T  1602770 gaagaaaatggaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatgaaagcctatttatagcctaaaacaagtcctaggtcattaatacag 1602869  T
Q  109 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctctgaatctttccg 172  Q
    ||||| |||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||    
T  1602870 tcaat-aaaacgtgttagtggttgtaaccgtccaaatccacattaatgactctgaatctttccg 1602932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 9 - 172
Target Start/End: Original strand, 45462237 - 45462400
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||| ||||||| |||||| ||||||||||||| ||| | ||||||||| |||  |||||||||||||||||||||| ||||||||||||||||    
T  45462237 gaagaaaatggaagaaaataggtgaagtgaagaatgaagatatttgttgaagatgaaagtctatttatagcctaaaacaagtcatagatcattaatacag 45462336  T
Q  109 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctctgaatctttccg 172  Q
    ||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||    
T  45462337 tcaatgaaaacgtgtcagtggttgtaaccgtccaaacccacaataatggctctgaatctttccg 45462400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 9 - 161
Target Start/End: Complemental strand, 2013885 - 2013733
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||| ||||||| |||||| ||||||||||||||||| | ||||||||||||||  ||||||||||||||||||||||||| ||||||||||||    
T  2013885 gaagaaaatggaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatggaagccaatttatagcctaaaacaagtcctaggtcattaatacag 2013786  T
Q  109 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctct 161  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||| ||||    
T  2013785 tcaatgaaaacgtgttagtggttgtaaccgtccaaatccacattaatgactct 2013733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 9 - 161
Target Start/End: Complemental strand, 4190026 - 4189874
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||| ||||||| |||||| ||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||| ||||||||| ||    
T  4190026 gaagaaaatggaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatggaagcctatttatagcctaaaacaagtcctaggtcattaatatag 4189927  T
Q  109 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctct 161  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||||| ||||    
T  4189926 tcaataaaaacgtgttagtggttgtaaccgtccaaacccacattaatgactct 4189874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 9 - 161
Target Start/End: Complemental strand, 38551422 - 38551270
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||| ||||||| | |||| ||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||| |||||| |||||    
T  38551422 gaagaaaatggaagaaaagatgtgaagtgaagaatgaaggtatttgttgaagatggaagcctatttatagcctaaaacaagtcctaggtcattagtacag 38551323  T
Q  109 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctct 161  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  38551322 tcaatgaaaacgtgttagtggttgtaaccgtccaaacctacattaatggctct 38551270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 9 - 172
Target Start/End: Original strand, 49374304 - 49374466
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||| ||||||| |||||| |||||||||| |||| | | |||||||||||||| |||||||||||||||||||||| ||| |||||| |||||    
T  49374304 gaagaaaatggaagaaaagaggtgaagtgaagaatggaggtttttgttgaagatggaagcctatttatagcctaaaacaagtcataggtcatta-tacag 49374402  T
Q  109 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctctgaatctttccg 172  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  49374403 tcaatgaaaacgtgttagtggttgtaactgtccaaacccacattaatggctctgaatctttccg 49374466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 9 - 172
Target Start/End: Original strand, 30003597 - 30003762
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaa--aacaagtcctagatcattaatac 106  Q
    |||||||||| ||||||| |||||| ||||||||||||||||| | |||||||||||||| ||||||||||||||  |||||||||||| ||||||||||    
T  30003597 gaagaaaatggaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatggaagcctatttatagcctaataaacaagtcctaggtcattaatac 30003696  T
Q  107 agtcaatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctctgaatctttccg 172  Q
    ||||||||||||||||||| || ||||||||||||||||||| | ||||| |||||||||||||||    
T  30003697 agtcaatgaaaacgtgttattgcttgtaaccgtccaaacccacaataatgactctgaatctttccg 30003762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 9 - 161
Target Start/End: Original strand, 4048119 - 4048271
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||| ||||||| |||||| ||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||| | |||||||||     
T  4048119 gaagaaaatggaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatggaagcctatttatagcctaaaacaagtcctaggttattaatacaa 4048218  T
Q  109 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctct 161  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||| ||||    
T  4048219 tcaatgaaaacgtgttagtggttgtaaccgtccaaacctacattaatgactct 4048271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 13 - 172
Target Start/End: Original strand, 51538635 - 51538794
Alignment:
Q  13 aaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacagtcaa 112  Q
    |||||| ||||||| |||||| ||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||    
T  51538635 aaaatggaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatggaagcatatttatagcctaaaacaagtcctaagtcattaatacagtcaa 51538734  T
Q  113 tgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctctgaatctttccg 172  Q
    ||||||| |||| ||||||| ||| ||||||||||| ||||||||| |||||||||||||    
T  51538735 tgaaaacatgttggtggttgcaactgtccaaacccacattaatggccctgaatctttccg 51538794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 9 - 161
Target Start/End: Original strand, 6963440 - 6963592
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||| ||||||| |||||| ||||||||||||||||| | |||||||||||||| |||||||||||||||| ||||||||| |||||| || ||    
T  6963440 gaagaaaatggaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatggaagcctatttatagcctaaaataagtcctaggtcattactatag 6963539  T
Q  109 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctct 161  Q
    |||||||||| ||||||||| ||||||||||||||||||| ||||||||||||    
T  6963540 tcaatgaaaatgtgttagtgattgtaaccgtccaaacccacattaatggctct 6963592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 9 - 161
Target Start/End: Complemental strand, 168692 - 168540
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||| | ||||||| |||||| ||||||||||||||||| | |||||||||||||  ||||||||| |||||||||||| ||| ||||||||||||    
T  168692 gaagaaaagggaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatggaaggctatttatagtctaaaacaagtcataggtcattaatacag 168593  T
Q  109 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctct 161  Q
    ||||||||||||||||||||||||||| |||||||||||| |||| |||||||    
T  168592 tcaatgaaaacgtgttagtggttgtaaacgtccaaacccacattagtggctct 168540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 9 - 161
Target Start/End: Complemental strand, 15542992 - 15542841
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||| ||||||| |||||| ||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||| |||||| || ||    
T  15542992 gaagaaaatggaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatggaagcctatttatagcctaaaacaagtcctaggtcattactatag 15542893  T
Q  109 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctct 161  Q
    ||||||||||||||||||| ||| |||||||||||||||| |||||| |||||    
T  15542892 tcaatgaaaacgtgttagt-gttttaaccgtccaaacccacattaattgctct 15542841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 9 - 145
Target Start/End: Original strand, 16451916 - 16452052
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||  ||||||| |||||| ||||||||||||||||| |  ||||||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  16451916 gaagaaaattgaagaaaagaggtgaagtgaagaatgaaggtatctgctgaagatggaagcctatttatagcctaaaacaagtcctagatcattactacag 16452015  T
Q  109 tcaatgaaaacgtgttagtggttgtaaccgtccaaac 145  Q
    ||||||||||||||||||||||||||||||| |||||    
T  16452016 tcaatgaaaacgtgttagtggttgtaaccgttcaaac 16452052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 9 - 161
Target Start/End: Original strand, 45924584 - 45924736
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||| ||||||| |||| | |||| |||||||||||| | |||||||| ||| | |||||||||||||||||||||| ||| ||||||||||||    
T  45924584 gaagaaaatggaagaaaagaggttaagtgaggaatgaaggtatttgttgaagattgaaacctatttatagcctaaaacaagtcataggtcattaatacag 45924683  T
Q  109 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctct 161  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  45924684 tcaatgaaaacgtgttagtggttgcaaccgtccaaacccacattaatggctct 45924736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 12 - 169
