View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18285_high_10 (Length: 386)

Name: NF18285_high_10
Description: NF18285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18285_high_10
NF18285_high_10
[»] chr5 (24 HSPs)
chr5 (12-289)||(93050-93327)
chr5 (19-281)||(23434418-23434680)
chr5 (19-281)||(23445785-23446047)
chr5 (319-386)||(93333-93400)
chr5 (106-267)||(21613862-21614023)
chr5 (335-379)||(87501-87545)
chr5 (133-200)||(17450180-17450247)
chr5 (133-179)||(21417833-21417879)
chr5 (133-181)||(20787392-20787440)
chr5 (133-181)||(23403117-23403165)
chr5 (133-179)||(15747332-15747378)
chr5 (133-179)||(17614426-17614472)
chr5 (133-179)||(17726283-17726329)
chr5 (133-179)||(27045690-27045736)
chr5 (133-179)||(31355900-31355946)
chr5 (133-179)||(36695062-36695108)
chr5 (133-179)||(37733418-37733464)
chr5 (136-181)||(1114748-1114793)
chr5 (136-181)||(20559098-20559143)
chr5 (105-186)||(22153849-22153930)
chr5 (133-221)||(21517820-21517908)
chr5 (133-181)||(34059281-34059329)
chr5 (136-186)||(24931686-24931736)
chr5 (133-179)||(31445217-31445263)
[»] chr8 (16 HSPs)
chr8 (12-289)||(17262816-17263093)
chr8 (12-289)||(20378824-20379101)
chr8 (67-281)||(24648369-24648583)
chr8 (102-289)||(22526933-22527120)
chr8 (102-266)||(19932595-19932759)
chr8 (102-287)||(22666515-22666700)
chr8 (13-181)||(16206123-16206291)
chr8 (133-181)||(23466571-23466619)
chr8 (136-181)||(30321967-30322012)
chr8 (133-181)||(25681238-25681286)
chr8 (133-179)||(23369500-23369546)
chr8 (133-179)||(32084973-32085019)
chr8 (136-181)||(19421891-19421936)
chr8 (133-264)||(18156985-18157116)
chr8 (133-181)||(3836411-3836459)
chr8 (109-181)||(19132233-19132305)
[»] chr3 (24 HSPs)
chr3 (12-289)||(12954991-12955268)
chr3 (14-289)||(14081490-14081765)
chr3 (21-288)||(17254027-17254294)
chr3 (12-289)||(17220450-17220727)
chr3 (133-179)||(9990505-9990551)
chr3 (133-179)||(15223304-15223350)
chr3 (133-181)||(4407860-4407908)
chr3 (133-181)||(9387807-9387855)
chr3 (133-181)||(16667675-16667723)
chr3 (133-264)||(1791096-1791227)
chr3 (133-196)||(9003009-9003072)
chr3 (133-179)||(6497583-6497629)
chr3 (133-179)||(14584847-14584893)
chr3 (133-179)||(16388124-16388170)
chr3 (136-181)||(7801289-7801334)
chr3 (136-181)||(13074553-13074598)
chr3 (136-181)||(17906772-17906817)
chr3 (105-186)||(20680407-20680488)
chr3 (136-181)||(29468432-29468477)
chr3 (136-181)||(14254496-14254541)
chr3 (231-287)||(5196586-5196642)
chr3 (133-181)||(5196692-5196740)
chr3 (109-181)||(37870014-37870086)
chr3 (109-181)||(37878532-37878604)
[»] scaffold0193 (1 HSPs)
scaffold0193 (12-289)||(6256-6533)
[»] scaffold0084 (1 HSPs)
scaffold0084 (12-287)||(41291-41561)
[»] scaffold0594 (1 HSPs)
scaffold0594 (12-289)||(4185-4463)
[»] chr2 (9 HSPs)
chr2 (64-289)||(24380508-24380730)
chr2 (33-283)||(18941287-18941537)
chr2 (133-179)||(35256502-35256548)
chr2 (133-179)||(35267126-35267172)
chr2 (136-181)||(28728518-28728563)
chr2 (133-179)||(26870676-26870722)
chr2 (105-186)||(4213397-4213478)
chr2 (136-181)||(28376374-28376419)
chr2 (105-186)||(40225798-40225879)
[»] scaffold0676 (1 HSPs)
scaffold0676 (13-289)||(1503-1779)
[»] chr4 (14 HSPs)
chr4 (112-283)||(15142830-15143001)
chr4 (214-287)||(19615608-19615681)
chr4 (133-200)||(19574576-19574643)
chr4 (133-179)||(24643890-24643936)
chr4 (133-181)||(3376510-3376558)
chr4 (133-179)||(10294254-10294300)
chr4 (133-179)||(11518689-11518735)
chr4 (133-179)||(11539612-11539658)
chr4 (133-179)||(18759736-18759782)
