View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18284_low_13 (Length: 261)
Name: NF18284_low_13
Description: NF18284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18284_low_13 |
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| [»] chr6 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 27 - 261
Target Start/End: Original strand, 24197887 - 24198122
Alignment:
| Q |
27 |
cacccatcactgtcatccttccccttttaatttcaattaatcatcattgataattttaaaacatggaacagcttgtttaattcatcattcacgcatcagt |
126 |
Q |
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| T |
24197887 |
cacccatcactgtcatccttccccttttaatttcaattaatcatcaatgataattttaaaacatggaacagcttgtttaattcatcattcacgcatcaat |
24197986 |
T |
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| Q |
127 |
ttttgtaattggtgatgaatattcccttaaacacatcaaaacattgtta-tttcatcatcacagtcaaaatcaattgttacggttgagaagacatcaaac |
225 |
Q |
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| T |
24197987 |
ttttgtaattggtgatgaatattcccttaaacacatcaaaacattgttattttcttcatcactgtcaaaatcaattgctacggttgagaagacatcaaac |
24198086 |
T |
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| Q |
226 |
agtagtcgcggttgagaagaagaaactaatttattt |
261 |
Q |
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| T |
24198087 |
agtagtcgcggttgagaagaagaaactaatttattt |
24198122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 24 - 261
Target Start/End: Original strand, 43449668 - 43449906
Alignment:
| Q |
24 |
agtcacccatcactgtcatccttccccttttaatttcaattaatcatcattgataattttaaaacatggaacagcttgtttaattcatcattcacgcatc |
123 |
Q |
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| T |
43449668 |
agtcacccatcactgtcatccttccccttttaatatcaattaatcatcaatgataattttaaaacatggaacagcttgtttaattcatcattcacgcatc |
43449767 |
T |
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| Q |
124 |
agtttttgtaattggtgatgaatattcccttaaacacatcaaaacattgtta-tttcatcatcacagtcaaaatcaattgttacggttgagaagacatca |
222 |
Q |
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| T |
43449768 |
aatttttgtaattggtgatgaatattcccttaaacacatcaaaacattgttattttcttcatcattgtcaaaatcaattgctacggttgagaagacatca |
43449867 |
T |
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| Q |
223 |
aacagtagtcgcggttgagaagaagaaactaatttattt |
261 |
Q |
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| T |
43449868 |
aacagtagtcgcggttgagaagaataaactaatttattt |
43449906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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