Target Start/End: Original strand, 55136654 - 55136814
Alignment:
Q  12 gaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacagtca 111  Q
    ||||||||||||||| |||||| ||||||||||||||||| | ||||||||| |||| |||||||||||||||||||||| ||| ||||||||||| |||    
T  55136654 gaaaatgtaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatgaaagcctatttatagcctaaaacaagtcataggtcattaatacaatca 55136753  T
Q  112 atgaaaacgtgttagtg---gttgtaaccgtccaaacccatattaatggctctgaatcttt 169  Q
    |||| ||||||||||||   |||||||||||||||||||| |||||||| | |||||||||    
T  55136754 atgataacgtgttagtggttgttgtaaccgtccaaacccacattaatggatttgaatcttt 55136814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 9 - 172
Target Start/End: Complemental strand, 38218417 - 38218251
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    ||||||||||||| |||| |||||| |||||||||| |||||| | |||||||||||||| ||||||||| ||||||||||| |||| ||||||||||||    
T  38218417 gaagaaaatgtaaaaaaagaggtgaagtgaagaatgtaggtatttgttgaagatggaagcctatttataggctaaaacaagttctaggtcattaatacag 38218318  T
Q  109 tcaatgaaaacgtgttagtgg---ttgtaaccgtccaaacccatattaatggctctgaatctttccg 172  Q
    |||||||||||||||||||||   |||||| |||||||||||| |||| ||||||| || |||||||    
T  38218317 tcaatgaaaacgtgttagtggttgttgtaatcgtccaaacccacattagtggctctaaacctttccg 38218251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 9 - 172
Target Start/End: Complemental strand, 43842029 - 43841863
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||||||||||| ||||||  ||||||||||| |||| | ||||||||| |||  |||||||||||||||||||||| ||| ||||||||||||    
T  43842029 gaagaaaatgtaagaaaataggtgaattgaagaatgaatgtatttgttgaagatgaaagtctatttatagcctaaaacaagtcataggtcattaatacag 43841930  T
Q  109 tcaatgaaaacgtgttagtgg---ttgtaaccgtccaaacccatattaatggctctgaatctttccg 172  Q
    ||||| ||||||| |||||||   ||||||||||||||||||| |||||||||| ||||||||||||    
T  43841929 tcaattaaaacgtcttagtggttgttgtaaccgtccaaacccacattaatggctatgaatctttccg 43841863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 13 - 169
Target Start/End: Complemental strand, 9036247 - 9036089
Alignment:
Q  13 aaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacagtcaa 112  Q
    |||||||||||||| ||||||  ||||||||||| |||| | ||||||||| |||| |||||||||||||||| ||||||||  ||||||||||||||||    
T  9036247 aaaatgtaagaaaagaggtgaaatgaagaatgaatgtatttgttgaagatgaaagcctatttatagcctaaaa-aagtcctaagtcattaatacagtcaa 9036149  T
Q  113 tgaaaacgtgttagtg---gttgtaaccgtccaaacccatattaatggctctgaatcttt 169  Q
    ||||||||||||||||   |||||||||||||||||||| ||||||| ||||||||||||    
T  9036148 tgaaaacgtgttagtggttgttgtaaccgtccaaacccacattaatgactctgaatcttt 9036089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 10 - 161
Target Start/End: Complemental strand, 28311042 - 28310890
Alignment:
Q  10 aagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaa-gtcctagatcattaatacag 108  Q
    ||||||||| || |||| ||||||  |||||||||||||||| | |||||||||||||| |||||||||  |||||||| ||| ||| |||||||||| |    
T  28311042 aagaaaatggaataaaagaggtgaaatgaagaatgaaggtatttgttgaagatggaagcctatttatagtataaaacaaagtcttaggtcattaatacgg 28310943  T
Q  109 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctct 161  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||||| ||||    
T  28310942 tcaatgaaaacgtgttagtggttgtaaccgttcaaacccacattaatgactct 28310890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 9 - 161
Target Start/End: Complemental strand, 35320048 - 35319896
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||| ||||||| |||||| ||| |||||||| |||| | |||||||||||||| |||||||||| ||||||||||| ||| |||||| || ||    
T  35320048 gaagaaaatggaagaaaagaggtgaagtggagaatgaaagtatttgttgaagatggaagcctatttatagcttaaaacaagtcataggtcattactatag 35319949  T
Q  109 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctct 161  Q
    | ||||||||||||||||| ||||||||||||||||| || ||||||| ||||    
T  35319948 ttaatgaaaacgtgttagtagttgtaaccgtccaaactcacattaatgactct 35319896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 43 - 172
Target Start/End: Complemental strand, 56463767 - 56463635
Alignment:
Q  43 tgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacagtcaatgaaaacgtgttagtgg---ttgtaaccgt 139  Q
    ||||||||| | |||||||||||||| |||||||||||||||||||||||  | |||||||||||||||||||||| ||||||||||   ||||||||||    
T  56463767 tgaaggtatttgttgaagatggaagcctatttatagcctaaaacaagtccacggtcattaatacagtcaatgaaaatgtgttagtggttgttgtaaccgt 56463668  T
Q  140 ccaaacccatattaatggctctgaatctttccg 172  Q
    ||||||||| ||||||||||| || ||||||||    
T  56463667 ccaaacccacattaatggctccgagtctttccg 56463635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 9 - 100
Target Start/End: Complemental strand, 39807429 - 39807338
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcat 100  Q
    |||||||||||||||||| |||||| |||||||||||||| || | ||||||||| |||| |||||||||| |||||||| |||||||||||    
T  39807429 gaagaaaatgtaagaaaagaggtgaagtgaagaatgaaggaatttgttgaagatgaaagcctatttatagcgtaaaacaaatcctagatcat 39807338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 4 - 100
Target Start/End: Original strand, 40602722 - 40602818
Alignment:
Q  4 atgtcgaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcat 100  Q
    |||| |||||||| ||||||||| |||||| ||||||||||||||  | | ||||||||| |||| |||||||||| | ||||||||||||||||||    
T  40602722 atgttgaagaaaaagtaagaaaagaggtgaagtgaagaatgaaggagtttgttgaagatgtaagcctatttatagcattaaacaagtcctagatcat 40602818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 124
Target Start/End: Complemental strand, 34953712 - 34953601
Alignment:
Q  13 aaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacagtcaa 112  Q
    |||| |||||||||||||||| ||||||||| |||   | | ||||||||| || | |||||||||||||||| |||||||||||||| | |||||||||    
T  34953712 aaaaagtaagaaaaaaggtgaagtgaagaataaagaagtttgttgaagatgcaaacctatttatagcctaaaataagtcctagatcataactacagtcaa 34953613  T
Q  113 tgaaaacgtgtt 124  Q
      ||||||||||    
T  34953612 ataaaacgtgtt 34953601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 9 - 124
Target Start/End: Original strand, 20516652 - 20516770
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtga---agaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaa-t 104  Q
    |||||||| ||||||||| |||||| ||||   |||||||||| || | ||||||||| |||| ||||||||||||||||||| |||||||| ||||| |    
T  20516652 gaagaaaaagtaagaaaagaggtgaagtgatgaagaatgaaggaatttgttgaagatgcaagcctatttatagcctaaaacaaatcctagat-attaact 20516750  T
Q  105 acagtcaatgaaaacgtgtt 124  Q
    ||||||||  ||||||||||    
T  20516751 acagtcaaataaaacgtgtt 20516770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 100
Target Start/End: Original strand, 56084099 - 56084189
Alignment:
Q  10 aagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcat 100  Q
    ||||||| ||||||||| | | || |||||||||||| | || | ||||| ||| |||| |||||||||||| ||||||||||||||||||    
T  56084099 aagaaaaagtaagaaaagatgagaagtgaagaatgaatgaatttgttgaatatgcaagcatatttatagccttaaacaagtcctagatcat 56084189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 124; Significance: 8e-64; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 9 - 172
Target Start/End: Complemental strand, 42882742 - 42882579
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||||||||||| |||||||||||||||||||| ||| | |||||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  42882742 gaagaaaatgtaagaaaagaggtgatgtgaagaatgaagatatttgttgaagatggaagcctatttatagcctaaaacaagtcctaggtcattaatacag 42882643  T
Q  109 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctctgaatctttccg 172  Q
    |||||||||| |||||||||||||||||| |||||||||| | |||||||||||||||||||||    
T  42882642 tcaatgaaaatgtgttagtggttgtaaccatccaaacccacaataatggctctgaatctttccg 42882579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 9 - 172
Target Start/End: Original strand, 37952286 - 37952449
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    ||||||||| |||||||| |||||| ||||||||||||||||| | |||||||||||||| | |||||||||||||||||||||||| ||||||||||||    
T  37952286 gaagaaaatataagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatggaagcctttttatagcctaaaacaagtcctaggtcattaatacag 37952385  T
Q  109 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctctgaatctttccg 172  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||    
T  37952386 tcaatgaaaacgtgttagtggttgtaacggtccaaacccacattaatgactctgaatctttccg 37952449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 10 - 161