chr4 (133-179)||(39517457-39517503)
chr4 (133-179)||(49511102-49511148)
chr4 (133-179)||(55752495-55752541)
chr4 (105-186)||(16259425-16259506)
chr4 (115-264)||(15471743-15471892)
[»] scaffold0396 (1 HSPs)
scaffold0396 (67-284)||(10718-10935)
[»] scaffold0004 (1 HSPs)
scaffold0004 (5-289)||(8937-9210)
[»] chr1 (9 HSPs)
chr1 (112-289)||(20932709-20932886)
chr1 (46-287)||(36137457-36137698)
chr1 (133-265)||(21131598-21131730)
chr1 (136-181)||(150948-150993)
chr1 (105-186)||(21867151-21867232)
chr1 (136-181)||(26559865-26559910)
chr1 (105-180)||(12620409-12620484)
chr1 (136-179)||(21164663-21164706)
chr1 (133-181)||(22461278-22461326)
[»] scaffold0324 (1 HSPs)
scaffold0324 (101-281)||(11014-11194)
[»] chr7 (12 HSPs)
chr7 (106-242)||(13131565-13131701)
chr7 (105-181)||(4215541-4215617)
chr7 (133-179)||(1991087-1991133)
chr7 (133-179)||(18432081-18432127)
chr7 (105-186)||(170416-170497)
chr7 (105-186)||(8620890-8620971)
chr7 (136-181)||(9163109-9163154)
chr7 (103-256)||(13660127-13660279)
chr7 (105-186)||(17957407-17957488)
chr7 (105-186)||(22092670-22092751)
chr7 (136-179)||(25208357-25208400)
chr7 (133-181)||(14137188-14137236)
[»] scaffold0379 (1 HSPs)
scaffold0379 (13-289)||(1029-1305)
[»] scaffold0810 (1 HSPs)
scaffold0810 (102-273)||(1098-1269)
[»] scaffold0863 (2 HSPs)
scaffold0863 (165-263)||(4682-4780)
scaffold0863 (12-122)||(4569-4679)
[»] scaffold1465 (1 HSPs)
scaffold1465 (133-181)||(1119-1167)
[»] chr6 (20 HSPs)
chr6 (110-284)||(16879581-16879755)
chr6 (133-179)||(18831546-18831592)
chr6 (133-179)||(26037120-26037166)
chr6 (133-181)||(18922666-18922714)
chr6 (133-181)||(25797369-25797417)
chr6 (105-181)||(32969165-32969241)
chr6 (133-179)||(4634430-4634476)
chr6 (133-179)||(13916767-13916813)
chr6 (133-179)||(21122999-21123045)
chr6 (133-179)||(27345250-27345296)
chr6 (133-179)||(27405990-27406036)
chr6 (133-179)||(32308298-32308344)
chr6 (136-181)||(12361612-12361657)
chr6 (105-186)||(12858423-12858504)
chr6 (136-181)||(20037141-20037186)
chr6 (115-264)||(22379458-22379607)
chr6 (133-181)||(22289495-22289543)
chr6 (133-181)||(22808803-22808851)
chr6 (133-177)||(25732088-25732132)
chr6 (109-181)||(26868307-26868379)
[»] scaffold0865 (1 HSPs)
scaffold0865 (133-179)||(3570-3616)
[»] scaffold1002 (1 HSPs)
scaffold1002 (133-181)||(908-956)
[»] scaffold0414 (1 HSPs)
scaffold0414 (109-181)||(3682-3754)
[»] scaffold0398 (2 HSPs)
scaffold0398 (133-181)||(960-1008)
scaffold0398 (133-181)||(9215-9263)
[»] scaffold0176 (1 HSPs)
scaffold0176 (102-266)||(12587-12751)
[»] scaffold2009 (1 HSPs)
scaffold2009 (128-266)||(575-713)
[»] scaffold0195 (1 HSPs)
scaffold0195 (133-196)||(29574-29637)
[»] scaffold0497 (2 HSPs)
scaffold0497 (133-179)||(6903-6949)
scaffold0497 (133-181)||(3626-3674)
[»] scaffold0454 (1 HSPs)
scaffold0454 (133-179)||(4846-4892)
[»] scaffold0272 (2 HSPs)
scaffold0272 (133-179)||(17744-17790)
scaffold0272 (133-179)||(22831-22877)
[»] scaffold0042 (1 HSPs)
scaffold0042 (133-179)||(1051-1097)
[»] scaffold0162 (1 HSPs)
scaffold0162 (136-181)||(18003-18048)
[»] scaffold0133 (1 HSPs)
scaffold0133 (136-181)||(39598-39643)
[»] scaffold0450 (2 HSPs)
scaffold0450 (133-181)||(1508-1556)
scaffold0450 (231-287)||(1402-1458)
[»] scaffold0411 (1 HSPs)
scaffold0411 (133-264)||(3659-3790)
[»] scaffold0011 (1 HSPs)
scaffold0011 (111-266)||(131854-132009)
[»] scaffold1362 (1 HSPs)
scaffold1362 (133-179)||(730-776)
[»] scaffold1078 (1 HSPs)
scaffold1078 (133-179)||(1029-1075)
