View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18283_low_5 (Length: 379)
Name: NF18283_low_5
Description: NF18283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18283_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 164 - 361
Target Start/End: Complemental strand, 14953054 - 14952857
Alignment:
| Q |
164 |
tccaatttttattatgacaaatgaataagggagacagaaaaatggaatttttgagaaaatgaacaaaagggtgatgagagaaaacgaaccaggccacatt |
263 |
Q |
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| T |
14953054 |
tccaatttttattatgacaaatgaataagggagacagaaaaatggaatttttgagaaaatgaacaaaagggtgatgagagaaaacgaaccaggccacatt |
14952955 |
T |
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| Q |
264 |
gggctaatttcagagaaccagccaggaataacagaagataaaccatttggttgagggtcttttggaacagtttcagagaaaccgttgtgaggtaattg |
361 |
Q |
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| T |
14952954 |
gggctaatttcagagaaccagccaggaataacagaagataaaccatttggttgagggtcttttggaacagtttcagagaaaccgttgtgaggtaattg |
14952857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 11 - 62
Target Start/End: Complemental strand, 14953207 - 14953156
Alignment:
| Q |
11 |
cacagagaattgatactttcatgatgacatacagtaataagattttatccaa |
62 |
Q |
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| T |
14953207 |
cacagagaattgatactttcatgatgacatacagtaataagattttatccaa |
14953156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 244 - 298
Target Start/End: Original strand, 26823089 - 26823143
Alignment:
| Q |
244 |
aaaacgaaccaggccacattgggctaatttcagagaaccagccaggaataacaga |
298 |
Q |
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| T |
26823089 |
aaaactaaccaggccacattgggctaatttcagaaaaccacccaggaatcacaga |
26823143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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