View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18283_low_2 (Length: 516)
Name: NF18283_low_2
Description: NF18283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18283_low_2 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 405; Significance: 0; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 12 - 498
Target Start/End: Complemental strand, 21432939 - 21432457
Alignment:
| Q |
12 |
cagcacagatggggaaatgcatcaagtaaaacttctataaaatggtgcattggttggcacataccttctagagaatctgtacaggtttttaaatgcattt |
111 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21432939 |
cagcacagatggggaaatgcattaagtaaaacttctataaaatggtgcattggttggcacataccttctagagaatctgtacaggtttttaaatgcattt |
21432840 |
T |
|
| Q |
112 |
cttctgggctcaaacgatgaagagaagtggtatttagcagtgtgtgatctaagtccagaaccaagcaaagctttctacagtttaataaattccgtgtgtg |
211 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
21432839 |
cttctgggctcaaacgatgaagggaagtggtatttagcagtgtgtgatctaagtccagaaccaagcaaagctttctacggtttaataaattccgtgtgtg |
21432740 |
T |
|
| Q |
212 |
taagctgcgcactctagaaatttcctcctcctgaagtcttagtccctgagcatacaaaaatctccatatttaaatcatgtagaatagttgggttgtgtgt |
311 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
21432739 |
taagcttcgcactctagaaatttcctcctcatgaagtcttagtccctgagcatacaaaaatctccatatttaaatcatgtagaatagttggattgtgtgt |
21432640 |
T |
|
| Q |
312 |
atgataggatacaacaagagttcaaaggagaaaagnnnnnnnncgaataaaaataggatttatagtgatatttgcaacacctgagagcaaaatcgataca |
411 |
Q |
| |
|
||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21432639 |
atgataggatacaac--gagttcaaaggagaagaaaaaaaaaacgaataaaaataggatttatagtgatatttgcaacacctgagagcaaaatcgataca |
21432542 |
T |
|
| Q |
412 |
atagggttaaatttgcaagttcccaatatactctcccaagaatgatacaatagtgctaatttctagagtgttccaattctgacttac |
498 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
21432541 |
atagggttaaatttgcaagttccca--atactctcccaagaatgatacaatagtgctaagttctagagtgttccaattctgacttac |
21432457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 51 - 496
Target Start/End: Original strand, 27099529 - 27099958
Alignment:
| Q |
51 |
aaatggtgcattggttggcacataccttctagagaatctgtacaggtttttaaatgcatttcttctgggctcaaacgatgaagagaagtggtatttagca |
150 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| ||||||| || |||||||||| |||| ||||| ||||||| ||||||||||||| | |
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|
| T |
27099529 |
aaatggtgcattagttggcacataccttctagagaatctgtataggttttcaattgcatttcttttgggttcaaaggatgaagggaagtggtatttatct |
27099628 |
T |
|
| Q |
151 |
gtgtgtgatctaagtccagaaccaagcaaagctttctacagtttaataaattccgtgtgtgtaagctgcgcactctagaaatttcctcctcctgaagtct |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
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|
| T |
27099629 |
gtgtgtgatctaagtccagaaccaagcaaagctttctacggtttaataaattccgtgtgtgtaagctgcgcactctagaaatttcctcatcatgaagtct |
27099728 |
T |
|
| Q |
251 |
tagtccctgagcatacaaaaatctccatatttaaatcatgtagaatagttgggttgtgtgtatgataggatacaacaagagttcaaaggagaaaagnnnn |
350 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| | |
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|
| T |
27099729 |
tagtccctgaacatatgaaaatctccatatttaaatcatgtagaatagttggattgtgtgtatgataggatacaacaagcgttcaaaggagaaga-taaa |
27099827 |
T |
|
| Q |
351 |
nnnncgaataaaaataggatttatagtgatatttgcaacacctgagagcaaaatcgatacaatagggttaaatttgcaagttcccaatatactctcccaa |
450 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||| | | |||||||| |
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|
| T |
27099828 |
aaattgaataaaaataggatttatagtgatatttgcaagacctgagagcaaaatcaatacaatagg-------------tttccca--agaatctcccaa |
27099912 |