[»] scaffold0670 (1 HSPs)
scaffold0670 (133-179)||(781-827)
[»] scaffold0322 (1 HSPs)
scaffold0322 (133-179)||(6037-6083)
[»] scaffold0201 (1 HSPs)
scaffold0201 (133-179)||(1986-2032)
[»] scaffold0422 (1 HSPs)
scaffold0422 (155-260)||(15073-15178)


Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 12 - 289
Target Start/End: Original strand, 93050 - 93327
Alignment:
Q  12 caaaggtggtataggtaacagcaagaccagtccctggaatggaatagttcataagtccatgttcaacaacaaaaagaaagatgcatattgtgatttgagc 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  93050 caaaggtggtataggtaacagcaagaccagtccctggaatggaatagttcataagtccatgttcaacaacaaaaagaaaggtgcatactgtgatttgagc 93149  T
Q  112 atggagaagaaaatgtttctcaagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaactctctttgcagcacataatatttcttcatt 211  Q
    ||| |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  93150 atgaagaagaaaatgtttctgaaaattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaactctctttggagcacagaatatttcttcatt 93249  T
Q  212 acttcatcacgaaggaaaaagcaaatgtgcccaagtacatcttcaagcacatgatcaaagagctaagggaaagccaag 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  93250 acttcatcacgaaggaaaaagcaaatgtgcccaagtacatcttcaagcacatgatcaaagagctaagggaaagccaag 93327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 19 - 281
Target Start/End: Original strand, 23434418 - 23434680
Alignment:
Q  19 ggtataggtaacagcaagaccagtccctggaatggaatagttcataagtccatgttcaacaacaaaaagaaagatgcatattgtgatttgagcatggaga 118  Q
    |||||||||||||||||||||||||| |||||||   | ||  |  |||||||||||||||||| |||||| | ||| || | | |||||||||||||||    
T  23434418 ggtataggtaacagcaagaccagtccttggaatgaggtggtcaaccagtccatgttcaacaacacaaagaagggtgcttacttttatttgagcatggaga 23434517  T
Q  119 agaaaatgtttctcaagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaactctctttgcagcacataatatttcttcattacttcat 218  Q
    | || ||| | || || |||||||||||||| |||||||||||||||||||||||||| |||| ||| ||| |||| | |||||||||||||||||||||    
T  23434518 ataagatgctcctgaaaattcagaatgaaaatctcctaccaaaaggtggtggtagtgaccaaccctccttggagcaaaaaatatttcttcattacttcat 23434617  T
Q  219 cacgaaggaaaaagcaaatgtgcccaagtacatcttcaagcacatgatcaaagagctaaggga 281  Q
    |||||||| ||||||||||||||||| |||||| ||||||||||| || |||||||| |||||    
T  23434618 cacgaaggcaaaagcaaatgtgcccaggtacatattcaagcacataatgaaagagcttaggga 23434680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 19 - 281
Target Start/End: Original strand, 23445785 - 23446047
Alignment:
Q  19 ggtataggtaacagcaagaccagtccctggaatggaatagttcataagtccatgttcaacaacaaaaagaaagatgcatattgtgatttgagcatggaga 118  Q
    |||||||||||||||||||||||||| |||||||   | ||  |  |||||||||||||||||| |||||| | ||| || | | |||||||||||||||    
T  23445785 ggtataggtaacagcaagaccagtccttggaatgaggtggtcaaccagtccatgttcaacaacacaaagaagggtgcttacttttatttgagcatggaga 23445884  T
Q  119 agaaaatgtttctcaagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaactctctttgcagcacataatatttcttcattacttcat 218  Q
    | || ||| | || || |||||||||||||| |||||||||||||||||||||||||| |||| ||| ||| |||| | |||||||||||||||||||||    
T  23445885 ataagatgctcctgaaaattcagaatgaaaatctcctaccaaaaggtggtggtagtgaccaaccctccttggagcaaaaaatatttcttcattacttcat 23445984  T
Q  219 cacgaaggaaaaagcaaatgtgcccaagtacatcttcaagcacatgatcaaagagctaaggga 281  Q
    |||||||| ||||||||||||||||| |||||| ||||||||||| || |||||||| |||||    
T  23445985 cacgaaggcaaaagcaaatgtgcccaggtacatattcaagcacataatgaaagagcttaggga 23446047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 319 - 386
