View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18283_low_4 (Length: 452)
Name: NF18283_low_4
Description: NF18283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18283_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 245 - 441
Target Start/End: Complemental strand, 39454454 - 39454258
Alignment:
| Q |
245 |
acttgcagttggaggatagagccgaagtgtttcattaatgatcatactgacctgttcaaatatgcaaaccaaaaacaattactaggccaattaactcgat |
344 |
Q |
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| T |
39454454 |
acttgcagttggaggatagagccgaagtgtttcattaatgatcatactgacctgttcaaatatgcaaaccaaaaacaattactaggccaattaactcgat |
39454355 |
T |
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| Q |
345 |
caattgttttgttcgtttattgatgcacagcatatttcatacatactgcactattttttaatctaacaaatcaaatttttatgataattcatctcat |
441 |
Q |
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| T |
39454354 |
caattgttttgttcgtttattgatgcacagcatatttcatacatactgcactattttttaatctaacaaatcaaatttttatgataattcatctcat |
39454258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 16 - 162
Target Start/End: Complemental strand, 39454683 - 39454537
Alignment:
| Q |
16 |
tatttcactttcagttagttagtcactaattggttaaatgattcttgtaatttagtcattgcatacattctaattgtcttaggatagtagaaaatttatt |
115 |
Q |
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| T |
39454683 |
tatttcactttcagttagttagtcactaattggttaaatgattcttgtaatttagtcattgcatacattctaattgtcttaggatagtagaaaatttatt |
39454584 |
T |
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| Q |
116 |
ttgattaggttttatgcaagtagggaagaataggtttgtttgaaatg |
162 |
Q |
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| T |
39454583 |
ttgattaggttttatgcaagtaaggaagaataggtttgtttgaaatg |
39454537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 313
Target Start/End: Original strand, 39449095 - 39449153
Alignment:
| Q |
255 |
ggaggatagagccgaagtgtttcattaatgatcatactgacctgttcaaatatgcaaac |
313 |
Q |
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| T |
39449095 |
ggaggatagagtcgaagggtttcattaattatcatgctgacctgttggaatatgtaaac |
39449153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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