Target Start/End: Original strand, 41091154 - 41091305
Alignment:
Q  10 aagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacagt 109  Q
    ||||||||| ||||||| | |||| ||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  41091154 aagaaaatggaagaaaagaagtgaagtgaagaatgaaggtatttgttgaagatggaagcctatttatagcctaaaacaagtcctaggtcattaatacagt 41091253  T
Q  110 caatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctct 161  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  41091254 caatgaaaacgtgttagtggttgtaaccgtccaaacccacattaatggctct 41091305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 9 - 161
Target Start/End: Complemental strand, 50262144 - 50261992
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||| ||||||| |||||| ||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  50262144 gaagaaaatggaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatggaagcctatttatagcctaaaacaagtcctaggtcattaatacag 50262045  T
Q  109 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctct 161  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||||| ||||    
T  50262044 tcaatgaaaacgtgttagtggttgtaaccgttcaaacccacattaatgactct 50261992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 9 - 172
Target Start/End: Original strand, 44496471 - 44496634
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||| ||||||| |||||  |||||||||||| |||| | ||||||||| |||| |||||||||||||||||||||||||  ||||||||||||    
T  44496471 gaagaaaatggaagaaaataggtggagtgaagaatgaaagtatttgttgaagatgaaagcctatttatagcctaaaacaagtcctatgtcattaatacag 44496570  T
Q  109 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctctgaatctttccg 172  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  44496571 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccacattaatggctttgaatctttccg 44496634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 9 - 173
Target Start/End: Original strand, 29961383 - 29961547
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||||||||||| | |||| ||||||||||||||||| | |||||||||||||  |||||||||||||||| ||||| ||  |||||||||||     
T  29961383 gaagaaaatgtaagaaaagatgtgaagtgaagaatgaaggtatttgttgaagatggaagtctatttatagcctaaaataagtcttaagtcattaatacaa 29961482  T
Q  109 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctctgaatctttccga 173  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  29961483 tcaatgaaaacgtgttagtggttgtaaccgttcaaacccacattaatggctctgaatctttccga 29961547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 9 - 161
Target Start/End: Complemental strand, 41900440 - 41900288
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||| ||||||| |||| | ||||||||||||||||| | |||||||||||||| |||||||||||||||||||||| ||| ||||||||||||    
T  41900440 gaagaaaatggaagaaaagaggtaaggtgaagaatgaaggtatttattgaagatggaagcctatttatagcctaaaacaagtcataggtcattaatacag 41900341  T
Q  109 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctct 161  Q
    |||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  41900340 tcaatgaaaatgtgttagtggttgtaaccgtccaaacccacattaatggctct 41900288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 9 - 171
Target Start/End: Complemental strand, 12700691 - 12700526
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||||||||||| |||| | ||||||||||||| ||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  12700691 gaagaaaatgtaagaaaagaggtcaagtgaagaatgaagatatttgttgaagatggaagcctatttatagcctaaaacaagtcctagatcattaatacag 12700592  T
Q  109 tcaatgaaaacgtgttag---tggttgtaaccgtccaaacccatattaatggctctgaatctttcc 171  Q
    |||||||||| |||||||   |||||||||| |||||||| || ||||||||||||||||||||||    
T  12700591 tcaatgaaaatgtgttagtggtggttgtaactgtccaaacgcacattaatggctctgaatctttcc 12700526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 10 - 161
Target Start/End: Original strand, 41086386 - 41086537
Alignment:
Q  10 aagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacagt 109  Q
    ||||||||| ||||||| | |||| ||||||||||||||||| | |||||||||||||| ||||||||| |||||||||||||||| |||||||||||||    
T  41086386 aagaaaatggaagaaaagaagtgaagtgaagaatgaaggtatttgttgaagatggaagcctatttatagtctaaaacaagtcctaggtcattaatacagt 41086485  T
Q  110 caatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctct 161  Q
    |||||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  41086486 caatgaaaacgtgttagtggttgtaaccttccaaacccacattaatggctct 41086537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 9 - 172
Target Start/End: Complemental strand, 14587495 - 14587326
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagct---tatttatagcctaaaacaagtcctagatcattaata 105  Q
    |||||||||||||||||| |||||| ||||||||||||||||| | ||||||||||||||    |||||||||||||||||||||||||  |||||||||    
T  14587495 gaagaaaatgtaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatggaagccgcctatttatagcctaaaacaagtcctaagtcattaata 14587396  T
Q  106 cagtcaatgaaaacgtgttagtgg---ttgtaaccgtccaaacccatattaatggctctgaatctttccg 172  Q
    ||||||||||||||||||||||||   ||||||||||||||||||| || ||||||||||||||||||||    
T  14587395 cagtcaatgaaaacgtgttagtggttgttgtaaccgtccaaacccacataaatggctctgaatctttccg 14587326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 9 - 161
Target Start/End: Original strand, 12528431 - 12528583
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||| ||||||| |||||| ||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  12528431 gaagaaaatggaagaaaataggtgaagtgaagaatgaaggtatttgttgaagatggaagcctatttatagcctaaaacaagtcctaggtcattaatacag 12528530  T
Q  109 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctct 161  Q
    |||||||||||||||| ||||||||||||||| |||  |||||||||| ||||    
T  12528531 tcaatgaaaacgtgttggtggttgtaaccgtcgaaattcatattaatgactct 12528583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 9 - 161
Target Start/End: Original strand, 38860662 - 38860814
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||| | ||||||| |||||| ||||||||||||||||| | ||||||||| |||| |||||||||||||||||||||| |||||||||||||||     
T  38860662 gaagaaaacggaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatgaaagcctatttatagcctaaaacaagtcatagatcattaatacat 38860761  T
Q  109 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctct 161  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  38860762 tcaatgaaaacgtgttagtggtagtaaccgtccaaacccacattaatggctct 38860814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 9 - 171
Target Start/End: Original strand, 33801349 - 33801514
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||||||||||| |||||| |||||||||| |||||| | |||||||||||||| |||||||||||||||||||||||||  |||||| |||||    
T  33801349 gaagaaaatgtaagaaaagaggtgaagtgaagaatgtaggtattttttgaagatggaagcctatttatagcctaaaacaagtcctaagtcattattacag 33801448  T
Q  109 tcaatgaaaacgtgttagtggt---tgtaaccgtccaaacccatattaatggctctgaatctttcc 171  Q
    ||||||||||||||||||||||   ||||| |||||||||||| ||||||| ||||||||||||||    
T  33801449 tcaatgaaaacgtgttagtggttgctgtaatcgtccaaacccacattaatgactctgaatctttcc 33801514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 9 - 161
Target Start/End: Complemental strand, 11952573 - 11952421
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||| ||||||| |||||| ||||||||||||||||| | |||||||||||||| |||||||||||||||| ||||| |   ||||||||||||    
T  11952573 gaagaaaatggaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatggaagcctatttatagcctaaaataagtcttttgtcattaatacag 11952474  T
Q  109 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctct 161  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  11952473 tcaatgaaaacgtgttagtggttgtaaccgtccaaactcacattaatggctct 11952421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 9 - 161
Target Start/End: Original strand, 49851694 - 49851846
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||| ||||||| |||||| ||||||||||||||||| | ||||||||| |||| |||||||||||||||||||||||||| |||||| |||||    
T  49851694 gaagaaaatggaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatgaaagcctatttatagcctaaaacaagtcctaggtcattagtacag 49851793  T
Q  109 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctct 161  Q
    ||||||||||| |||||||||||||||||||||||||| | ||| ||||||||    
T  49851794 tcaatgaaaacatgttagtggttgtaaccgtccaaacctacattgatggctct 49851846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 9 - 172
Target Start/End: Complemental strand, 3517727 - 3517564
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||||||||||| |||||| ||||||||||||||||| | ||||||||  |||  ||||||||||||||||||| |||||| ||||   |||||    