T |
|
| Q |
451 |
gaatgatacaatagtgctaatttctagagtgttccaattctgactt |
496 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||| ||||||||||||| |
|
|
| T |
27099913 |
gaatgatacaatagggctaaattctagagtgtcccaattctgactt |
27099958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 13 - 322
Target Start/End: Complemental strand, 27151751 - 27151439
Alignment:
| Q |
13 |
agcacagatggggaaatgcatcaagtaaaacttctataaaatggtgcattggttggcacataccttctagagaatctgtacaggtttttaaatgcatttc |
112 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||||||||||||||| | ||||| |||| |||||||||||||||| || |||||||||||||||| |
|
|
| T |
27151751 |
agcagagatggggaaatgcatcaagtaaaacttttataaaatggtgcattcggtggcatatactttctagagaatctgtatagatttttaaatgcatttc |
27151652 |
T |
|
| Q |
113 |
ttctggg-ctcaaacgatgaagagaagtggtatttagcagtgtgtgatctaagtccagaa---ccaagcaaagctttctacagtttaataaattccgtgt |
208 |
Q |
| |
|
||||||| |||||| ||||||| | |||||||||||||||||||||||||| | |||||| ||||||||||||||||| ||||| ||||||| |||| |
|
|
| T |
27151651 |
ttctggggctcaaatgatgaaggggagtggtatttagcagtgtgtgatctaggcccagaataaccaagcaaagctttctatggttta-taaattctgtgt |
27151553 |
T |
|
| Q |
209 |
gtgtaagctgcgcactctagaaatttcctcctcctgaagtcttagtccctgagcatacaaaaatctccatatttaaatcatgtagaatagttgggttgtg |
308 |
Q |
| |
|
|| |||||||| ||||||| |||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
27151552 |
gtctaagctgcacactctacaaatttcctcatcgtgaagtcttagtccctgaacatacaaaaatctccatatttaaatcatgtagaatagttggattgtg |
27151453 |
T |
|
| Q |
309 |
tgtatgataggata |
322 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
27151452 |
tgtatgataggata |
27151439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 55 - 284
Target Start/End: Complemental strand, 26988829 - 26988599
Alignment:
| Q |
55 |
ggtgcattggttggcacat-accttctagagaatctgtacaggtttttaaatgcatttcttctgggctcaaacgatgaagagaagtggtatttagcagtg |
153 |
Q |
| |
|
||||||| |||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
26988829 |
ggtgcatcggttggcatattaccttctagagaatctgtatgggtttttaaatgcatttcttctgggctcaaacgatgaagggaagtggtatttagcagtg |
26988730 |
T |
|
| Q |
154 |
tgtgatctaagtccagaaccaagcaaagctttctacagtttaataaattccgtgtgtgtaagctgcgcactctagaaatttcctcctcctgaagtcttag |
253 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |||||||||||| || | ||||||||||||||||||||||| || | |||| |||| |
|
|
| T |
26988729 |
tgtgatctaagtctagaaccaagcaaagctttctacgatttaataaattcttcacgtctctgctgcgcactctagaaatttccttatcatcaagttttag |
26988630 |
T |
|
| Q |
254 |
tccctgagcatacaaaaatctccatatttaa |
284 |
Q |
| |
|
||||||| ||||||||||| ||||||||||| |
|
|
| T |
26988629 |
tccctgaacatacaaaaatttccatatttaa |
26988599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 73 - 339
Target Start/End: Original strand, 27076449 - 27076727
Alignment:
| Q |
73 |
taccttctagagaatctgtacaggtttttaaatgcatttcttctgggctcaaacgatgaagagaagtggtatttagcagtgtgtgatctaagtccagaac |
172 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
27076449 |
taccttctagagaatctgtatgagtttttaaatgcatttcttctgggctcaaacgatgaagggaagtggtatttagcagtgtgtgatctaggtctagaac |
27076548 |
T |
|
| Q |
173 |
caagcaaagctttctacagtttaataaattccgtgtgtgtaagctgcgcactctagaaatttcctcctcctgaagtcttagtccctgagcatacaaaaat |
272 |
Q |
| |
|
||| ||||||||||||| |||||||||||| || || || |||||||||||||||||||| || | |||| ||||||||||| | |||||||| |
|
|
| T |
27076549 |
caaacaaagctttctacgatttaataaattcttcacgtctatgccgcgcactctagaaatttccttatcatcaagttttagtccctgaaaacacaaaaat |
27076648 |
T |
|
| Q |
273 |
ctccatatt--------taaatcatgtag----aatagttgggttgtgtgtatgataggatacaacaagagttcaaagg |
339 |
Q |
| |
|
||||||||| ||||| ||| || |||| |||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
