View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18285_high_1 (Length: 784)
Name: NF18285_high_1
Description: NF18285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18285_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 764; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 764; E-Value: 0
Query Start/End: Original strand, 6 - 769
Target Start/End: Complemental strand, 1431536 - 1430773
Alignment:
| Q |
6 |
agaggaatgagaagggaactagaaaaggaaatggtttttacaatatgatgaggaagcataagaggcttggtttgaaggacggtattgttgacgagttaga |
105 |
Q |
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| T |
1431536 |
agaggaatgagaagggaactagaaaaggaaatggtttttacaatatgatgaggaagcataagaggcttggtttgaaggacggtattgttgacgagttaga |
1431437 |
T |
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| Q |
106 |
taatcctgatcttggaccgttcttgttgaagataacgagagatatgatatcttcgggtgagaatccgaacaaggctctcaattttggtcttagagctttg |
205 |
Q |
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| T |
1431436 |
taatcctgatcttggaccgttcttgttgaagataacgagagatatgatatcttcgggtgagaatccgaacaaggctctcaattttggtcttagagctttg |
1431337 |
T |
|
| Q |
206 |
aaatcatttgagatatgtaatgaagatggtaaaccaagtttggaattggtgatgtgtcttcatgtattggccacaatatactgtaatttaggacagtaca |
305 |
Q |
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| T |
1431336 |
aaatcatttgagatatgtaatgaagatggtaaaccaagtttggaattggtgatgtgtcttcatgtattggccacaatatactgtaatttaggacagtaca |
1431237 |
T |
|
| Q |
306 |
acgaggctataccgattctcgagcgttcgatcgaagttcctgtgttagaggatggtcaagatcatgcactagctaagtttgcagggtgtatgcaattagg |
405 |
Q |
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| T |
1431236 |
acgaggctataccgattctcgagcgttcgatcgaagttcctgtgttagaggatggtcaagatcatgcactagctaagtttgcagggtgtatgcaattagg |
1431137 |
T |
|
| Q |
406 |
tgatacttatgcaatgatgggaaatattgagaattctctactgttttatacagcaggtcttgaaattcaagggcaggtcctaggggaaaccgatcctcga |
505 |
Q |
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| T |
1431136 |
tgatacttatgcaatgatgggaaatattgagaattctctactgttttatacagcaggtcttgaaattcaagggcaggtcctaggggaaaccgatcctcga |
1431037 |
T |
|
| Q |
506 |
ttcggtgagacatgtcggtatgtagccgaagcacatgttcaagccctacaatttgatgaagcgaagaagctgtgtcaaatggctcttgatattcataagg |
605 |
Q |
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| T |
1431036 |
ttcggtgagacatgtcggtatgtagccgaagcacatgttcaagccctacaatttgatgaagcgaagaagctgtgtcaaatggctcttgatattcataagg |
1430937 |
T |
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| Q |
606 |
gaaatggtttgcctgcatcgtttgaagaagcagctgatcggagattgatgggactaatctgtgactcaaaaggtgattatgaaagtgctttagagcatta |
705 |
Q |
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| T |
1430936 |
gaaatggtttgcctgcatcgtttgaagaagcagctgatcggagattgatgggactaatctgtgactcaaaaggtgattatgaaagtgctttagagcatta |
1430837 |
T |
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| Q |
706 |
tgttctggcaagcgtggttatggcagaaaacggtcaggaactagacgttgcttcggttgattgt |
769 |
Q |
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| T |
1430836 |
tgttctggcaagcgtggttatggcagaaaacggtcaggaactagacgttgcttcggttgattgt |
1430773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 356 - 440
Target Start/End: Original strand, 1250630 - 1250714
Alignment:
| Q |
356 |
gatggtcaagatcatgcactagctaagtttgcagggtgtatgcaattaggtgatacttatgcaatgatgggaaatattgagaatt |
440 |
Q |
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| T |
1250630 |
gatggtcaagatcatgcacaagctaagtttgcatggtgcgtgaaattacatgacacttatacaatgatgggaaatatcgagaatt |
1250714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 460 - 549
Target Start/End: Original strand, 1250721 - 1250810
Alignment:
| Q |
460 |
aggtcttgaaattcaagggcaggtcctaggggaaaccgatcctcgattcggtgagacatgtcggtatgtagccgaagcacatgttcaagc |
549 |
Q |
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| T |
1250721 |
aggacttgaaattccaggtcaggacttgggggaaactgatcctagattcggtgagacatgtatgcacgtagctgaggcacatgttcaagc |
1250810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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