T  3517727 gaagaaaatgtaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagataaaagtctatttatagcctaaaacaactcctaggtcat---tacag 3517631  T
Q  109 tcaatgaaaacgtgttagtg---gttgtaaccgtccaaacccatattaatggctctgaatctttccg 172  Q
    ||||||||||||||||||||   |||||||||||||||||||| |||||||||||||||||||||||    
T  3517630 tcaatgaaaacgtgttagtggttgttgtaaccgtccaaacccacattaatggctctgaatctttccg 3517564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 13 - 159
Target Start/End: Complemental strand, 52632508 - 52632362
Alignment:
Q  13 aaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacagtcaa 112  Q
    |||||| | ||||| |||||| |||||||||||||  || | |||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||    
T  52632508 aaaatggaggaaaagaggtgaagtgaagaatgaagacatttgttgaagatggaagcctatttatagcctaaaacaagtcctaggtcattaatacaatcaa 52632409  T
Q  113 tgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggct 159  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||||    
T  52632408 tgaaaacgtgttagtggttgtaaccgtctaaacccacattaatggct 52632362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 9 - 145
Target Start/End: Original strand, 27216784 - 27216920
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||| ||||||| |||||| |||||||||||| |||| | ||||||||| |||| |||||||||||||||||||||||||| |||||| ||||     
T  27216784 gaagaaaatggaagaaaagaggtgaagtgaagaatgaaagtattttttgaagatgaaagcctatttatagcctaaaacaagtcctaggtcattagtacaa 27216883  T
Q  109 tcaatgaaaacgtgttagtggttgtaaccgtccaaac 145  Q
    |||||||||||||||||||||||||||||||||||||    
T  27216884 tcaatgaaaacgtgttagtggttgtaaccgtccaaac 27216920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 10 - 161
Target Start/End: Complemental strand, 23984187 - 23984039
Alignment:
Q  10 aagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacagt 109  Q
    ||||||||| ||||||| |||||| ||||||||||||||||| | |||||||||||| | |||||||||||||||||||||||||| ||||   ||||||    
T  23984187 aagaaaatggaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatggaaacctatttatagcctaaaacaagtcctaggtcat---tacagt 23984091  T
Q  110 caatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctct 161  Q
    |||||||||| |||||||||||||||||||||||||||  ||||||| ||||    
T  23984090 caatgaaaacatgttagtggttgtaaccgtccaaaccctcattaatgactct 23984039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 9 - 169
Target Start/End: Original strand, 41723514 - 41723676
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||| ||||||| |||||| ||||||||||||||||| | ||||||||| |||| |||||||||||||||||||||| ||| ||||||||| ||    
T  41723514 gaagaaaatggaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatgaaagcctatttatagcctaaaacaagtc-taggtcattaatatag 41723612  T
Q  109 tcaatgaaaacgtgttagtggttgta---accgtccaaacccatattaatggctctgaatcttt 169  Q
    |||||||||||||||| ||||||||    | |||||||||||| ||||||||||||||||||||    
T  41723613 tcaatgaaaacgtgttggtggttgttgttatcgtccaaacccacattaatggctctgaatcttt 41723676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 9 - 111
Target Start/End: Complemental strand, 44757683 - 44757581
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||||||||||| |||||| ||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  44757683 gaagaaaatgtaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatggaagcctatttatagcctaaaacaagtcctaggtcattaatacag 44757584  T
Q  109 tca 111  Q
    |||    
T  44757583 tca 44757581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 103 - 169
Target Start/End: Complemental strand, 48964986 - 48964920
Alignment:
Q  103 atacagtcaatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctctgaatcttt 169  Q
    |||||||||||||||||||||||||| || |||||||||||||||| ||||||| ||||||||||||    
T  48964986 atacagtcaatgaaaacgtgttagtgattctaaccgtccaaacccacattaatgactctgaatcttt 48964920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 100
Target Start/End: Original strand, 34549840 - 34549931
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcat 100  Q
    |||| ||| ||||||||| |||||| |||||||||||||| || | ||||| ||| || | |||||||||||||||||||||||||||||||    
T  34549840 gaagtaaaagtaagaaaacaggtgacgtgaagaatgaaggaatttgttgaatatgcaaacctatttatagcctaaaacaagtcctagatcat 34549931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 22858743 - 22858801
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaag 67  Q
    |||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||    
T  22858743 gaagaaaatgtaagaaaagaggtgatgtgaagaatgaaggtatttgttgaagatggaag 22858801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 48965052 - 48964984
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttata 77  Q
    |||||||||||||||||| ||||||| ||||||||||| |||| | |||||||||||||| ||||||||    
T  48965052 gaagaaaatgtaagaaaagaggtgatatgaagaatgaacgtatttgttgaagatggaagcctatttata 48964984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 125 - 172
Target Start/End: Original strand, 22858800 - 22858847
Alignment:
Q  125 agtggttgtaaccgtccaaacccatattaatggctctgaatctttccg 172  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||||    
T  22858800 agtggttgtaaccgtcaaaacccacattaatggctctgaatctttccg 22858847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 94
Target Start/End: Complemental strand, 30518290 - 30518205
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtccta 94  Q
    |||||||||| ||||||| || | | |||||||||||||  || | ||||| ||| |||| |||||||||||||||||||||||||    
T  30518290 gaagaaaatgaaagaaaagagattaagtgaagaatgaagaaattttttgaacatgcaagcctatttatagcctaaaacaagtccta 30518205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 124
Target Start/End: Original strand, 29913813 - 29913928
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||||||| ||| |||||   ||||||||||||  |  | | ||||||  ||||||||||||| || |||||||||||||| | || | |||||    
T  29913813 gaagaaaatgtaagtaaagaggtgtaatgaagaatgaagaaaattgtagaagattcaagcttatttataacccaaaacaagtcctaggttataagtacag 29913912  T
Q  109 tcaatgaaaacgtgtt 124  Q
     |||||||||||||||    
T  29913913 acaatgaaaacgtgtt 29913928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 91
Target Start/End: Complemental strand, 22335016 - 22334962
Alignment:
Q  37 gaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtc 91  Q
    |||||||||||| | || |||||||| ||||| | ||||||||||||||||||||    
T  22335016 gaagaatgaaggaaaatgttgaagatcgaagcctttttatagcctaaaacaagtc 22334962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 91
Target Start/End: Complemental strand, 12525046 - 12524965
Alignment:
Q  9 gaagaaaatgtaagaaaa-aaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtc 91  Q
    |||||||||||||||||| | |||||   |||||||||||| | || ||||||||  |||| | ||||||||||||||||||||    
T  12525046 gaagaaaatgtaagaaaagagggtga--agaagaatgaaggaaaatgttgaagatccaagcctttttatagcctaaaacaagtc 12524965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 120; Significance: 2e-61; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 9 - 172
Target Start/End: Complemental strand, 8240139 - 8239976
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||| |||||||||||||| ||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||  | ||||||||||    
T  8240139 gaagaaaatggaagaaaaaaggtgaagtgaagaatgaaggtatttgttgaagatggaagcctatttatagcctaaaacaagtcctatgttattaatacag 8240040  T
Q  109 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctctgaatctttccg 172  Q
    | |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  8240039 ttaatgaaaacgtgttagtggttgtaaccgtccaaacccacaataatggctctgaatctttccg 8239976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 9 - 172
Target Start/End: Complemental strand, 39318747 - 39318584
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||| ||||||| |||||| ||||| ||||||||||| | |||||||||||||| |||||||||||||||||||||| ||| ||||||||||||    
T  39318747 gaagaaaatggaagaaaagaggtgaagtgaataatgaaggtatttgttgaagatggaagcctatttatagcctaaaacaagtcataggtcattaatacag 39318648  T
Q  109 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctctgaatctttccg 172  Q
    |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  39318647 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccacaataatggctctgaatctttccg 39318584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 9 - 172
Target Start/End: Complemental strand, 35684167 - 35684004
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||| |||||||  ||||| ||||||||||||||||| | |||||||||||||| ||||||||||||||||||||| || | ||||||| ||||    
T  35684167 gaagaaaatggaagaaaattggtgaagtgaagaatgaaggtatttgttgaagatggaagcctatttatagcctaaaacaagtactgggtcattaaaacag 35684068  T
