View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18283_low_9 (Length: 326)
Name: NF18283_low_9
Description: NF18283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18283_low_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 305; Significance: 1e-172; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 6 - 314
Target Start/End: Original strand, 31099774 - 31100082
Alignment:
| Q |
6 |
aggaattgaaacaagcaaaacaccacttaaatctgaagatgatgaaccttggaatcctagtaagcccttacccgaaggctttgtaccttggcttgagcat |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
31099774 |
aggaattgaaacaagcaaaacaccacttaaatctgaagatgatgaaccttggaatcctagtaagcccttacctgaaggctttgtaccttggcttgagcat |
31099873 |
T |
|
| Q |
106 |
gatcatgataagtgtattgcagaacaattgggaatcgaccttgatgctccgataccagcggagtgtaagctgacctcacttgttcttcagtatttgatgt |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31099874 |
gatcatgataagtgtattgcagaacaattgggaatcgaccttgatgctccgataccagcggagtgtaagctgacctcacttgttcttcagtatttgatgt |
31099973 |
T |
|
| Q |
206 |
atatgttatataatattaattaatgtatgctgtgaatatcaacctctgatatcttcttctgaagttcactgtgtgtatattatattggcattcaaatacc |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31099974 |
atatgttatataatattaattaatgtatgctgtgaatatcaacctctgatatcttcttctgaagttcactgtgtgtatattatattggcattcaaatacc |
31100073 |
T |
|
| Q |
306 |
atctttttg |
314 |
Q |
| |
|
||||||||| |
|
|
| T |
31100074 |
atctttttg |
31100082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 6 - 314
Target Start/End: Complemental strand, 31141577 - 31141269
Alignment:
| Q |
6 |
aggaattgaaacaagcaaaacaccacttaaatctgaagatgatgaaccttggaatcctagtaagcccttacccgaaggctttgtaccttggcttgagcat |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
31141577 |
aggaattgaaacaagcaaaacaccacttaaatctgaagatgatgaaccttggaatcctagtaagcccttacctgaaggctttgtaccttggcttgagcat |
31141478 |
T |
|
| Q |
106 |
gatcatgataagtgtattgcagaacaattgggaatcgaccttgatgctccgataccagcggagtgtaagctgacctcacttgttcttcagtatttgatgt |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31141477 |
gatcatgataagtgtattgcagaacaattgggaatcgaccttgatgctccgataccagcggagtgtaagctgacctcacttgttcttcagtatttgatgt |
31141378 |
T |
|
| Q |
206 |
atatgttatataatattaattaatgtatgctgtgaatatcaacctctgatatcttcttctgaagttcactgtgtgtatattatattggcattcaaatacc |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31141377 |
atatgttatataatattaattaatgtatgctgtgaatatcaacctctgatatcttcttctgaagttcactgtgtgtatattatattggcattcaaatacc |
31141278 |
T |
|
| Q |
306 |
atctttttg |
314 |
Q |
| |
|
||||||||| |
|
|
| T |
31141277 |
atctttttg |
31141269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University