View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18283_low_6 (Length: 374)

Name: NF18283_low_6
Description: NF18283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18283_low_6
NF18283_low_6
[»] chr1 (16 HSPs)
chr1 (249-356)||(19456828-19456934)
chr1 (1-137)||(17242015-17242156)
chr1 (1-76)||(9010969-9011044)
chr1 (1-76)||(24302999-24303074)
chr1 (37-137)||(9008762-9008865)
chr1 (208-254)||(19456452-19456498)
chr1 (89-137)||(9011063-9011110)
chr1 (37-76)||(17240784-17240823)
chr1 (88-137)||(24304310-24304358)
chr1 (105-137)||(48030257-48030289)
chr1 (1-52)||(13970040-13970091)
chr1 (105-135)||(43402266-43402296)
chr1 (89-137)||(17240718-17240767)
chr1 (105-137)||(24302937-24302969)
chr1 (18-50)||(48030165-48030197)
chr1 (89-137)||(51676340-51676388)
[»] chr7 (6 HSPs)
chr7 (1-137)||(5737178-5737319)
chr7 (290-356)||(10197665-10197732)
chr7 (37-137)||(5769254-5769359)
chr7 (89-137)||(23525582-23525631)
chr7 (91-137)||(6591270-6591316)
chr7 (1-76)||(12629340-12629416)
[»] chr8 (9 HSPs)
chr8 (1-71)||(40463516-40463586)
chr8 (89-137)||(38973754-38973802)
chr8 (89-137)||(39004852-39004900)
chr8 (1-76)||(9310834-9310909)
chr8 (105-137)||(14099746-14099778)
chr8 (89-137)||(42480899-42480947)
chr8 (106-137)||(3917797-3917828)
chr8 (8-52)||(38973842-38973887)
chr8 (8-52)||(39004940-39004985)
[»] scaffold0262 (1 HSPs)
scaffold0262 (1-71)||(4294-4364)
[»] chr3 (7 HSPs)
chr3 (1-71)||(11150344-11150414)
chr3 (89-141)||(42277228-42277280)
chr3 (16-76)||(51832437-51832497)
chr3 (89-139)||(39605582-39605631)
chr3 (1-51)||(52043336-52043386)
chr3 (89-137)||(15438471-15438520)
chr3 (1-52)||(39605670-39605722)
[»] scaffold0268 (1 HSPs)
scaffold0268 (290-356)||(22356-22423)
[»] chr4 (6 HSPs)
chr4 (5-76)||(47862000-47862071)
chr4 (89-139)||(56083353-56083403)
chr4 (37-76)||(44355359-44355398)
chr4 (105-135)||(47861936-47861966)
chr4 (105-137)||(12861413-12861445)
chr4 (7-51)||(52706713-52706757)
[»] scaffold0049 (1 HSPs)
scaffold0049 (105-137)||(3943-3975)
[»] scaffold0484 (1 HSPs)
scaffold0484 (106-137)||(11537-11568)
[»] chr6 (4 HSPs)
chr6 (106-137)||(12603938-12603969)
chr6 (106-137)||(25483421-25483452)
chr6 (89-137)||(6624254-6624301)
chr6 (108-136)||(26545892-26545920)
[»] chr5 (3 HSPs)
chr5 (106-137)||(29875948-29875979)
chr5 (89-137)||(12316349-12316397)
chr5 (105-137)||(27491295-27491327)
[»] chr2 (1 HSPs)
chr2 (90-137)||(29042337-29042384)
[»] scaffold0071 (1 HSPs)
scaffold0071 (89-137)||(23671-23720)
[»] scaffold0197 (1 HSPs)
scaffold0197 (105-137)||(28784-28816)