Q  109 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctctgaatctttccg 172  Q
    |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  35684067 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccacaataatggctctgaatctttccg 35684004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 9 - 172
Target Start/End: Complemental strand, 40105401 - 40105238
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||| ||||||| ||||||  |||||||||||||||| | ||||||||| |||| |||||||||||||||||||||||||| ||||||||||||    
T  40105401 gaagaaaatggaagaaaagaggtgaattgaagaatgaaggtatttgttgaagatgaaagcctatttatagcctaaaacaagtcctaggtcattaatacag 40105302  T
Q  109 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctctgaatctttccg 172  Q
    |||||||||||||||||||||||| ||||||||||||||| | ||||| |||||||||||||||    
T  40105301 tcaatgaaaacgtgttagtggttgcaaccgtccaaacccacaataatgactctgaatctttccg 40105238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 9 - 161
Target Start/End: Complemental strand, 43098697 - 43098545
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||| ||||||| |||||| |||||||||||| |||| | |||||||||||||| |||||||||||||||||||||||||| |||||| || ||    
T  43098697 gaagaaaatggaagaaaagaggtgaagtgaagaatgaatgtatttgttgaagatggaagcctatttatagcctaaaacaagtcctaggtcattattatag 43098598  T
Q  109 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctct 161  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  43098597 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccacattaatggctct 43098545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 9 - 161
Target Start/End: Original strand, 6347281 - 6347433
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||| ||||||| ||||||  |||||||||||||||| | |||||||||||||| | |||||||||||||||||||||||| |||||| |||||    
T  6347281 gaagaaaatggaagaaaagaggtgaaatgaagaatgaaggtatttgttgaagatggaagcatgtttatagcctaaaacaagtcctaggtcattagtacag 6347380  T
Q  109 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctct 161  Q
    | |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  6347381 taaatgaaaacgtgttagtggttgtaaccgtccaaacccacattaatggctct 6347433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 9 - 173
Target Start/End: Original strand, 11076214 - 11076378
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||| ||||||| |||||| ||||||||| ||||||| | ||||| |||||||  ||||||||| |||||||||||||||| ||||||||||||    
T  11076214 gaagaaaatggaagaaaagaggtgaagtgaagaattaaggtatttgttgaaaatggaagtctatttatagtctaaaacaagtcctaggtcattaatacag 11076313  T
Q  109 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctctgaatctttccga 173  Q
    ||||| |||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||    
T  11076314 tcaataaaaacgtgttagtggttgtaaccgtccaaacccacaataatgactctgaatctttccga 11076378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 9 - 161
Target Start/End: Original strand, 37098319 - 37098471
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||| ||||||| |||||| ||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||| |  ||||||||||||    
T  37098319 gaagaaaatggaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatgaaagcttatttatagcctaaaacaagtcccatgtcattaatacag 37098418  T
Q  109 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctct 161  Q
    ||||| |||||||||||||||||||||||||| ||||||| ||||||||||||    
T  37098419 tcaataaaaacgtgttagtggttgtaaccgtctaaacccacattaatggctct 37098471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 9 - 172
Target Start/End: Complemental strand, 39260444 - 39260278
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||||||||||| |||||| |||||||||||| |||| | |||||||| ||||| |||||||||||||||||||||||||| ||||||||||||    
T  39260444 gaagaaaatgtaagaaaagaggtgaagtgaagaatgaatgtatttgttgaagatagaagcctatttatagcctaaaacaagtcctaggtcattaatacag 39260345  T
Q  109 tcaatgaaaacgtgtta---gtggttgtaaccgtccaaacccatattaatggctctgaatctttccg 172  Q
    ||||| |||||||||||   || |||||||||||||||||||| ||||||| |||||||||||||||    
T  39260344 tcaataaaaacgtgttaatggttgttgtaaccgtccaaacccacattaatgactctgaatctttccg 39260278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 9 - 161
Target Start/End: Original strand, 32337796 - 32337948
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||| ||||||| |||||| ||||||||||||||||| | |||||||||||||| ||||||||||||||| |||||||||| |||||| ||||     
T  32337796 gaagaaaatggaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatggaagcctatttatagcctaaaccaagtcctaggtcattagtacaa 32337895  T
Q  109 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctct 161  Q
    |||||||||||||||||||| ||||||||||||||||| | ||| ||||||||    
T  32337896 tcaatgaaaacgtgttagtgattgtaaccgtccaaacctacattgatggctct 32337948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 9 - 161
Target Start/End: Complemental strand, 31701196 - 31701047
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||| ||||||| |||||| ||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||| |||||| |||||    
T  31701196 gaagaaaatggaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatggaagcctatttatagcctaaaacaagtcctaggtcattactacag 31701097  T
Q  109 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctct 161  Q
    ||||||||||||||||| ||||| ||||||   ||||||| |||||| |||||    
T  31701096 tcaatgaaaacgtgttattggttataaccg---aaacccacattaatagctct 31701047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 32947065 - 32947183
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||||||||||| |||||| ||||||||||||||||| | |||||||| ||||| || ||||||||||||||||||||||| ||||||||||||    
T  32947065 gaagaaaatgtaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatagaagcctacttatagcctaaaacaagtcctaggtcattaatacag 32947164  T
Q  109 tcaatgaaaacgtgttagt 127  Q
    |||||||||||||||||||    
T  32947165 tcaatgaaaacgtgttagt 32947183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 9 - 161
Target Start/End: Complemental strand, 23144260 - 23144107
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatca-ttaataca 107  Q
    |||||||| | ||||||| |||||| ||||||||||||||||| | |||||||||||||| |||||||| ||||||||||||||||| ||| ||| ||||    
T  23144260 gaagaaaaaggaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatggaagcctatttataacctaaaacaagtcctaggtcatttactaca 23144161  T
Q  108 gtcaatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctct 161  Q
    |||||||||||| ||||||||||||||| |||||||||| | ||||||| ||||    
T  23144160 gtcaatgaaaacatgttagtggttgtaatcgtccaaacctacattaatgactct 23144107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 9 - 161
Target Start/End: Original strand, 627360 - 627512
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||  ||||||| |||||  ||||||||||||||||| | |||||||| ||||| |||||||||||||||||||||| ||| |||||| |||||    
T  627360 gaagaaaattgaagaaaagaggtggagtgaagaatgaaggtatttgttgaagatagaagcctatttatagcctaaaacaagtcttagttcattagtacag 627459  T
Q  109 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctct 161  Q
    ||||||||||| |||||||||||||||||||||||| | | ||| ||||||||    
T  627460 tcaatgaaaacttgttagtggttgtaaccgtccaaagctacattgatggctct 627512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 9 - 144
Target Start/End: Complemental strand, 586563 - 586428
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||  ||||||| |||||  ||||||||||||||||| | |||||||| ||||| |||||||||||||||||||||| ||| |||||| |||||    
T  586563 gaagaaaattgaagaaaagaggtggagtgaagaatgaaggtatttgttgaagatagaagcctatttatagcctaaaacaagtcttagttcattagtacag 586464  T
Q  109 tcaatgaaaacgtgttagtggttgtaaccgtccaaa 144  Q
    ||||||||||| ||||||||||||||||||||||||    
T  586463 tcaatgaaaacttgttagtggttgtaaccgtccaaa 586428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 30 - 161
Target Start/End: Original strand, 20091867 - 20091998
Alignment:
Q  30 gtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacagtcaatgaaaacgtgttagtgg 129  Q
    |||| ||||||||||||||||| | |||||||||||||| ||| |||||||||||||||||||||  |||||| ||| ||||||||||||||||||||||    
T  20091867 gtgaagtgaagaatgaaggtatttgttgaagatggaagcctatatatagcctaaaacaagtcctatgtcattactacggtcaatgaaaacgtgttagtgg 20091966  T
Q  130 ttgtaaccgtccaaacccatattaatggctct 161  Q
    ||||||| ||||||||| | ||||||||||||    
T  20091967 ttgtaactgtccaaaccgacattaatggctct 20091998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 129 - 172
Target Start/End: Complemental strand, 42131932 - 42131889
Alignment:
Q  129 gttgtaaccgtccaaacccatattaatggctctgaatctttccg 172  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  42131932 gttgtaaccgtccaaacccatattaatggctctgaatctttccg 42131889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 121
