View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18284_high_18 (Length: 229)
Name: NF18284_high_18
Description: NF18284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18284_high_18 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 13 - 214
Target Start/End: Original strand, 34975707 - 34975908
Alignment:
| Q |
13 |
catcatgacctttcttaaagaagacagtcccatcttgcagctttccggtaagtttcactgaatcaatggaaataattcatctattcaatactacaatcca |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34975707 |
catcatgacctttcttaaagaagacagtcccatcttgcagctttccggtaagtttcactgaatcaatggaaataattcatctattcaatactacaatcca |
34975806 |
T |
|
| Q |
113 |
atatataattacaaggaaacaaagaaagcacaaaaactttaaaaagtctatatcagcaaaactataccctgaaccacagctccatcatttggtcgttcat |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
34975807 |
atatataattacaaggaaacaaagaaagcacaaaaactttaaaaagtctatatcagcaaaactgtaccctgaaccacagctccatcatttggtcgttcat |
34975906 |
T |
|
| Q |
213 |
at |
214 |
Q |
| |
|
|| |
|
|
| T |
34975907 |
at |
34975908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University