Alignment Details
Target: chr1 (Bit Score: 78; Significance: 3e-36; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 249 - 356
Target Start/End: Original strand, 19456828 - 19456934
Alignment:
Q  249 tcacaacacttcaacctatcagaataatcacnnnnnnnctttcaatttcaatttcccaaaccaaacatgcctgcttttccagaagaaccccttcttgccc 348  Q
    ||||||||||||||||||||| |||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19456828 tcacaacacttcaacctatcaaaataatcactttttt-ctttcaatttcaatttcccaaaccaaacatgcctgcttttccagaagaaccccttcttgccc 19456926  T
Q  349 caaaccca 356  Q
    ||||||||    
T  19456927 caaaccca 19456934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 17242015 - 17242156
Alignment:
Q  1 tcatcacattaatctagtcagatggcttgggggtgtaaaccaaagaatcttctaatggtaagggggaatctacaag-nnnnnnnngaca---gggtatac 96  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||         ||||   ||||||||    
T  17242015 tcatcacattaatctagtcagatggtttgggggtgtaaaccaaagaatcttctaatggcaagggggaatctacaagtttttttttgacaggggggtatac 17242114  T
Q  97 caaaaagtccccaaatggca-gggggtaaaagcctattaacc 137  Q
    ||||||| |||||||||||| |||||||||||||||||||||    
T  17242115 caaaaagcccccaaatggcaggggggtaaaagcctattaacc 17242156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 9010969 - 9011044
Alignment:
Q  1 tcatcacattaatctagtcagatggcttgggggtgtaaaccaaagaatcttctaatggtaagggggaatctacaag 76  Q
    |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  9010969 tcatcacattaatccagtcagatggtttgggggtgtaaaccaaagaatcttctaatggcaaggggaaatctacaag 9011044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 24303074 - 24302999
Alignment:
Q  1 tcatcacattaatctagtcagatggcttgggggtgtaaaccaaagaatcttctaatggtaagggggaatctacaag 76  Q
    |||||||||||||| | |||||||||||| ||||||||| |||||||||||||||| | |||||||||||| ||||    
T  24303074 tcatcacattaatccattcagatggcttgagggtgtaaatcaaagaatcttctaattgcaagggggaatctccaag 24302999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 37 - 137
Target Start/End: Complemental strand, 9008865 - 9008762
Alignment:
Q  37 aaaccaaagaatcttctaatggtaagggggaatctacaagnnnnnnnn-gacaggg--tataccaaaaagtccccaaatggcagggggtaaaagcctatt 133  Q
    |||||||||||||||||||||| |||||||||||||||||         |||||||  ||||||||||   |||||||||||||||||||||||||||||    
T  9008865 aaaccaaagaatcttctaatggcaagggggaatctacaagtttttttttgacagggggtataccaaaagacccccaaatggcagggggtaaaagcctatt 9008766  T
Q  134 aacc 137  Q
    ||||    
T  9008765 aacc 9008762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 208 - 254
Target Start/End: Original strand, 19456452 - 19456498
Alignment:
Q  208 acactcattccgatttcaaaagtcaattaaacactaccacgtcacaa 254  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||    
T  19456452 acactcattccaatttcaaaagtcaattaaacactaccacgtcacaa 19456498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 89 - 137
Target Start/End: Original strand, 9011063 - 9011110
Alignment:
Q  89 gggtataccaaaaagtccccaaatggcagggggtaaaagcctattaacc 137  Q
    ||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  9011063 gggtataccaaaaag-ccccaaatggcagggggtaaaaacctattaacc 9011110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 76
Target Start/End: Complemental strand, 17240823 - 17240784
Alignment:
Q  37 aaaccaaagaatcttctaatggtaagggggaatctacaag 76  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  17240823 aaaccaaagaatcttctaatggcaagggggaatctacaag 17240784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 88 - 137
Target Start/End: Original strand, 24304310 - 24304358
Alignment:
Q  88 agggtataccaaaaagtccccaaatggcagggggtaaaagcctattaacc 137  Q
    |||||| |||||||| ||||||||||||||||||||||| ||||||||||    
T  24304310 agggtaaaccaaaaa-tccccaaatggcagggggtaaaaacctattaacc 24304358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 137
Target Start/End: Original strand, 48030257 - 48030289
Alignment:
Q  105 ccccaaatggcagggggtaaaagcctattaacc 137  Q
    |||||||||||||||||||||||||||||||||    
T  48030257 ccccaaatggcagggggtaaaagcctattaacc 48030289  T

