View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18284_high_2 (Length: 532)
Name: NF18284_high_2
Description: NF18284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18284_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 17 - 513
Target Start/End: Original strand, 56492214 - 56492710
Alignment:
| Q |
17 |
gaaatgaaacaacaacataatatttgatttggtgtttggtttccatgctatgccatgccatgaatgcgatgaggggtgtaagtgttggtgtgtttccttg |
116 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56492214 |
gaaaagaaacaacaacataatatttgatttggtgtttggtttccatgctatgccatgccatgaatgcgatgaggggtgtaagtgttggtgtgtttccttg |
56492313 |
T |
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| Q |
117 |
taatgtaatgagagtgagaagatactgttcaagaattgatgatgatgatcatcatagtcatagtaatgggaggattaggaaaggtggggttgtggtgcga |
216 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56492314 |
taatgtaatgagagtgagaaaatactgttcaagaattgatgatgatcatcatcatagtcatagtaatgggaggattaggaaaggtggggttgtggtgcga |
56492413 |
T |
|
| Q |
217 |
aacagcagcaacaaagtagatgaaacagaaacagatgtaattgtgattgggagtggtattggtggactgagttgtgcagcactgttggcaagatatgaac |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56492414 |
aacagcagcaacaaagtagatgaaacagaaacagatgtaattgtgattgggagtggtattggtggactgagttgtgcagcactgttggcaagatatgaac |
56492513 |
T |
|
| Q |
317 |
aagatgttgtcgttttcgaaagccacgaccatgctggaggtgctgctcattcttttgatgtcaaaggctataagtttgattccggtccatcattattctc |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56492514 |
aagatgttgtcgttttcgaaagccacgaccatgctggaggtgctgctcattcttttgatgtcaaaggctataagtttgattccggtccatcattattctc |
56492613 |
T |
|
| Q |
417 |
tggtttgcagtcaagaggtccacaggctaaccctcttgctcaagttcttgatgctttgggagagtccgtcccctgcgctacttatgattcatggatg |
513 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56492614 |
tggtttgcagtcaagaggtccacaggctaaccctcttgctcaagttcttgatgctttgggagagtccgtcccctgcgctacttatgattcatggatg |
56492710 |
T |
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