Target Start/End: Original strand, 28284449 - 28284548
Alignment:
Q  22 gaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacagtcaatgaaaacgt 121  Q
    ||||| |||||| |||||||||||||| || | ||||||||| || | |||||| ||||||||||| |||||||||||| | ||| |||||  |||||||    
T  28284449 gaaaagaggtgaagtgaagaatgaaggaatttgttgaagatgcaaacctatttacagcctaaaacatgtcctagatcataactacggtcaaataaaacgt 28284548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 161
Target Start/End: Complemental strand, 13546309 - 13546259
Alignment:
Q  111 aatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctct 161  Q
    ||||||||  ||||||||||||||||||||||||| || ||||||||||||    
T  13546309 aatgaaaagctgttagtggttgtaaccgtccaaacacacattaatggctct 13546259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 161
Target Start/End: Original strand, 13678164 - 13678214
Alignment:
Q  111 aatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctct 161  Q
    ||||||||  ||||||||||||||||||||||||| || ||||||||||||    
T  13678164 aatgaaaagctgttagtggttgtaaccgtccaaacacacattaatggctct 13678214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 42132020 - 42131968
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaaga 61  Q
    |||||||||||| ||||| |||||| ||||||||||||||||| | |||||||    
T  42132020 gaagaaaatgtacgaaaagaggtgaagtgaagaatgaaggtatttgttgaaga 42131968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 11457018 - 11457100
Alignment:
Q  16 atgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatc 98  Q
    ||||||||||| |||| | ||||| || ||||  || | |||||||||||||| | |||||| ||||||||||||| ||||||    
T  11457018 atgtaagaaaagaggttaagtgaaaaaggaagaaatttgttgaagatggaagcctgtttataacctaaaacaagtcatagatc 11457100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 9 - 172
Target Start/End: Original strand, 8734680 - 8734842
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||||||||||| |||||| ||||||||||||||||| | || | ||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  8734680 gaagaaaatgtaagaaaagaggtgaagtgaagaatgaaggtatttgttca-gatggaagcctatttatagcctaaaacaagtcctaggtcattaatacag 8734778  T
Q  109 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctctgaatctttccg 172  Q
    ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  8734779 tcaatgaaaacgtgttagtggttgtaatcgtccaaacccacattaatggctctgaatctttccg 8734842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 9 - 172
Target Start/End: Original strand, 27114290 - 27114453
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||| ||||||| |||||| ||||||||||||| ||| | |||||||||||||| |||||||||||||||||||||||||  ||||||||||||    
T  27114290 gaagaaaatggaagaaaagaggtgaagtgaagaatgaagatatttgttgaagatggaagcctatttatagcctaaaacaagtcctatgtcattaatacag 27114389  T
Q  109 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctctgaatctttccg 172  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||    
T  27114390 tcaatgaaaacgtgttggtggttgtaaccgtccaaacccacattaatggctctgaatctttccg 27114453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 9 - 169
Target Start/End: Original strand, 37012810 - 37012970
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||| ||||||| |||||| |||||||||||| |||| | |||||||||||||| ||||||||||||||||||||| |||| ||||| ||||||    
T  37012810 gaagaaaatggaagaaaagaggtgaagtgaagaatgaaagtatttgttgaagatggaagcctatttatagcctaaaacaagttctaggtcattcatacag 37012909  T
Q  109 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctctgaatcttt 169  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  37012910 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccacattaatggctctgaatcttt 37012970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 9 - 173
Target Start/End: Complemental strand, 13822224 - 13822057
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||||||||||| |||||| ||||||||||||||||| | |||||||||||| | |||||||||||||||||||||| ||||||||||||||||    
T  13822224 gaagaaaatgtaagaaaagaggtgaggtgaagaatgaaggtatttgttgaagatggaaacctatttatagcctaaaacaagtcatagatcattaatacag 13822125  T
Q  109 tcaatgaaaacgtgttagtgg---ttgtaaccgtccaaacccatattaatggctctgaatctttccga 173  Q
    |||||||||||||||||||||   |||||||||| |||| ||| ||||||||||||||||||||||||    
T  13822124 tcaatgaaaacgtgttagtggttgttgtaaccgttcaaatccacattaatggctctgaatctttccga 13822057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 9 - 172
Target Start/End: Original strand, 8197394 - 8197560
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||||||||||| |||| | ||||||||||||||||| | |||||||||||||| ||||||||| |||||||||||||||| ||||||||||||    
T  8197394 gaagaaaatgtaagaaaataggtaaagtgaagaatgaaggtatttgttgaagatggaagcctatttatagtctaaaacaagtcctaggtcattaatacag 8197493  T
Q  109 tcaatgaaaacgtgttagtg---gttgtaaccgtccaaacccatattaatggctctgaatctttccg 172  Q
    ||||||||||||||||||||   |||||||||||||||||||| |||||||||||| ||||||||||    
T  8197494 tcaatgaaaacgtgttagtggttgttgtaaccgtccaaacccacattaatggctctaaatctttccg 8197560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 9 - 172
Target Start/End: Original strand, 12785140 - 12785306
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||||||||||| |||||| ||||||||||||||||| | |||||||| ||||| |||||||||||||||||||||||||| ||||||||||||    
T  12785140 gaagaaaatgtaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagattgaagcctatttatagcctaaaacaagtcctaggtcattaatacag 12785239  T
Q  109 tcaatgaaaacgtgttagtg---gttgtaaccgtccaaacccatattaatggctctgaatctttccg 172  Q
    ||||||||||||||||||||   |||||||||||||||||||| ||||| |||| ||||||||||||    
T  12785240 tcaatgaaaacgtgttagtggttgttgtaaccgtccaaacccacattaacggctatgaatctttccg 12785306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 9 - 161
Target Start/End: Complemental strand, 37030413 - 37030261
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||| ||||||| |||||| ||||||||||||||||| | |||||||||||||  |||||||||||||||||||||||||| ||||||||||||    
T  37030413 gaagaaaatggaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatggaagtctatttatagcctaaaacaagtcctaggtcattaatacag 37030314  T
Q  109 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctct 161  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  37030313 tcaatgaaaacgtgttagtggttgtaaccatccaaacccacattaatggctct 37030261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 9 - 169
Target Start/End: Original strand, 18808967 - 18809130
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||||||||||| |||||| ||||||||||||||||| | |||||||||||||  |||||||||||||||||||||| ||| ||||||||||||    
T  18808967 gaagaaaatgtaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatggaagactatttatagcctaaaacaagtcataggtcattaatacag 18809066  T
Q  109 tcaatgaaaacgtgttagtg---gttgtaaccgtccaaacccatattaatggctctgaatcttt 169  Q
    ||||||||||||||||||||   |||||||||||||||||| | ||||||||||||||||||||    
T  18809067 tcaatgaaaacgtgttagtggttgttgtaaccgtccaaacctacattaatggctctgaatcttt 18809130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 9 - 172
Target Start/End: Original strand, 12723657 - 12723823
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||||||||||| |||||| ||||||||||||||||| | ||||||||| || | |||||||||||||||||||||||||| ||||||||||||    
T  12723657 gaagaaaatgtaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatgaaaacctatttatagcctaaaacaagtcctaggtcattaatacag 12723756  T
Q  109 tcaatgaaaacgtgttagtg---gttgtaaccgtccaaacccatattaatggctctgaatctttccg 172  Q
    ||||||||||||||||||||   |||||||||||||||||||| ||||| | || ||||||||||||    
T  12723757 tcaatgaaaacgtgttagtggttgttgtaaccgtccaaacccacattaacgactatgaatctttccg 12723823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 9 - 172
Target Start/End: Original strand, 3556607 - 3556770
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||| ||||||| |||||| |||||||||||||| || | || ||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  3556607 gaagaaaatggaagaaaagaggtgaagtgaagaatgaaggaatttgttaaagatggaagcatatttatagcctaaaacaagtcctaggtcattaatacag 3556706  T
Q  109 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctctgaatctttccg 172  Q
    |||||||||||||||||||| |||||| |||||||||||| | ||| ||||| |||||||||||    
T  3556707 tcaatgaaaacgtgttagtgcttgtaatcgtccaaacccacaataacggctccgaatctttccg 3556770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 9 - 161
Target Start/End: Original strand, 26279020 - 26279172
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||| ||||||| | |||| ||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||| | |||||| |||||    
