View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18284_high_3 (Length: 478)

Name: NF18284_high_3
Description: NF18284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18284_high_3
NF18284_high_3
[»] chr8 (10 HSPs)
chr8 (11-462)||(31651318-31651769)
chr8 (237-443)||(31656112-31656317)
chr8 (237-378)||(31645987-31646125)
chr8 (238-439)||(31629739-31629944)
chr8 (355-418)||(34212304-34212367)
chr8 (29-135)||(31630079-31630185)
chr8 (29-154)||(31646167-31646292)
chr8 (25-152)||(31637332-31637459)
chr8 (237-359)||(31637089-31637211)
chr8 (29-122)||(31656437-31656530)
[»] chr7 (2 HSPs)
chr7 (355-418)||(12002516-12002579)
chr7 (355-418)||(21452366-21452429)
[»] chr6 (3 HSPs)
chr6 (355-418)||(12758851-12758914)
chr6 (355-418)||(32398136-32398199)
chr6 (355-418)||(14653888-14653951)
[»] chr3 (1 HSPs)
chr3 (355-418)||(4329334-4329397)
[»] chr2 (1 HSPs)
chr2 (355-418)||(20921100-20921163)
[»] chr5 (2 HSPs)
chr5 (30-83)||(9105454-9105507)
chr5 (291-359)||(9105723-9105791)


Alignment Details
Target: chr8 (Bit Score: 389; Significance: 0; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 11 - 462
Target Start/End: Complemental strand, 31651769 - 31651318
Alignment:
Q  11 gggagaaagaacacaacacacctacaggtataaaagtaaaatcagcaattcttctctcaatattcttcacaattctatcacttcctctcttaagaaaagc 110  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31651769 gggagaatgaacacaacacacctacaggtataaaagtaaaatcagcaattcttctctcaatattcttcacaattctatcacttcctctcttaagaaaagc 31651670  T
Q  111 tccagagcttgtccgttcactaaatacagaatgaatatgtaaacgcaagccttgcgatatatgaagtgccaatggtgaacgaaacaagagatttatatta 210  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31651669 tccagagcttgtccgttccctaaatacagaatgaatatgtaaacgcaaggcttgcgatatatgaagtgccaatggtgaacgaaacaagagatttatatta 31651570  T
Q  211 caaagtgaactcaaaggnnnnnnnnntctaacctgctgtccacaccatttcctgtttcctcgtcaataacagctgatttatgcatactaggctttgctat 310  Q
     | | ||||||||||||         ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  31651569 aacactgaactcaaaggaaaaaaatatctaaccggctgtccacaccatttcctgtttcctcgtcaataacagccgatttatgcatactaggctttgctat 31651470  T
Q  311 attgattagatgttcacattcctcttttgtctgctcagatcaatcagcttagccttagcatttaggaaatggaaatttgtaacattaaaactatatttag 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31651469 attgattagatgttcacattcctcttttgtctgctcagatcaatcagcttagccttagcatttaggaaatggaaatttgtaacattaaaactatatttag 31651370  T
Q  411 gggattaaccctgaactataattaaacaatataagcatataatgttaaaact 462  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  31651369 gggattaaccctgaactataattaaacagtataagcatataatgttaaaact 31651318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 237 - 443
Target Start/End: Complemental strand, 31656317 - 31656112
Alignment:
Q  237 tctaacctgctgtccacaccatttcctgtttcctcgtcaataacagctgatttatgcatactaggctttgctatattgattagatgttcacattcctctt 336  Q
    ||||||||||||| || ||  |||||||||| ||||||||||||  | ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  31656317 tctaacctgctgttcagactctttcctgttttctcgtcaataacttccgatttatgcatactaggctttgctatattgattagatgttcgcattcctctt 31656218  T
Q  337 ttgtctgctcagatcaatcagcttagccttagcatttaggaaatggaaatttgtaacattaaaactatatttaggggattaaccctgaactataattaaa 436  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||  | ||| |||||||| |||| |    
T  31656217 ttgtctgctcagatcaatcagtttagccttagcatttaggaaatggaaacttgtaacattaaaactatatttaggggcct-accttgaactatgattaca 31656119  T
Q  437 caatata 443  Q
    |||||||    
T  31656118 caatata 31656112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 237 - 378
Target Start/End: Complemental strand, 31646125 - 31645987
Alignment:
Q  237 tctaacctgctgtccacaccatttcctgtttcctcgtcaataacagctgatttatgcatactaggctttgctatattgattagatgttcacattcctctt 336  Q
    ||||||||| |||||||||  ||||| ||||| |||||||   |||  |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  31646125 tctaacctgttgtccacactctttcccgtttcatcgtcaa---cagtcgatttatgcatactaggcttggctatattgattagatgttcacattcctctt 31646029  T
