View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18284_low_2 (Length: 538)
Name: NF18284_low_2
Description: NF18284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18284_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 497; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 21 - 529
Target Start/End: Original strand, 26276669 - 26277177
Alignment:
| Q |
21 |
acagatagacttccttcctcatttggtttacataaatccctccaagccaccgtacaaatttttgcctgagtgatatcaccgctccaaataaaggtcttta |
120 |
Q |
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| T |
26276669 |
acagatagacctccttcctcatttggtttacataaatccctccaagccaccgtacaaatttttgcctgagtgatatcaccgctccaaataaaggtcttta |
26276768 |
T |
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| Q |
121 |
tcatcttggttaactgcttcaaaagattagcaggccaaggataaacatgaaatgagtacagcaacatactatttatcacagaattgacaagttgtactct |
220 |
Q |
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| T |
26276769 |
tcatcttggttaactgcttcaaaagattagcaggccaaggataaacatgaaatgagtacagcagcatactatttatcacagaattgacaagttgtactct |
26276868 |
T |
|
| Q |
221 |
ccccattatagataacagcaagcctttccaaacagccaatttgactttgattctgtccacaataggtcggaaatgatgagcttttgatctgcctttgaag |
320 |
Q |
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| T |
26276869 |
ccccattatagataacagcaagcctttccaaacagccaatttgactttgattatgtccacaataggtcggaaatgatgagcttttgatctgcctttgaag |
26276968 |
T |
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| Q |
321 |
agagggtgcgtgattgtttctaggtgctgcttctgtaaaggccaattggagtcctctgatcatatcttcctgaactgcccggaaacagggatgttgtgga |
420 |
Q |
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| T |
26276969 |
agagggtgcgtgattgtttctaggtgctgcttctgtaaaggccaattggagtcctctgatcatatcttcctgaactgcccggaaacagggatgttgtgga |
26277068 |
T |
|
| Q |
421 |
gttggttgaaagatgtggcccaacatttggacaattctagtggcgtgaatctgctgtccagttgctttgataagggtagcagatttactcatcaggttct |
520 |
Q |
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| T |
26277069 |
gttggttgaaagatgtggcccaacatttggacaattctagtggcgtgaatctgctgtccagttgctttgataagggtagcagatttactcatcaggttct |
26277168 |
T |
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| Q |
521 |
gatctctgc |
529 |
Q |
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| T |
26277169 |
gatctctgc |
26277177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 93 - 252
Target Start/End: Original strand, 39398737 - 39398897
Alignment:
| Q |
93 |
atatcaccgctccaaataaaggtctttatcatcttggttaact-gcttcaaaagattagcaggccaaggataaacatgaaatgagtacagcaacatacta |
191 |
Q |
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||||| |||||| ||||||| |||||||||||||||||| | ||| || |||||| | ||||||| ||||||||||||| ||||| || ||||||||| |
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| T |
39398737 |
atatccccgctctaaataaaattctttatcatcttggttaggttgctgcagaagattggtaggccaaagataaacatgaaacgagtaaagtaacatacta |
39398836 |
T |
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| Q |
192 |
tttatcacagaattgacaagttgtactctccccattatagataacagcaagcctttccaaa |
252 |
Q |
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| T |
39398837 |
ctaatcaccgaattgaccagctgaactcgtcccattatagataacaataagcctttccaaa |
39398897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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