View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18284_high_6 (Length: 343)
Name: NF18284_high_6
Description: NF18284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18284_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 12 - 325
Target Start/End: Original strand, 44885142 - 44885455
Alignment:
| Q |
12 |
atgaaggcggtgttgggaagcggtgtatggataccatctactttctgccggacagttggaagagaaattggatattagtattgtggattggagttatgtt |
111 |
Q |
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| T |
44885142 |
atgaaggcggtgttgggaagcggtgtatggataccatctactttctgccggacagttggaagagaaattggatattagtattgtggattggagttatgtt |
44885241 |
T |
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| Q |
112 |
aggtctatttgcctacaaatttgtgcagtatcgaagaaaagctgcttatgaggtgatgggccattgtgtttgcatggctaaaggtgcagctgagacactc |
211 |
Q |
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| T |
44885242 |
aggtctatttgcctacaaatttgtgcagtatcgaagaaaagctgcttatgaggtgatgggccattgtgtttgcatggctaaaggtgcagctgagacactc |
44885341 |
T |
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| Q |
212 |
aaattgaacatggctcttatcttgttacctgtttgccgaaacactgttacatggctcaggagcaagaccaagctaggcattgttgttccttttaatgaca |
311 |
Q |
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| T |
44885342 |
aaattgaacatggctcttatcttgttacctgtttgccgaaacactgttacatggctcaggagcaagaccaagctaggcattgttgttccttttaatgaca |
44885441 |
T |
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| Q |
312 |
acctcaacttccac |
325 |
Q |
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| T |
44885442 |
acctcaacttccac |
44885455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 67 - 321
Target Start/End: Original strand, 44898525 - 44898779
Alignment:
| Q |
67 |
ttggaagagaaattggatattagtattgtggattggagttatgttaggtctatttgcctacaaatttgtgcagtatcgaagaaaagctgcttatgaggtg |
166 |
Q |
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| T |
44898525 |
ttggaagagaatttggatattagcattgtggattggtgttatgtgtggtctatttgcctacaaattcatgcagtatagaagaaaagctgcatatgaagtg |
44898624 |
T |
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| Q |
167 |
atgggccattgtgtttgcatggctaaaggtgcagctgagacactcaaattgaacatggctcttatcttgttacctgtttgccgaaacactgttacatggc |
266 |
Q |
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| T |
44898625 |
atgggccattgtgtctgtatggctaaaggtgcagctgagacactcaaattgaatatggccattatcttattacctgtttgccgaaacaccgtaacctggc |
44898724 |
T |
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| Q |
267 |
tcaggagcaagaccaagctaggcattgttgttccttttaatgacaacctcaactt |
321 |
Q |
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| T |
44898725 |
ttagggacaagaccaagctaggcattgctgttccttttgatgacaacctccactt |
44898779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 45 - 325
Target Start/End: Original strand, 44914417 - 44914697
Alignment:
| Q |
45 |
ccatctactttctgccggacagttggaagagaaattggatattagtattgtggattggagttatgttaggtctatttgcctacaaatttgtgcagtatcg |
144 |
Q |
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| T |
44914417 |
ccatttactttctgcaggacaattggcaaagaacttggatattggtactatggattggtgttatgtgtggtctatttgcctacaaattcatgcagtacag |
44914516 |
T |
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| Q |
145 |
aagaaaagctgcttatgaggtgatgggccattgtgtttgcatggctaaaggtgcagctgagacactcaaattgaacatggctcttatcttgttacctgtt |
244 |
Q |
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| T |
44914517 |
aagaaaagatgcttatgaagtaatgggtcattgtgtgtgcatggctaaaggtgcagctgagacactcaaattgaacatggctattatcttgttacctgtt |
44914616 |
T |
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| Q |
245 |
tgccgaaacactgttacatggctcaggagcaagaccaagctaggcattgttgttccttttaatgacaacctcaacttccac |
325 |
Q |
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| T |
44914617 |
tgtcgaaacaccatcacatggcttaggaacaagaccaaactaggcattgctgttccttttgatgataacctcaacttccac |
44914697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 93 - 309
Target Start/End: Original strand, 39982467 - 39982683
Alignment:
| Q |
93 |
tgtggattggagttatgttaggtctatttgcctacaaatttgtgcagtatcgaagaaaagctgcttatgaggtgatgggccattgtgtttgcatggctaa |
192 |
Q |
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|||||||||| || |||||||| |||||||||| ||||||||||| ||| | |||| | |||| ||| | |||||||| || ||||| |||||||| || |
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| T |
39982467 |
tgtggattggtgtcatgttaggcctatttgcctttaaatttgtgcaatataggagaagatctgcatataaagtgatggggcactgtgtgtgcatggcaaa |
39982566 |
T |
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| Q |
193 |
aggtgcagctgagacactcaaattgaacatggctcttatcttgttacctgtttgccgaaacactgttacatggctcaggagcaagaccaagctaggcatt |
292 |
Q |
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| T |
39982567 |
aggggctgctgaaacacttaaattgaacatggccattatcttattgcctgtttgccgaaacaccatcacttggctcaggaataagaccaagctaggcgct |
39982666 |
T |
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| Q |
293 |
gttgttccttttaatga |
309 |
Q |
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| T |
39982667 |
tttgttccttttgatga |
39982683 |
T |
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