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Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 13970091 - 13970040
Alignment:
Q  1 tcatcacattaatctagtcagatggcttgggggtgtaaaccaaagaatcttc 52  Q
    ||||| |||||||| ||||| |||| |||||||| |||||||||||||||||    
T  13970091 tcatctcattaatccagtcatatggtttgggggtataaaccaaagaatcttc 13970040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 135
Target Start/End: Complemental strand, 43402296 - 43402266
Alignment:
Q  105 ccccaaatggcagggggtaaaagcctattaa 135  Q
    |||||||||||||||||||||||||||||||    
T  43402296 ccccaaatggcagggggtaaaagcctattaa 43402266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 137
Target Start/End: Complemental strand, 17240767 - 17240718
Alignment:
Q  89 gggtataccaaaaagtccccaaatggcaggggg-taaaagcctattaacc 137  Q
    |||||||||||||   ||||||||||||||||| ||||||||||||||||    
T  17240767 gggtataccaaaagacccccaaatggcaggggggtaaaagcctattaacc 17240718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 137
Target Start/End: Complemental strand, 24302969 - 24302937
Alignment:
Q  105 ccccaaatggcagggggtaaaagcctattaacc 137  Q
    |||||||||||||||||||||| ||||||||||    
T  24302969 ccccaaatggcagggggtaaaatcctattaacc 24302937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 48030165 - 48030197
Alignment:
Q  18 tcagatggcttgggggtgtaaaccaaagaatct 50  Q
    ||||||||| |||||||||||||||||||||||    
T  48030165 tcagatggcctgggggtgtaaaccaaagaatct 48030197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 137
Target Start/End: Original strand, 51676340 - 51676388
Alignment:
Q  89 gggtataccaaaaagtccccaaatggcagggggtaaaagcctattaacc 137  Q
    |||||||||||||   |||||||| |||||||||||||| |||||||||    
T  51676340 gggtataccaaaagacccccaaatagcagggggtaaaagtctattaacc 51676388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 5e-35; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 5737319 - 5737178
Alignment:
Q  1 tcatcacattaatctagtcagatggcttgggggtgtaaaccaaagaatcttctaatggtaagggggaatctacaag-nnnnnnnngaca---gggtatac 96  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||         ||||   ||||||||    
T  5737319 tcatcacattaatctagtcagatggtttgggggtgtaaaccaaagaatcttctaatggcaagggggaatctacaagtttttttttgacaggggggtatac 5737220  T
Q  97 caaaaagtccccaaatggca-gggggtaaaagcctattaacc 137  Q
    ||||||| |||||||||||| |||||||||||||||||||||    
T  5737219 caaaaagcccccaaatggcaggggggtaaaagcctattaacc 5737178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 290 - 356
Target Start/End: Complemental strand, 10197732 - 10197665
Alignment:
Q  290 tcaatttcaatttcccaaa-ccaaacatgcctgcttttccagaagaaccccttcttgccccaaaccca 356  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||| || |||||||||    
T  10197732 tcaatttcaatttcctaaaaccaaacatgcctgcttttccagaagaaccacttctcgcaccaaaccca 10197665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 137
Target Start/End: Original strand, 5769254 - 5769359
Alignment:
Q  37 aaaccaaagaatcttctaatggtaagggggaatctacaagnnnnnnnn-gacaggg---tataccaaaaagtccccaaatggca-gggggtaaaagccta 131  Q
    |||||||||||||||||||||| |||||||||||||||||         |||||||   ||||||||||   |||||||||||| |||||||||||||||    
T  5769254 aaaccaaagaatcttctaatggcaagggggaatctacaagtttttttttgacaggggggtataccaaaagacccccaaatggcaggggggtaaaagccta 5769353  T
Q  132 ttaacc 137  Q
    ||||||    
T  5769354 ttaacc 5769359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 137
Target Start/End: Complemental strand, 23525631 - 23525582
Alignment:
Q  89 gggtataccaaaaagtccccaaatggcag-ggggtaaaagcctattaacc 137  Q
    ||||||||||||||  ||||||||||||| ||||||||||||||||||||    
T  23525631 gggtataccaaaaatcccccaaatggcagcggggtaaaagcctattaacc 23525582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 137
Target Start/End: Complemental strand, 6591316 - 6591270
Alignment:
Q  91 gtataccaaaaagtccccaaatggcagggggtaaaagcctattaacc 137  Q
    |||||||||||   | |||||||||||||||||||||||||||||||    
T  6591316 gtataccaaaataccaccaaatggcagggggtaaaagcctattaacc 6591270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 12629340 - 12629416
Alignment:
Q  1 tcatcacattaatctagtcagatggct-tgggggtgtaaaccaaagaatcttctaatggtaagggggaatctacaag 76  Q
    ||||| |||| ||| |||||||||||  | |||| ||||||||||||||||  |||||| |||||||||||| ||||    
T  12629340 tcatcccatttatccagtcagatggcgctaggggggtaaaccaaagaatctaataatggcaagggggaatcttcaag 12629416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 40463516 - 40463586
Alignment:
Q  1 tcatcacattaatctagtcagatggcttgggggtgtaaaccaaagaatcttctaatggtaagggggaatct 71  Q
    |||||| ||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  40463516 tcatcatattaatccaatcagatggcttgggggtgtaaatcaaagaatcttctaatggtaagggggaatct 40463586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 89 - 137
Target Start/End: Complemental strand, 38973802 - 38973754
Alignment:
Q  89 gggtataccaaaaagtccccaaatggcagggggtaaaagcctattaacc 137  Q
    ||||||||||||||  |||||||||||||||||||||| ||||||||||    
T  38973802 gggtataccaaaaaacccccaaatggcagggggtaaaaacctattaacc 38973754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 89 - 137
Target Start/End: Complemental strand, 39004900 - 39004852
Alignment:
Q  89 gggtataccaaaaagtccccaaatggcagggggtaaaagcctattaacc 137  Q
    ||||||||||||||  |||||||||||||||||||||| ||||||||||    
T  39004900 gggtataccaaaaaacccccaaatggcagggggtaaaaacctattaacc 39004852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 9310834 - 9310909
Alignment:
Q  1 tcatcacattaatctagtcagatggcttgggggtgtaaaccaaagaatcttctaatggtaagggggaatctacaag 76  Q
    ||||| |||||||| | ||| || |||||||||||| ||||| |||||||||| |||| |||||||||||| ||||    
T  9310834 tcatctcattaatccattcatatagcttgggggtgtgaaccagagaatcttctcatggcaagggggaatctccaag 9310909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 137
Target Start/End: Complemental strand, 14099778 - 14099746
Alignment:
Q  105 ccccaaatggcagggggtaaaagcctattaacc 137  Q
    |||||||||||||||||||||||||||||||||    
T  14099778 ccccaaatggcagggggtaaaagcctattaacc 14099746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 137
Target Start/End: Complemental strand, 42480947 - 42480899
Alignment:
Q  89 gggtataccaaaaagtccccaaatggcagggggtaaaagcctattaacc 137  Q
    ||||| ||||||||  ||| |||||||||||||||||||||||||||||    
T  42480947 gggtaaaccaaaaaacccctaaatggcagggggtaaaagcctattaacc 42480899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 106 - 137
Target Start/End: Complemental strand, 3917828 - 3917797
Alignment:
Q  106 cccaaatggcagggggtaaaagcctattaacc 137  Q
    ||||||||||||||||||||||||||||||||    
T  3917828 cccaaatggcagggggtaaaagcctattaacc 3917797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 38973887 - 38973842
Alignment:
Q  8 attaatctagtcagatggcttggggg-tgtaaaccaaagaatcttc 52  Q
    ||||||||||||| |||| ||||||| |||||||||||||||||||    
T  38973887 attaatctagtcatatggtttggggggtgtaaaccaaagaatcttc 38973842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 39004985 - 39004940
Alignment:
Q  8 attaatctagtcagatggcttggggg-tgtaaaccaaagaatcttc 52  Q
    ||||||||||||| |||| ||||||| |||||||||||||||||||    
T  39004985 attaatctagtcatatggtttggggggtgtaaaccaaagaatcttc 39004940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 4294 - 4364
Alignment:
Q  1 tcatcacattaatctagtcagatggcttgggggtgtaaaccaaagaatcttctaatggtaagggggaatct 71  Q
    |||||| ||||||| | ||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||    
T  4294 tcatcatattaatccaatcagatggcttgggggtgtaaaccaaataatcttctaatggcaagagggaatct 4364  T