T  26279020 gaagaaaatggaagaaaagaagtgaagtgaagaatgaaggtatttgttgaagatggaagcctatttatagcctaaaacaagtcctgggtcattagtacag 26279119  T
Q  109 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctct 161  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||| ||||    
T  26279120 tcaatgaaaacgtgttagtggttgtaaccgtccaaacctacattaatgactct 26279172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 9 - 161
Target Start/End: Original strand, 37883410 - 37883562
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||| ||||||| | |||| ||||||||||||||||| | |||||||||||||| |||||||||| ||||||||||| ||| |||||| || ||    
T  37883410 gaagaaaatggaagaaaagatgtgaagtgaagaatgaaggtatttgttgaagatggaagcctatttatagcttaaaacaagtcttaggtcattactatag 37883509  T
Q  109 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctct 161  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  37883510 tcaatgaaaacatgttagtggttgtaaccgtccaaacccacattaatggctct 37883562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 9 - 172
Target Start/End: Complemental strand, 38679604 - 38679438
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||||||||||| |||||| |||||||||| || ||| | |||||||| ||||| |||||||||||||||||||||||||  ||||||||||||    
T  38679604 gaagaaaatgtaagaaaagaggtgaagtgaagaatgtagatatttgttgaagattgaagcctatttatagcctaaaacaagtcctaagtcattaatacag 38679505  T
Q  109 tcaatgaaaacgtgttagtgg---ttgtaaccgtccaaacccatattaatggctctgaatctttccg 172  Q
    |||||| ||| ||||||||||   ||||||||||||||| ||| |||||||||||||||||||||||    
T  38679504 tcaatgcaaaagtgttagtggttgttgtaaccgtccaaatccacattaatggctctgaatctttccg 38679438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 9 - 161
Target Start/End: Complemental strand, 25977283 - 25977135
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||| ||||||| |||||| ||||||||||||||| |    ||||||||||||| |||||||| ||||||||||||||||  |||||| |||||    
T  25977283 gaagaaaatggaagaaaagaggtgaagtgaagaatgaaggtgt----tgaagatggaagcctatttataacctaaaacaagtcctaagtcattactacag 25977188  T
Q  109 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctct 161  Q
    ||||||||||||||||||||||||||| |||||||||| | ||||||| ||||    
T  25977187 tcaatgaaaacgtgttagtggttgtaatcgtccaaacctacattaatgactct 25977135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 9 - 146
Target Start/End: Complemental strand, 9715464 - 9715327
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||| ||||||| |||||| ||||||||||||| ||| | |||||||||||||  |||||||||||||||| ||||| ||| |||||| | |||    
T  9715464 gaagaaaatggaagaaaagaggtgaagtgaagaatgaagctatttgttgaagatggaagtctatttatagcctaaaaaaagtcataggtcattagtgcag 9715365  T
Q  109 tcaatgaaaacgtgttagtggttgtaaccgtccaaacc 146  Q
    |||||||||||||||| |||||||||||||||||||||    
T  9715364 tcaatgaaaacgtgttggtggttgtaaccgtccaaacc 9715327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 9 - 161
Target Start/End: Complemental strand, 11720091 - 11719938
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaa-gaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaataca 107  Q
    |||||||||| ||||||| |||||| ||||| |||||||||||| | ||||||||| |||  ||||||| |||||||| ||||||||| |||||| ||||    
T  11720091 gaagaaaatgaaagaaaagaggtgaagtgaaagaatgaaggtatttgttgaagatgaaagtctatttatggcctaaaataagtcctaggtcattagtaca 11719992  T
Q  108 gtcaatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctct 161  Q
    ||||||||||||||||||||||| |||||||| |||||| | ||||||||||||    
T  11719991 gtcaatgaaaacgtgttagtggtcgtaaccgttcaaacctacattaatggctct 11719938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 9 - 170
Target Start/End: Complemental strand, 16513744 - 16513581
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||| ||||||| |||||| ||||||||||||||||| | ||||| || ||||| |||||||||  ||||||||||| ||| ||||||||||||    
T  16513744 gaagaaaatggaagaaaagaggtgaagtgaagaatgaaggtatttgttgaaaattgaagcctatttatagtttaaaacaagtcataggtcattaatacag 16513645  T
Q  109 tcaatgaaaacgtgttagtggttgt--aaccgtccaaacccatattaatggctctgaatctttc 170  Q
    || ||||||||||||||||||||||   | ||| |||| ||| | |||||||||||||||||||    
T  16513644 tcgatgaaaacgtgttagtggttgttgtaacgtacaaaaccacaataatggctctgaatctttc 16513581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 9 - 85
Target Start/End: Original strand, 15858804 - 15858880
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaa 85  Q
    |||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||    
T  15858804 gaagaaaatgtaagaaaagaggtgatgtgaagaatgaaggtatttgttgaagatggaagcctatttatagcctaaaa 15858880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 70 - 172
Target Start/End: Complemental strand, 8299313 - 8299208
Alignment:
Q  70 tatttatagcctaaaacaagtcctagatcattaatacagtcaatgaaaacgtgttagtg---gttgtaaccgtccaaacccatattaatggctctgaatc 166  Q
    ||||||||||||||||||| || ||| ||||||||||||||||| |||||||||| |||   ||||||||||| |||||||| ||||||| |||||||||    
T  8299313 tatttatagcctaaaacaattcttaggtcattaatacagtcaataaaaacgtgttggtggttgttgtaaccgttcaaacccaaattaatgactctgaatc 8299214  T
Q  167 tttccg 172  Q
    ||||||    
T  8299213 tttccg 8299208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 123
Target Start/End: Original strand, 27495147 - 27495261
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||||||||||| |||||| |||||||||||||  |  | ||||||||| |||  |||||||||||| |||| |||| ||| | || | |||||    
T  27495147 gaagaaaatgtaagaaaagaggtgaagtgaagaatgaagaaaattgttgaagatgaaagtctatttatagccttaaaccagtcataggtaataattacag 27495246  T
Q  109 tcaatgaaaacgtgt 123  Q
    ||||  |||||||||    
T  27495247 tcaactaaaacgtgt 27495261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 107
Target Start/End: Original strand, 23252461 - 23252558
Alignment:
Q  10 aagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaataca 107  Q
    ||||||| ||||||||| |||| | |||||||||||||| || | || |||||| ||| |||||||||| |||||| |||||||| || |||| ||||    
T  23252461 aagaaaacgtaagaaaagaggtaaagtgaagaatgaaggaatttgtttaagatgcaagtttatttatagtctaaaataagtcctaaataattattaca 23252558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 2606140 - 2606076
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatt 73  Q
    |||||||||| ||||||| | |||| ||||||||||||||||| | |||||||||||||| ||||    
T  2606140 gaagaaaatggaagaaaagatgtgaagtgaagaatgaaggtatttgttgaagatggaagcctatt 2606076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 8300922 - 8300864
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaag 67  Q
    |||||||||||||||||| | |||| |||||||||| |||||| | |||||||||||||    
T  8300922 gaagaaaatgtaagaaaagatgtgaagtgaagaatgtaggtatttgttgaagatggaag 8300864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 112
Target Start/End: Complemental strand, 27690584 - 27690482
Alignment:
Q  10 aagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacagt 109  Q
    ||||||||||||||||| | | || |||||||||||| | |  | ||||||||| |||| |||||||||||| |||  ||||||||| ||| | ||||||    
T  27690584 aagaaaatgtaagaaaagatgggaagtgaagaatgaatgaaattgttgaagatgcaagcatatttatagccttaaatcagtcctagaccataactacagt 27690485  T
Q  110 caa 112  Q
    |||    
T  27690484 caa 27690482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 86
Target Start/End: Complemental strand, 22911928 - 22911851
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaac 86  Q
    |||||||||||||||||| | |||  |||||||||||||| || |  ||||||||||| | |||| ||||||| ||||    
T  22911928 gaagaaaatgtaagaaaagaagtgtggtgaagaatgaaggaatttgatgaagatggaaacctattgatagccttaaac 22911851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 41616160 - 41616070
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcatt 101  Q
    |||||||||||||||||  |||||| |  || |||||||| | || ||||||||  |||| | ||||||||||||||||| |||||| |||||    
T  41616160 gaagaaaatgtaagaaaggaggtgaag--aataatgaaggaaaatgttgaagatccaagcctttttatagcctaaaacaaatcctaggtcatt 41616070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 113; Significance: 3e-57; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 9 - 172
Target Start/End: Complemental strand, 31723023 - 31722857
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||||||||||| || ||| ||||||||||||||| | | |||||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  31723023 gaagaaaatgtaagaaaagagatgaagtgaagaatgaaggtctttgttgaagatggaagcctatttatagcctaaaacaagtcctaggtcattaatacag 31722924  T
Q  109 tcaatgaaaacgtgttagtgg---ttgtaaccgtccaaacccatattaatggctctgaatctttccg 172  Q
    |||||||||||||||||||||   |||||||| |||||||||| |||||||||||||||||||||||    
T  31722923 tcaatgaaaacgtgttagtggttgttgtaaccatccaaacccacattaatggctctgaatctttccg 31722857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 9 - 160