Q  337 ttgtctgctcagatcaatcagcttagccttagcatttaggaa 378  Q
    ||||||||| ||||||||||||| |||||||| |||| ||||    
T  31646028 ttgtctgcttagatcaatcagctaagccttagtatttgggaa 31645987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 238 - 439
Target Start/End: Complemental strand, 31629944 - 31629739
Alignment:
Q  238 ctaacctgctgtccacaccatttcctgtttcctcgtcaataacagctgatttatgcatactaggctttgctatattgattagatgttcacattcctcttt 337  Q
    ||||||||||||||  ||  ||||||||||| |  |||| ||||| |||||| |||||||| ||||| ||| ||||||||||||||||||||||||  ||    
T  31629944 ctaacctgctgtccttactctttcctgtttcattatcaacaacagatgatttttgcatacttggcttggctgtattgattagatgttcacattccttctt 31629845  T
Q  338 tgtctgctcagatcaatcagct-tagcctta-gcatttaggaaatggaa-atttgtaacattaaaactatat-ttaggggattaaccctgaactataatt 433  Q
    |||||||| ||||||||||| |  ||||||| |||||| ||||||||||   |||||||||||| | ||||| |||||| ||||||| |||||| |||||    
T  31629844 tgtctgcttagatcaatcagataaagccttaggcatttgggaaatggaagcattgtaacattaatagtatatattagggaattaaccttgaactttaatt 31629745  T
Q  434 aaacaa 439  Q
    ||||||    
T  31629744 aaacaa 31629739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 355 - 418
Target Start/End: Original strand, 34212304 - 34212367
Alignment:
Q  355 cagcttagccttagcatttaggaaatggaaatttgtaacattaaaactatatttaggggattaa 418  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  34212304 cagcttagccttagcatttagaaaatggaaatttgtaacattaaaactatatttaggggattaa 34212367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 29 - 135
Target Start/End: Complemental strand, 31630185 - 31630079
Alignment:
Q  29 cacctacaggtataaaagtaaaatcagcaattcttctctcaatattcttcacaattctatcacttcctctcttaagaaaagctccagagcttgtccgttc 128  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||  ||||| |||||| | |||||||| |||||||||||| ||| |    
T  31630185 cacctacaggtataaaagtaaaatcagcgattcttttctcaatattcctcacaatttcatcacctcctctgtcaagaaaagttccagagcttgttcgtac 31630086  T
Q  129 actaaat 135  Q
     ||||||    
T  31630085 gctaaat 31630079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 29 - 154
Target Start/End: Complemental strand, 31646292 - 31646167
Alignment:
Q  29 cacctacaggtataaaagtaaaatcagcaattcttctctcaatattcttcacaattctatcacttcctctcttaagaaaagctccagagcttgtccgttc 128  Q
    |||||||||||||||||||||||||||||||||||  |||||||||| ||| |||| |||||  |||||| || | ||||| |||||||||||| ||| |    
T  31646292 cacctacaggtataaaagtaaaatcagcaattctttgctcaatattcctcagaattttatcatgtcctctgttgataaaagttccagagcttgtacgtgc 31646193  T
Q  129 actaaatacagaatgaatatgtaaac 154  Q
    ||||||| || ||  |||||||||||    
T  31646192 actaaatgcaaaagaaatatgtaaac 31646167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 25 - 152
Target Start/End: Complemental strand, 31637459 - 31637332
Alignment:
Q  25 aacacacctacaggtataaaagtaaaatcagcaattcttctctcaatattcttcacaattctatcacttcctctcttaagaaaagctccagagcttgtcc 124  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||||   ||| |||| |||||  |||||| |  | ||||| |||||||||||| |    
T  31637459 aacacacctacaggtataaaagtaaaatcagcaattcttttctcgatatcgctcaaaattttatcatatcctctgtcgataaaagttccagagcttgttc 31637360  T
Q  125 gttcactaaatacagaatgaatatgtaa 152  Q
    || |||||||| || ||  |||||||||    
T  31637359 gtgcactaaatgcaaaagaaatatgtaa 31637332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 237 - 359
Target Start/End: Complemental strand, 31637211 - 31637089
Alignment:
Q  237 tctaacctgctgtccacaccatttcctgtttcctcgtcaataacagctgatttatgcatactaggctttgctatattgattagatgttcacattcctctt 336  Q
    ||||||||||||| |||||  |||||||||   || |||| |||||  ||||| |||| |  |||||| |||||||||||||||||||||||||||||||    
T  31637211 tctaacctgctgttcacactctttcctgttgtatcatcaacaacagtcgatttctgcacatcaggcttggctatattgattagatgttcacattcctctt 31637112  T
Q  337 ttgtctgctcagatcaatcagct 359  Q
    ||| ||||| |||| || |||||    