Target Start/End: Original strand, 93333 - 93400
Alignment:
Q  319 aaagaataatgcaccaatactttacattcatgacaaagaataatgcactaattcgacaaaataaaaag 386  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  93333 aaagaataatgcaccaatactttacattcatgacaaagaataatgcactaattcgacaaaataaaaag 93400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 106 - 267
Target Start/End: Original strand, 21613862 - 21614023
Alignment:
Q  106 ttgagcatggagaagaaaatgtttctcaagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaactctctttgcagcacataatatttc 205  Q
    ||||||||||||||||| ||| | || || || || ||||||||||| ||||||||||||||||| ||||||||||  || | | |||| || ||  |||    
T  21613862 ttgagcatggagaagaagatgctcctgaaaatccaaaatgaaaacctgctaccaaaaggtggtggcagtgatcaaccttcataggagcatatgatccttc 21613961  T
Q  206 ttcattacttcatcacgaaggaaaaagcaaatgtgcccaagtacatcttcaagcacatgatc 267  Q
    | || | |||||| ||    |||||||| ||||||||||  |||||||||| ||||||||||    
T  21613962 tacacttcttcataactggagaaaaagctaatgtgcccagatacatcttcaggcacatgatc 21614023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 335 - 379
Target Start/End: Original strand, 87501 - 87545
Alignment:
Q  335 atactttacattcatgacaaagaataatgcactaattcgacaaaa 379  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
T  87501 atactttacattcatgacaaaaaataatgcactaattcgacaaaa 87545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 200
Target Start/End: Complemental strand, 17450247 - 17450180
Alignment:
Q  133 aagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaactctctttgcagcacataat 200  Q
    |||||||||||||| || || ||||||||||||||||||||||||||||  ||| || ||||||||||    
T  17450247 aagattcagaatgacaatctactaccaaaaggtggtggtagtgatcaaccgtctctggagcacataat 17450180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 133 - 179
Target Start/End: Complemental strand, 21417879 - 21417833
Alignment:
Q  133 aagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatca 179  Q
    ||||||||||||||||| || ||||||||||||||||||||||||||    
T  21417879 aagattcagaatgaaaatctgctaccaaaaggtggtggtagtgatca 21417833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 133 - 181
Target Start/End: Original strand, 20787392 - 20787440
Alignment:
Q  133 aagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaac 181  Q
    ||||||||||| || ||||| ||||||||||||||||||||||||||||    
T  20787392 aagattcagaacgacaacctactaccaaaaggtggtggtagtgatcaac 20787440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 133 - 181
Target Start/End: Original strand, 23403117 - 23403165
Alignment:
Q  133 aagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaac 181  Q
    |||||||||||||| ||||| |||| |||||||||||||||||||||||    
T  23403117 aagattcagaatgacaacctactactaaaaggtggtggtagtgatcaac 23403165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 179
Target Start/End: Original strand, 15747332 - 15747378
Alignment:
Q  133 aagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatca 179  Q
    ||||||||||| |||||||| |||||||||||||||||| |||||||    
T  15747332 aagattcagaacgaaaacctactaccaaaaggtggtggtggtgatca 15747378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 179
Target Start/End: Original strand, 17614426 - 17614472
Alignment:
Q  133 aagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatca 179  Q
    ||||||||||| |||||||| |||||||||||||||||| |||||||    
T  17614426 aagattcagaacgaaaacctactaccaaaaggtggtggtggtgatca 17614472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 179
Target Start/End: Original strand, 17726283 - 17726329
Alignment:
Q  133 aagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatca 179  Q
    ||||||||||| |||||||| |||||||||||||||||| |||||||    
T  17726283 aagattcagaacgaaaacctactaccaaaaggtggtggtggtgatca 17726329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 179
Target Start/End: Complemental strand, 27045736 - 27045690
Alignment:
Q  133 aagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatca 179  Q
    ||||||||||| |||||||| |||||||||||||||||| |||||||    
T  27045736 aagattcagaacgaaaacctactaccaaaaggtggtggtggtgatca 27045690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 179
Target Start/End: Original strand, 31355900 - 31355946
Alignment:
Q  133 aagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatca 179  Q
    ||||||||||| |||||||| |||||||||||||||||| |||||||    
T  31355900 aagattcagaacgaaaacctactaccaaaaggtggtggtggtgatca 31355946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 179
Target Start/End: Original strand, 36695062 - 36695108
Alignment:
Q  133 aagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatca 179  Q
    ||||||||||| |||||||| ||||||||||||||||||| ||||||    
T  36695062 aagattcagaacgaaaacctactaccaaaaggtggtggtaatgatca 36695108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 179
Target Start/End: Complemental strand, 37733464 - 37733418
Alignment:
Q  133 aagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatca 179  Q
    ||||||||||| |||||||| |||||||||||||||||| |||||||    
T  37733464 aagattcagaacgaaaacctactaccaaaaggtggtggtggtgatca 37733418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 1114793 - 1114748
Alignment:
Q  136 attcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaac 181  Q
    ||||| ||||| ||||| ||||||||||||||||||||||||||||    
T  1114793 attcaaaatgacaacctactaccaaaaggtggtggtagtgatcaac 1114748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 20559098 - 20559143
Alignment:
Q  136 attcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaac 181  Q
    ||||| ||||| ||||| ||||||||||||||||||||||||||||    
T  20559098 attcaaaatgacaacctactaccaaaaggtggtggtagtgatcaac 20559143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 105 - 186
Target Start/End: Original strand, 22153849 - 22153930
Alignment:
Q  105 tttgagcatggagaagaaaatgtttctcaagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaactctct 186  Q
    ||||||||| |||||||||||| | || ||||| |||||||||||| || | || |||||||| || |||||||||| ||||    
T  22153849 tttgagcattgagaagaaaatgctgctgaagatacagaatgaaaacatctttcccaaaggtggaggaagtgatcaaccctct 22153930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 221
Target Start/End: Original strand, 21517820 - 21517908
Alignment:
Q  133 aagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaactctctttgcagcacataatatttcttcattacttcatcac 221  Q
    ||||||||||| || || || |||||||||||||||||||||||||| |  ||| || ||||||  ||  | |||||||||||||||||    
T  21517820 aagattcagaacgagaatctgctaccaaaaggtggtggtagtgatcagccttctctggagcacaagatcctccttcattacttcatcac 21517908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 181
Target Start/End: Original strand, 34059281 - 34059329
Alignment:
Q  133 aagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaac 181  Q
    |||||||||||||| || || ||||||||||||||||| ||||||||||    
T  34059281 aagattcagaatgacaatctactaccaaaaggtggtggcagtgatcaac 34059329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 186
Target Start/End: Complemental strand, 24931736 - 24931686
Alignment:
