View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18284_low_11 (Length: 271)
Name: NF18284_low_11
Description: NF18284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18284_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 15 - 247
Target Start/End: Complemental strand, 17620268 - 17620036
Alignment:
| Q |
15 |
caaaggccaactcattataggtaacccaactttaatgctttccattattgtgctccaaccacaatgagtcacaattcctcctatagctttattttcaagt |
114 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
17620268 |
caaaggccaactcaccataggtaacccaactttaatgctttccattattgtgctccaaccacaatgagtcacaattcctccaatagctttattttcaagt |
17620169 |
T |
|
| Q |
115 |
atcaacatttgtggggcccaaccccatatcaaataacccttattgttttccttcattcttttctcaaactcctccataaaaccttcatcaccttcttttt |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17620168 |
atcaacatttgtggggcccaaccccatatcaaataacccttgttgttttctttcattcttttctcaaactcctccataaaaccttcatcaccttcttttt |
17620069 |
T |
|
| Q |
215 |
cattaatattcttacgaacaacccaaatgaaat |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
17620068 |
cattaatattcttacgaacaacccaaatgaaat |
17620036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 15 - 250
Target Start/End: Original strand, 17572450 - 17572679
Alignment:
| Q |
15 |
caaaggccaactcattataggtaacccaactttaatgctttccattattgtgctccaaccacaatgagtcacaattcctcctatagctttattttcaagt |
114 |
Q |
| |
|
|||||||||| ||| ||||| || ||||| || |||||||| | |||||| |||||||||||||| |||| |||||||| |||||||| || |||||| |
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| T |
17572450 |
caaaggccaagtcaccataggcaaaccaacattcatgctttcaactattgtattccaaccacaatgactcaccattcctccaatagctttgttctcaagt |
17572549 |
T |
|
| Q |
115 |
atcaacatttgtggggcccaaccccatatcaaataacccttattgttttccttcattcttttctcaaactcctccataaaaccttcatcaccttcttttt |
214 |
Q |
| |
|
|| |||| ||| || |||||||||||||||||||||||||||||| |||| |||| ||| || ||||||||||||||||| ||| ||||||||||| | |
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| T |
17572550 |
attaacaattggggagcccaaccccatatcaaataacccttattgctttctttcactctcttttcaaactcctccataaatcct---tcaccttctttat |
17572646 |
T |
|
| Q |
215 |
cattaatattcttacgaacaacccaaatgaaatcat |
250 |
Q |
| |
|
||| |||| ||||||||||||||||||||||||| |
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|
| T |
17572647 |
cat---tatttttacgaacaacccaaatgaaatcat |
17572679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 160; Significance: 2e-85; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 15 - 250
Target Start/End: Original strand, 14710047 - 14710276
Alignment:
| Q |
15 |
caaaggccaactcattataggtaacccaactttaatgctttccattattgtgctccaaccacaatgagtcacaattcctcctatagctttattttcaagt |
114 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
14710047 |
caaaggccaactcaccatagataacccaactttaatgctttccattattgtgctccaaccacaatgagtcacaattcctccaatagctttattttcaagt |
14710146 |
T |
|
| Q |
115 |
atcaacatttgtggggcccaaccccatatcaaataacccttattgttttccttcattcttttctcaaactcctccataaaaccttcatcaccttcttttt |
214 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||| |||| |||| ||| || ||||||||||||||||| ||| ||||||||||| | |
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|
| T |
14710147 |
atcaacatttgtggtgcccaaccccatatcaaataacccttattgctttctttcactctcttttcaaactcctccataaatcct---tcaccttctttat |
14710243 |
T |
|
| Q |
215 |
cattaatattcttacgaacaacccaaatgaaatcat |
250 |
Q |
| |
|
||| |||||||||||||||||||||||||||||| |
|
|
| T |
14710244 |
cat---tattcttacgaacaacccaaatgaaatcat |
14710276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 98
Target Start/End: Complemental strand, 26129298 - 26129268
Alignment:
| Q |
68 |
tccaaccacaatgagtcacaattcctcctat |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
26129298 |
tccaaccacaatgagtcacaattcctcctat |
26129268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 96
Target Start/End: Complemental strand, 26251579 - 26251551
Alignment:
| Q |
68 |
tccaaccacaatgagtcacaattcctcct |
96 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
26251579 |
tccaaccacaatgagtcacaattcctcct |
26251551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 96
Target Start/End: Complemental strand, 26298179 - 26298151
Alignment:
| Q |
68 |
tccaaccacaatgagtcacaattcctcct |
96 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
26298179 |
tccaaccacaatgagtcacaattcctcct |
26298151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 109; Significance: 7e-55; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 16 - 248
Target Start/End: Complemental strand, 12613779 - 12613553
Alignment:
| Q |
16 |
aaaggccaactcattataggtaacccaactttaatgctttccattattgtgctccaaccacaatgagtcacaattcctcctatagctttattttcaagta |
115 |
Q |
| |
|
||||||||| ||| ||||| |||||||| || | ||||| | || |||| |||||||||||||||||||||||||||| |||||||| || ||||||| |
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|
| T |
12613779 |
aaaggccaagtcaccataggcaacccaacattcaaactttcaactactgtgttccaaccacaatgagtcacaattcctccaatagctttgttctcaagta |
12613680 |
T |
|
| Q |
116 |
tcaacatttgtggggcccaaccccatatcaaataacccttattgttttccttcattcttttctcaaactcctccataaaaccttcatcaccttctttttc |
215 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||| ||||||||||| || |
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|
| T |
12613679 |
tcaacaattgtggtgcccaaccccatatcaaataacccttattgctttctttcactcttttctcaaactcctccataaaacct---tcaccttctttatc |
12613583 |
T |
|
| Q |
216 |
attaatattcttacgaacaacccaaatgaaatc |
248 |
Q |
| |
|
|| || | |||||||| |||||||||||||| |
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|
| T |
12613582 |
at---tacttttacgaactacccaaatgaaatc |
12613553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 112 - 186
Target Start/End: Complemental strand, 14869970 - 14869896
Alignment:
| Q |
112 |
agtatcaacatttgtggggcccaaccccatatcaaataacccttattgttttccttcattcttttctcaaactcc |
186 |
Q |
| |
|
||||||| || |||||| |||||||||||||||||||| || || ||| ||||||||||||| |||||||||||| |
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|
| T |
14869970 |
agtatcagcagttgtggtgcccaaccccatatcaaatagcctttgttgctttccttcattctcttctcaaactcc |
14869896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 211
Target Start/End: Original strand, 16908701 - 16908788
Alignment:
| Q |
124 |
tgtggggcccaaccccatatcaaataacccttattgttttccttcattcttttctcaaactcctccataaaaccttcatcaccttctt |
211 |
Q |
| |
|
||||| |||||||||||||||||||| || || || |||| |||||||| ||||||||||| || |||||| |||||||| |||| |
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|
| T |
16908701 |
tgtggtgcccaaccccatatcaaatagcctttgtttctttctttcattctcttctcaaactcactcaaaaaaccatcatcaccgtctt |
16908788 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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