T  31637111 ttgcctgctaagattaaccagct 31637089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 29 - 122
Target Start/End: Complemental strand, 31656530 - 31656437
Alignment:
Q  29 cacctacaggtataaaagtaaaatcagcaattcttctctcaatattcttcacaattctatcacttcctctcttaagaaaagctccagagcttgt 122  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||  ||||||||  ||||| | |||| | |||||| | ||||||||||||    
T  31656530 cacctacaggtataaaagtaaaatcagcgattcttttctcaatattgctcacaatttcatcaccttctctgtcaagaaatgttccagagcttgt 31656437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 9e-28; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 355 - 418
Target Start/End: Original strand, 12002516 - 12002579
Alignment:
Q  355 cagcttagccttagcatttaggaaatggaaatttgtaacattaaaactatatttaggggattaa 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12002516 cagcttagccttagcatttaggaaatggaaatttgtaacattaaaactatatttaggggattaa 12002579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 355 - 418
Target Start/End: Original strand, 21452366 - 21452429
Alignment:
Q  355 cagcttagccttagcatttaggaaatggaaatttgtaacattaaaactatatttaggggattaa 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  21452366 cagcttagccttagcatttaggaaatggaaatttgtaacattaaaactgtatttaggggattaa 21452429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 9e-28; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 355 - 418
Target Start/End: Complemental strand, 12758914 - 12758851
Alignment:
Q  355 cagcttagccttagcatttaggaaatggaaatttgtaacattaaaactatatttaggggattaa 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12758914 cagcttagccttagcatttaggaaatggaaatttgtaacattaaaactatatttaggggattaa 12758851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 355 - 418
Target Start/End: Complemental strand, 32398199 - 32398136
Alignment:
Q  355 cagcttagccttagcatttaggaaatggaaatttgtaacattaaaactatatttaggggattaa 418  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  32398199 cagcttagccttagcatttaggaaatggaaattcgtaacattaaaactatatttaggggattaa 32398136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 355 - 418
Target Start/End: Original strand, 14653888 - 14653951
Alignment:
Q  355 cagcttagccttagcatttaggaaatggaaatttgtaacattaaaactatatttaggggattaa 418  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  14653888 cagcttagccttagcatttagaaaatagaaatttgtaacattaaaactatatttaggggattaa 14653951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 9e-28; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 355 - 418
Target Start/End: Original strand, 4329334 - 4329397
Alignment:
Q  355 cagcttagccttagcatttaggaaatggaaatttgtaacattaaaactatatttaggggattaa 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4329334 cagcttagccttagcatttaggaaatggaaatttgtaacattaaaactatatttaggggattaa 4329397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 355 - 418
Target Start/End: Complemental strand, 20921163 - 20921100
Alignment:
Q  355 cagcttagccttagcatttaggaaatggaaatttgtaacattaaaactatatttaggggattaa 418  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  20921163 cagcttagccttagcatttaggaaatggaaatttgtaatattaaaactatatttaggggattaa 20921100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 9105454 - 9105507
Alignment:
Q  30 acctacaggtataaaagtaaaatcagcaattcttctctcaatattcttcacaat 83  Q
    ||||||||| ||||||||||| || |||||| || ||||||||||| |||||||    
T  9105454 acctacaggaataaaagtaaagtcggcaatttttttctcaatattcctcacaat 9105507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 291 - 359
Target Start/End: Original strand, 9105723 - 9105791
Alignment:
Q  291 tgcatactaggctttgctatattgattagatgttcacattcctcttttgtctgctcagatcaatcagct 359  Q
    |||||||| ||||||||||| | ||| |||| |||||||||||| || |||| ||||||| | ||||||    
T  9105723 tgcatactcggctttgctatgtcgatcagatattcacattcctccttggtctactcagattattcagct 9105791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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