27076649 |
ctccatatttatttggctaaattatgcagaataaataattgggttgtgtgtatgataggatacaacaagaattcaaagg |
27076727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 73 - 284
Target Start/End: Complemental strand, 27028128 - 27027917
Alignment:
| Q |
73 |
taccttctagagaatctgtacaggtttttaaatgcatttcttctgggctcaaacgatgaagagaagtggtatttagcagtgtgtgatctaagtccagaac |
172 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||| | |||| ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
27028128 |
taccttctagagaatctgtatgggtttttaaatgcatttcttctgagctcaaacggtaaagaaaagtggtatttagcagtgtgtgatctaggtccagaac |
27028029 |
T |
|
| Q |
173 |
caagcaaagctttctacagtttaataaattccgtgtgtgtaagctgcgcactctagaaatttcctcctcctgaagtcttagtccctgagcatacaaaaat |
272 |
Q |
| |
|
||| ||||||||||||| |||||||||||| || || | |||||||||||||||||||| || | |||| ||||||||||| |||||||||| |
|
|
| T |
27028028 |
caaacaaagctttctacgatttaataaattcttcacgtctatgtcgcgcactctagaaatttccttatcatcaagttttagtccctgaaaatacaaaaat |
27027929 |
T |
|
| Q |
273 |
ctccatatttaa |
284 |
Q |
| |
|
|||||||||||| |
|
|
| T |
27027928 |
ctccatatttaa |
27027917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 294 - 339
Target Start/End: Complemental strand, 27027884 - 27027839
Alignment:
| Q |
294 |
aatagttgggttgtgtgtatgataggatacaacaagagttcaaagg |
339 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
27027884 |
aatagttgggttgtgtgtatgataggatacaacaagaattcaaagg |
27027839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 294 - 339
Target Start/End: Complemental strand, 26988564 - 26988519
Alignment:
| Q |
294 |
aatagttgggttgtgtgtatgataggatacaacaagagttcaaagg |
339 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
26988564 |
aatagttgggttgtgtatatgataggatacaacaagaattcaaagg |
26988519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 404
Target Start/End: Complemental strand, 27151430 - 27151383
Alignment:
| Q |
357 |
aataaaaataggatttatagtgatatttgcaacacctgagagcaaaat |
404 |
Q |
| |
|
||||||||||||||||||||| |||||| ||| ||||||||| ||||| |
|
|
| T |
27151430 |
aataaaaataggatttatagtaatatttccaagacctgagagtaaaat |
27151383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 131; Significance: 1e-67; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 55 - 284
Target Start/End: Complemental strand, 34690905 - 34690675
Alignment:
| Q |
55 |
ggtgcattggttggcacat-accttctagagaatctgtacaggtttttaaatgcatttcttctgggctcaaacgatgaagagaagtggtatttagcagtg |
153 |
Q |
| |
|
||||||| |||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
34690905 |
ggtgcatcggttggcatattaccttctagagaatctgtatgggtttttaaatgcatttcttctgggctcaaacgatgaagggaagtggtatttagcagtg |
34690806 |
T |
|
| Q |
154 |
tgtgatctaagtccagaaccaagcaaagctttctacagtttaataaattccgtgtgtgtaagctgcgcactctagaaatttcctcctcctgaagtcttag |
253 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |||||||||||| || | ||||||||||||||||||||||| || | |||| |||| |
|
|
| T |
34690805 |
tgtgatctaagtcaagaaccaagcaaagctttctacgatttaataaattcttcacgtctctgctgcgcactctagaaatttccttatcatcaagttttag |
34690706 |
T |
|
| Q |
254 |
tccctgagcatacaaaaatctccatatttaa |
284 |
Q |
| |
|
||||||| ||||||||||| ||||||||||| |
|
|
| T |
34690705 |
tccctgaacatacaaaaatttccatatttaa |
34690675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 294 - 339
Target Start/End: Complemental strand, 34690640 - 34690595
Alignment:
| Q |
294 |
aatagttgggttgtgtgtatgataggatacaacaagagttcaaagg |
339 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
34690640 |
aatagttgggttgtgtatatgataggatacaacaagaattcaaagg |
34690595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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