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Target: chr3 (Bit Score: 47; Significance: 9e-18; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 11150414 - 11150344
Alignment:
Q  1 tcatcacattaatctagtcagatggcttgggggtgtaaaccaaagaatcttctaatggtaagggggaatct 71  Q
    |||||||||||||| | ||||||| |||||||||||||||||| |||||||||||||| ||||||| ||||    
T  11150414 tcatcacattaatccaatcagatgacttgggggtgtaaaccaaggaatcttctaatggcaaggggggatct 11150344  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 89 - 141
Target Start/End: Complemental strand, 42277280 - 42277228
Alignment:
Q  89 gggtataccaaaaagtccccaaatggcagggggtaaaagcctattaaccataa 141  Q
    ||||||||||||||   ||||||||||||||||||||||||||||||||||||    
T  42277280 gggtataccaaaaaaaacccaaatggcagggggtaaaagcctattaaccataa 42277228  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 16 - 76
Target Start/End: Original strand, 51832437 - 51832497
Alignment:
Q  16 agtcagatggcttgggggtgtaaaccaaagaatcttctaatggtaagggggaatctacaag 76  Q
    ||||| ||||||||||||||| ||| ||||||||||||||||  ||||| |||||||||||    
T  51832437 agtcatatggcttgggggtgttaactaaagaatcttctaatgacaagggagaatctacaag 51832497  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 139
Target Start/End: Complemental strand, 39605631 - 39605582
Alignment:
Q  89 gggtataccaaaaagtccccaaatggcagggggtaaaagcctattaaccat 139  Q
    ||||| ||||||||  |||||||||||||||| ||||||||||||||||||    
T  39605631 gggtacaccaaaaaacccccaaatggcagggg-taaaagcctattaaccat 39605582  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 52043336 - 52043386
Alignment:
Q  1 tcatcacattaatctagtcagatggcttgggggtgtaaaccaaagaatctt 51  Q
    ||||| |||| ||| ||||||||| ||||||||||||||||||| ||||||    
T  52043336 tcatctcattgatccagtcagatgacttgggggtgtaaaccaaataatctt 52043386  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 137
Target Start/End: Complemental strand, 15438520 - 15438471
Alignment:
Q  89 gggtataccaaaaagtccccaaatggcaggggg-taaaagcctattaacc 137  Q
    ||||||||||||||  || |||||||||||||| ||||||||||||||||    
T  15438520 gggtataccaaaaaaccctcaaatggcaggggggtaaaagcctattaacc 15438471  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 39605722 - 39605670
Alignment:
Q  1 tcatcacattaatctagtcagatggcttggggg-tgtaaaccaaagaatcttc 52  Q
    ||||| |||||||| ||||| |||| ||||||| |||||||||||||||||||    
T  39605722 tcatcccattaatccagtcatatggtttggggggtgtaaaccaaagaatcttc 39605670  T