Q  136 attcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaactctct 186  Q
    ||||| ||||| ||||| |||||||||||||||| ||||||||||| ||||    
T  24931736 attcaaaatgacaacctactaccaaaaggtggtgatagtgatcaaccctct 24931686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 179
Target Start/End: Original strand, 31445217 - 31445263
Alignment:
Q  133 aagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatca 179  Q
    ||||||||||| || ||||| ||||||||||||||||||| ||||||    
T  31445217 aagattcagaacgacaacctactaccaaaaggtggtggtaatgatca 31445263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 146; Significance: 8e-77; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 12 - 289
Target Start/End: Complemental strand, 17263093 - 17262816
Alignment:
Q  12 caaaggtggtataggtaacagcaagaccagtccctggaatggaatagttcataagtccatgttcaacaacaaaaagaaagatgcatattgtgatttgagc 111  Q
    |||||||||| ||||||||| |||||| || || ||||||| | |||| || ||||||||||||||||||| |||||||| ||| ||  |||||||||||    
T  17263093 caaaggtggtgtaggtaacaacaagactagcccttggaatgaagtagtccacaagtccatgttcaacaacacaaagaaaggtgcttacagtgatttgagc 17262994  T
Q  112 atggagaagaaaatgtttctcaagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaactctctttgcagcacataatatttcttcatt 211  Q
    ||||||||||| ||| |||| ||||||||||||||||| || |||||||||||||||||||||||||||| ||||||| |||| | ||| || | |||||    
T  17262993 atggagaagaagatgattctgaagattcagaatgaaaatcttctaccaaaaggtggtggtagtgatcaaccctctttggagcatagaattttccctcatt 17262894  T
Q  212 acttcatcacgaaggaaaaagcaaatgtgcccaagtacatcttcaagcacatgatcaaagagctaagggaaagccaag 289  Q
     |||||| |||||||||||||||||||||||||  |||||||||||||| ||||| |||||||| |||||||||||||    
T  17262893 tcttcataacgaaggaaaaagcaaatgtgcccagatacatcttcaagcatatgattaaagagctcagggaaagccaag 17262816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 12 - 289
Target Start/End: Original strand, 20378824 - 20379101
Alignment:
Q  12 caaaggtggtataggtaacagcaagaccagtccctggaatggaatagttcataagtccatgttcaacaacaaaaagaaagatgcatattgtgatttgagc 111  Q
    ||||||||||||||| |||||||||||||| |||||||||| | ||||||||||||||||||||||||||| |||||||| ||| || ||||| ||||||    
T  20378824 caaaggtggtataggaaacagcaagaccagcccctggaatgaagtagttcataagtccatgttcaacaacacaaagaaaggtgcttaatgtgacttgagc 20378923  T
Q  112 atggagaagaaaatgtttctcaagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaactctctttgcagcacataatatttcttcatt 211  Q
    ||||||||||| ||  || | |||||||||||| |||| || |||||||||||||||||||||||||||| ||||||| | |||| |||||| |||||||    
T  20378924 atggagaagaagatacttttgaagattcagaataaaaatctactaccaaaaggtggtggtagtgatcaaccctctttggatcacagaatattccttcatt 20379023  T
Q  212 acttcatcacgaaggaaaaagcaaatgtgcccaagtacatcttcaagcacatgatcaaagagctaagggaaagccaag 289  Q
     |||||| |||||||||||| ||||||||||||  |||||||| ||  | ||||| |||||||| |||||||||||||    
T  20379024 tcttcataacgaaggaaaaaacaaatgtgcccagatacatctttaaatatatgattaaagagctcagggaaagccaag 20379101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 67 - 281
Target Start/End: Complemental strand, 24648583 - 24648369
Alignment:
Q  67 tccatgttcaacaacaaaaagaaagatgcatattgtgatttgagcatggagaagaaaatgtttctcaagattcagaatgaaaacctcctaccaaaaggtg 166  Q
    ||||||||||||||||| |||||||  |  |||  ||||||||||||||||||||| ||| || | |||||||||||||| || || |||||||||||||    
T  24648583 tccatgttcaacaacaagaagaaaggagtttatgctgatttgagcatggagaagaagatgcttttgaagattcagaatgagaatctactaccaaaaggtg 24648484  T
Q  167 gtggtagtgatcaactctctttgcagcacataatatttcttcattacttcatcacgaaggaaaaagcaaatgtgcccaagtacatcttcaagcacatgat 266  Q
