View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18284_high_7 (Length: 328)
Name: NF18284_high_7
Description: NF18284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18284_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 143; Significance: 4e-75; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 132 - 312
Target Start/End: Original strand, 48209325 - 48209507
Alignment:
| Q |
132 |
ttaggggtgatagttattagtcatctggtctgaaagaatacatacaaagacaa--tcaatcaaactttttnnnnnnncagacatcgagcaggcaagacgt |
229 |
Q |
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| T |
48209325 |
ttaggggtgatagttattagtcatctggtctgaaagaatacatacaaagacaaaatcaatcaaactttttaaaaaaacagacatcgagcaggcaagacgt |
48209424 |
T |
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| Q |
230 |
caagatcatgattcaactgttttaaaccgctcaaatctagacaaaacggtgcttgaactgctcagataaccgaaccataaaca |
312 |
Q |
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| T |
48209425 |
caagatcatgattcaactgttttaaaccgctcaaacctagacaaaacggtgtttgaactgctcagataaccgaaccataaaca |
48209507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 48209194 - 48209270
Alignment:
| Q |
1 |
ggaatgagtgagaaaaggaagagatagaaaaggaaataacaaagaaacaaggactgcataattactcaatatccttt |
77 |
Q |
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| T |
48209194 |
ggaatgggtgagaaaaggaagagatagaaaaggaaataacaaagaaacaaggactgcataattactcaatatccttt |
48209270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 207 - 312
Target Start/End: Original strand, 12698657 - 12698762
Alignment:
| Q |
207 |
cagacatcgagcaggcaagacgtcaagatcatgattcaactgttttaaaccgctcaaatctagacaaaacggtgcttgaactgctcagataaccgaacca |
306 |
Q |
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| T |
12698657 |
cagacatcgagcagacaagacgcctaaatcatgattcaactgttttaaaccgctcgaaccaagacaaaacagtggttgaaccactcaaataacaaaacca |
12698756 |
T |
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| Q |
307 |
taaaca |
312 |
Q |
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| T |
12698757 |
taaaca |
12698762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 234 - 312
Target Start/End: Original strand, 12698820 - 12698897
Alignment:
| Q |
234 |
atcatgattcaactgttttaaaccgctcaaatctagacaaaacggtgcttgaactgctcagataaccgaaccataaaca |
312 |
Q |
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| T |
12698820 |
atcatgattcaactgttttaaaccgctcgaaccaagac-aaacggtggttgaaccgctcaaataacaaaaccataaaca |
12698897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 29 - 66
Target Start/End: Original strand, 12698422 - 12698459
Alignment:
| Q |
29 |
aaaggaaataacaaagaaacaaggactgcataattact |
66 |
Q |
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| T |
12698422 |
aaaggaaataacaaagaaacaaggattgcataattact |
12698459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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