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Target: scaffold0268 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0268
Description:

Target: scaffold0268; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 290 - 356
Target Start/End: Original strand, 22356 - 22423
Alignment:
Q  290 tcaatttcaatttcccaaa-ccaaacatgcctgcttttccagaagaaccccttcttgccccaaaccca 356  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||| || |||||||||    
T  22356 tcaatttcaatttcctaaaaccaaacatgcctgcttttccagaagaaccacttctcgcaccaaaccca 22423  T

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Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 5 - 76
Target Start/End: Complemental strand, 47862071 - 47862000
Alignment:
Q  5 cacattaatctagtcagatggcttgggggtgtaaaccaaagaatcttctaatggtaagggggaatctacaag 76  Q
    |||||||||| | |||||||| |||| ||||||||||||||||||||||||||| ||||||| |||| ||||    
T  47862071 cacattaatccaatcagatggtttggaggtgtaaaccaaagaatcttctaatggcaaggggggatctccaag 47862000  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 89 - 139
Target Start/End: Complemental strand, 56083403 - 56083353
Alignment:
Q  89 gggtataccaaaaagtccccaaatggcagggggtaaaagcctattaaccat 139  Q
    |||||||||||||   |||||||||||||||||||||||||||||||||||    
T  56083403 gggtataccaaaagacccccaaatggcagggggtaaaagcctattaaccat 56083353  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 37 - 76
Target Start/End: Original strand, 44355359 - 44355398
Alignment:
Q  37 aaaccaaagaatcttctaatggtaagggggaatctacaag 76  Q
    |||||||||||||||||||| | |||||||||||||||||    
T  44355359 aaaccaaagaatcttctaatagcaagggggaatctacaag 44355398  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 135
Target Start/End: Complemental strand, 47861966 - 47861936
Alignment:
Q  105 ccccaaatggcagggggtaaaagcctattaa 135  Q
    |||||||||||||||||||||||||||||||    
T  47861966 ccccaaatggcagggggtaaaagcctattaa 47861936  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 137
Target Start/End: Complemental strand, 12861445 - 12861413
Alignment:
Q  105 ccccaaatggcagggggtaaaagcctattaacc 137  Q
    |||||||| ||||||||||||||||||||||||    
T  12861445 ccccaaatagcagggggtaaaagcctattaacc 12861413  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 52706713 - 52706757
Alignment:
Q  7 cattaatctagtcagatggcttgggggtgtaaaccaaagaatctt 51  Q
    |||| ||| ||||||||||||||| ||||||||||||| ||||||    
T  52706713 cattgatccagtcagatggcttggaggtgtaaaccaaataatctt 52706757  T