Target Start/End: Original strand, 31318520 - 31318671
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||| ||||||| |||||| ||||||||||||||||| | ||||||||| |||| |||||||||||||||||||||||||| |||||| |||||    
T  31318520 gaagaaaatggaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatgaaagcctatttatagcctaaaacaagtcctaggtcattactacag 31318619  T
Q  109 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctc 160  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  31318620 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccacattaatggctc 31318671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 9 - 170
Target Start/End: Original strand, 31271335 - 31271496
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||| ||||||| |||||| ||||| |||||| |||| | |||||||||||||| |||||||||||||||||||||| ||| ||||||||||||    
T  31271335 gaagaaaatggaagaaaagaggtgaagtgaaaaatgaaagtatttgttgaagatggaagcctatttatagcctaaaacaagtcataggtcattaatacag 31271434  T
Q  109 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctctgaatctttc 170  Q
    | ||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||    
T  31271435 ttaatgaaaacgtgtaagtggttgtaatcgtccaaacccacattaatggctctgaatctttc 31271496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 9 - 172
Target Start/End: Complemental strand, 9305105 - 9304942
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||| || |||| |||||| |||| |||||||||||| | || ||| |  |||| |||||||||||||||||||||||||| ||||||||||||    
T  9305105 gaagaaaatggaataaaagaggtgaagtgatgaatgaaggtatttgtttaaggtaaaagcctatttatagcctaaaacaagtcctaggtcattaatacag 9305006  T
Q  109 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctctgaatctttccg 172  Q
    |||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||    
T  9305005 tcaatgaaaacgtgttagtggttgtaaccgtcaaaacccacaataatggctctgaatctttccg 9304942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 9 - 169
Target Start/End: Original strand, 439017 - 439180
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||||||||||| |||||| ||||||||||||||||| | |||||||||||||  |||||||||||||||||||||||||| |||||| || ||    
T  439017 gaagaaaatgtaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatggaagtctatttatagcctaaaacaagtcctaggtcattagtatag 439116  T
Q  109 tcaatgaaaacgtgttagtg---gttgtaaccgtccaaacccatattaatggctctgaatcttt 169  Q
    |||| |||||||||||||||   |||||||||||||||||||| ||||||| || |||||||||    
T  439117 tcaacgaaaacgtgttagtggttgttgtaaccgtccaaacccacattaatgactttgaatcttt 439180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 9 - 172
Target Start/End: Original strand, 16395301 - 16395467
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||| ||||||| |||||| |||||||||||| |||| | |||| ||||||||| |||||||||||||||||||||||||  ||||||||| ||    
T  16395301 gaagaaaatggaagaaaagaggtgaagtgaagaatgaaagtatttgttgacgatggaagcctatttatagcctaaaacaagtcctatgtcattaatatag 16395400  T
Q  109 tcaatgaaaacgtgttagtg---gttgtaaccgtccaaacccatattaatggctctgaatctttccg 172  Q
    ||||||||||||||||||||   ||||||||| |||||||||| |||||||||| ||||| ||||||    
T  16395401 tcaatgaaaacgtgttagtggttgttgtaaccatccaaacccacattaatggctttgaatatttccg 16395467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 9 - 170
Target Start/End: Original strand, 303740 - 303904
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||| ||||||| |||||| ||||||||||||||||| | ||||| |||||||| |||||||||||||||||||||||||| |||||||||||     
T  303740 gaagaaaatggaagaaaagaggtgaagtgaagaatgaaggtatttgttgaaaatggaagcctatttatagcctaaaacaagtcctaggtcattaatacaa 303839  T
Q  109 tcaatgaaaacgtgttagtggttg---taaccgtccaaacccatattaatggctctgaatctttc 170  Q
    |||||||||||||||| |||||||   |||||||||||||  | ||||||| |||||||| ||||    
T  303840 tcaatgaaaacgtgttggtggttgttataaccgtccaaacttacattaatgactctgaatgtttc 303904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 9 - 144
Target Start/End: Original strand, 20818518 - 20818653
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||||||||||| |||||| || ||||||||||| || | |||||||||||||  ||||||||| |||||| ||||| ||  |||| | ||||     
T  20818518 gaagaaaatgtaagaaaagaggtgaagtaaagaatgaaggaatttgttgaagatggaagtatatttatagtctaaaataagtcatacgtcataagtacaa 20818617  T
Q  109 tcaatgaaaacgtgttagtggttgtaaccgtccaaa 144  Q
    |||||||||||||||| |||||  ||||||||||||    
T  20818618 tcaatgaaaacgtgtttgtggtgctaaccgtccaaa 20818653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 9 - 112
Target Start/End: Original strand, 17519839 - 17519942
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||| ||||| ||| || ||| |||||||||| ||| || ||||||| ||| || | |||||||||||||||||||||| |||||||| | |||||    
T  17519839 gaagaaaaagtaaggaaagagatgaagtgaagaatggaggaatttcttgaacatgcaaacatatttatagcctaaaacaagtcatagatcataactacag 17519938  T
Q  109 tcaa 112  Q
    ||||    
T  17519939 tcaa 17519942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 112
Target Start/End: Complemental strand, 6837350 - 6837248
Alignment:
Q  10 aagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacagt 109  Q
    ||||||||||||||||| |||||| |||||||||||||| |  | ||||||||  |  | ||||||||| || |||  ||||||||||||| | ||||||    
T  6837350 aagaaaatgtaagaaaagaggtgaagtgaagaatgaaggaaattattgaagatccagccctatttatagtcttaaatcagtcctagatcataactacagt 6837251  T
Q  110 caa 112  Q
    |||    
T  6837250 caa 6837248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1301 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: scaffold1301
Description:

Target: scaffold1301; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 9 - 172
Target Start/End: Original strand, 1641 - 1804
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||| | ||||| ||||||  |||||||||||||||| | |||||| ||||||| ||||||||| |||||||||| | ||  ||||||||||||    
T  1641 gaagaaaatggaggaaaataggtgaactgaagaatgaaggtatttgttgaagttggaagcctatttatagtctaaaacaagccttaagtcattaatacag 1740  T
Q  109 tcaatgaaaacgtgttagtggttgtaaccgtccaaacccatattaatggctctgaatctttccg 172  Q
    |||| ||||||  ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  1741 tcaacgaaaacaagttagtggttgtaaccgtccaaacccacattaatggctctgaatctttccg 1804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 9 - 116
Target Start/End: Complemental strand, 19174 - 19067
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacag 108  Q
    |||||||||||||||||| || ||| |||||||||||||| || | |||||||||  ||| |||||||||||||||||||||| ||| |||| | |||||    
T  19174 gaagaaaatgtaagaaaagagttgaagtgaagaatgaaggaatttgttgaagatgagagcctatttatagcctaaaacaagtcttaggtcataagtacag 19075  T
Q  109 tcaatgaa 116  Q
    ||||||||    
T  19074 tcaatgaa 19067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 4 - 100
Target Start/End: Complemental strand, 17397 - 17301
Alignment:
Q  4 atgtcgaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcat 100  Q
    |||| |||||||| ||||||||| |||||| |||||||||||| | || | ||||||||  || | |||||||||||||||||||||||||||||||    
T  17397 atgttgaagaaaaagtaagaaaataggtgaagtgaagaatgaaagaatttgttgaagatacaaacctatttatagcctaaaacaagtcctagatcat 17301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 100
Target Start/End: Original strand, 51827 - 51916
Alignment:
Q  9 gaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcat 100  Q
    |||||||| ||||||||| |||||| || ||||||||||| || |  |||||||| || | |||||||||||||||||||||||||||||||    
T  51827 gaagaaaaagtaagaaaagaggtgaagttaagaatgaaggaatgt--tgaagatgcaaacctatttatagcctaaaacaagtcctagatcat 51916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 112
Target Start/End: Complemental strand, 8267 - 8159
Alignment:
Q  4 atgtcgaagaaaatgtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaa 103  Q
    |||| |||| ||||||||||||| |||||| |||||||||||||| |  | || |||||  |||| || ||||||||| |||| ||||||||||||| ||    
T  8267 atgttgaagtaaatgtaagaaaagaggtgaagtgaagaatgaaggaaattgttaaagatccaagcctagttatagccttaaaccagtcctagatcataaa 8168  T
Q  104 tacagtcaa 112  Q
    |||| ||||    
T  8167 tacaatcaa 8159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 427326 - 427220
Alignment:
Q  18 gtaagaaaaaaggtgatgtgaagaatgaaggtatatcttgaagatggaagcttatttatagcctaaaacaagtcctagatcattaatacagtcaatgaaa 117  Q
    |||| |||| |||||| |||||||||||||| |  | ||||||||| |||| |||||||||||| | || | ||||||||||| | | |||||||  |||    
T  427326 gtaacaaaagaggtgaagtgaagaatgaaggaaattgttgaagatgcaagcctatttatagccttagaccattcctagatcataagtgcagtcaaataaa 427227  T
Q  118 acgtgtt 124  Q
    |||||||    
T  427226 acgtgtt 427220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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