View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18284_low_12 (Length: 268)
Name: NF18284_low_12
Description: NF18284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18284_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 19 - 261
Target Start/End: Complemental strand, 40068801 - 40068559
Alignment:
| Q |
19 |
actccatgttcagcaagttgtcttgaaatttcaaacccaattcctctatttccaccagtaaccacagcaattgtttccttagaccaccacctatatatat |
118 |
Q |
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| T |
40068801 |
actccatgttcagcaagttgtcttgaaatttcaaacccaattcctctatttccaccagtaaccacagcaattgtttccttagaccaccacctatatatat |
40068702 |
T |
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| Q |
119 |
attagcccaaaattaaatttaacacatgctaggtggaaatgtactagtattcattaattccatcgattaaggattgttaactattgattcaaaaatcaat |
218 |
Q |
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| T |
40068701 |
attagcccaaaattaaatttaacacatgctaggtggaaatatactagtattcattaattccatcgattaaggattgttaactattgattcaaaaatcaat |
40068602 |
T |
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| Q |
219 |
gtcattatacgcttaattaaactatgtgatccggttcatctca |
261 |
Q |
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| T |
40068601 |
gtcattatacgtttaattaaactatgtgattcggttcatctca |
40068559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 117
Target Start/End: Complemental strand, 44965513 - 44965414
Alignment:
| Q |
18 |
aactccatgttcagcaagttgtcttgaaatttcaaacccaattcctctatttccaccagtaaccacagcaattgtttccttagaccaccacctatatata |
117 |
Q |
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| T |
44965513 |
aactccatgatctgcaagttgtcttgaaatctcaaaaccaattcctcggtttccaccggtaaccacggcaatagtttccttggaccaccacctttatata |
44965414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 29 - 117
Target Start/End: Complemental strand, 10898409 - 10898321
Alignment:
| Q |
29 |
cagcaagttgtcttgaaatttcaaacccaattcctctatttccaccagtaaccacagcaattgtttccttagaccaccacctatatata |
117 |
Q |
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|||||||||| || |||| ||||||||||||||||| |||||||| |||||||||||||| ||||| ||||||||||||||| ||||| |
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| T |
10898409 |
cagcaagttgcctgcaaatctcaaacccaattcctctgtttccaccggtaaccacagcaatagtttctttagaccaccacctacatata |
10898321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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