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Target: scaffold0049 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 137
Target Start/End: Original strand, 3943 - 3975
Alignment:
Q  105 ccccaaatggcagggggtaaaagcctattaacc 137  Q
    |||||||||||||||||||||||||||||||||    
T  3943 ccccaaatggcagggggtaaaagcctattaacc 3975  T

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Target: scaffold0484 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0484
Description:

Target: scaffold0484; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 106 - 137
Target Start/End: Complemental strand, 11568 - 11537
Alignment:
Q  106 cccaaatggcagggggtaaaagcctattaacc 137  Q
    ||||||||||||||||||||||||||||||||    
T  11568 cccaaatggcagggggtaaaagcctattaacc 11537  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 106 - 137
Target Start/End: Complemental strand, 12603969 - 12603938
Alignment:
Q  106 cccaaatggcagggggtaaaagcctattaacc 137  Q
    ||||||||||||||||||||||||||||||||    
T  12603969 cccaaatggcagggggtaaaagcctattaacc 12603938  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 106 - 137
Target Start/End: Original strand, 25483421 - 25483452
Alignment:
Q  106 cccaaatggcagggggtaaaagcctattaacc 137  Q
    ||||||||||||||||||||||||||||||||    
T  25483421 cccaaatggcagggggtaaaagcctattaacc 25483452  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 137
Target Start/End: Complemental strand, 6624301 - 6624254
Alignment:
Q  89 gggtataccaaaaagtccccaaatggcagggggtaaaagcctattaacc 137  Q
    ||||||||||||| | |||||||||||| ||||||||| ||||||||||    
T  6624301 gggtataccaaaa-gaccccaaatggcaaggggtaaaaacctattaacc 6624254  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 108 - 136
Target Start/End: Original strand, 26545892 - 26545920
Alignment:
Q  108 caaatggcagggggtaaaagcctattaac 136  Q
    |||||||||||||||||||||||||||||    
T  26545892 caaatggcagggggtaaaagcctattaac 26545920  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 106 - 137
Target Start/End: Complemental strand, 29875979 - 29875948
Alignment:
Q  106 cccaaatggcagggggtaaaagcctattaacc 137  Q
    ||||||||||||||||||||||||||||||||    
T  29875979 cccaaatggcagggggtaaaagcctattaacc 29875948  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 137
Target Start/End: Complemental strand, 12316397 - 12316349
Alignment:
Q  89 gggtataccaaaaagtccccaaatggcagggggtaaaagcctattaacc 137  Q
    |||||||||||||   | ||||||||||||| |||||||||||||||||    
T  12316397 gggtataccaaaagacctccaaatggcagggagtaaaagcctattaacc 12316349  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 137
Target Start/End: Original strand, 27491295 - 27491327
Alignment:
Q  105 ccccaaatggcagggggtaaaagcctattaacc 137  Q
    |||||||| ||||||||||||||||||||||||    
T  27491295 ccccaaattgcagggggtaaaagcctattaacc 27491327  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 90 - 137
Target Start/End: Complemental strand, 29042384 - 29042337
Alignment:
Q  90 ggtataccaaaaagtccccaaatggcagggggtaaaagcctattaacc 137  Q
    ||||||||||||   |||||||| ||||||||||||||||||||||||    
T  29042384 ggtataccaaaagacccccaaatagcagggggtaaaagcctattaacc 29042337  T

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Target: scaffold0071 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 137
Target Start/End: Original strand, 23671 - 23720
Alignment:
Q  89 gggtataccaaaaagtccccaaatggca-gggggtaaaagcctattaacc 137  Q
    ||||||||||||||  || ||||||||| |||||||||||||||||||||    
T  23671 gggtataccaaaaaaccctcaaatggcaggggggtaaaagcctattaacc 23720  T

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Target: scaffold0197 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 137
Target Start/End: Complemental strand, 28816 - 28784
Alignment:
Q  105 ccccaaatggcagggggtaaaagcctattaacc 137  Q
    ||||||||||||||||||||||||| |||||||    
T  28816 ccccaaatggcagggggtaaaagccaattaacc 28784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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