    |||||| ||||||||  ||| || |||||| |||  | ||||||| |||||||||    ||| |||| ||||||||||  |||||||||||||| |||||    
T  24648483 gtggtaatgatcaaccatctctggagcacagaatcctgcttcatttcttcatcacaggagaacaagctaatgtgcccagatacatcttcaagcatatgat 24648384  T
Q  267 caaagagctaaggga 281  Q
    |||||| || |||||    
T  24648383 caaagatcttaggga 24648369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 102 - 289
Target Start/End: Original strand, 22526933 - 22527120
Alignment:
Q  102 tgatttgagcatggagaagaaaatgtttctcaagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaactctctttgcagcacataata 201  Q
    ||||||||||||||||||||| ||| |||| |||||||||||||| ||  | |||| |||||||||||||||||||||||  ||| || |||||| |||     
T  22526933 tgatttgagcatggagaagaagatgcttctgaagattcagaatgagaatttactactaaaaggtggtggtagtgatcaaccatctctggagcacagaatc 22527032  T
Q  202 tttcttcattacttcatcacgaaggaaaaagcaaatgtgcccaagtacatcttcaagcacatgatcaaagagctaagggaaagccaag 289  Q
     | ||||||| |||||||||    ||| |||| ||||||||||  |||||||||||||  ||| |||||||||| ||||| |||||||    
T  22527033 ctgcttcatttcttcatcacaggagaacaagctaatgtgcccagatacatcttcaagcctatgttcaaagagcttagggacagccaag 22527120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 102 - 266
Target Start/End: Complemental strand, 19932759 - 19932595
Alignment:
Q  102 tgatttgagcatggagaagaaaatgtttctcaagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaactctctttgcagcacataata 201  Q
    |||| |||||||||| ||||| ||| | || |||||||||||||| || |||||||||||||||||||| ||||||||||  || ||| ||||||  ||     
T  19932759 tgatctgagcatggaaaagaagatgatgctgaagattcagaatgagaatctcctaccaaaaggtggtggcagtgatcaaccatccttggagcacaagatc 19932660  T
Q  202 tttcttcattacttcatcacgaaggaaaaagcaaatgtgcccaagtacatcttcaagcacatgat 266  Q
    |||||||||  ||||||||    ||||||||| |||||||| | ||||||||||| |||||||||    
T  19932659 tttcttcatctcttcatcaaaggggaaaaagctaatgtgccaaggtacatcttcaggcacatgat 19932595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 102 - 287
Target Start/End: Complemental strand, 22666700 - 22666515
Alignment:
Q  102 tgatttgagcatggagaagaaaatgtttctcaagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaactctctttgcagcacataata 201  Q
    |||| |||||||||| ||||||||| | || |||||||||||||| || || ||||||||||||||||| ||||||||||  || ||| ||||||  |||    
T  22666700 tgatatgagcatggaaaagaaaatgatgctgaagattcagaatgataatctgctaccaaaaggtggtggcagtgatcaaccatcattggagcacaagata 22666601  T
Q  202 tttcttcattacttcatcacgaaggaaaaagcaaatgtgcccaagtacatcttcaagcacatgatcaaagagctaagggaaagcca 287  Q
     ||||||||  |||||||||    |||  |||||||||||| |  |||||||||| |||||||||  || |||||||||| |||||    
T  22666600 cttcttcatctcttcatcactggtgaaccagcaaatgtgccaagatacatcttcaggcacatgattcaacagctaagggagagcca 22666515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 13 - 181
Target Start/End: Complemental strand, 16206291 - 16206123
Alignment:
Q  13 aaaggtggtataggtaacagcaagaccagtccctggaatggaatagttcataagtccatgttcaacaacaaaaagaaagatgcatattgtgatttgagca 112  Q
    ||||| |||||||| |||||||||||||| || ||||||| | | ||  |  | ||||||||||||| ||| ||||||   |  |||  |||||||||||    
T  16206291 aaaggaggtataggaaacagcaagaccagcccatggaatgaagtggtaaaccattccatgttcaacagcaagaagaaatgagtctatgctgatttgagca 16206192  T
Q  113 tggagaagaaaatgtttctcaagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaac 181  Q
    |||||||||| ||| |||| |||||||||||||| ||  | ||||||||||||||||||||||||||||    
T  16206191 tggagaagaagatgcttctgaagattcagaatgagaatttactaccaaaaggtggtggtagtgatcaac 16206123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 133 - 181
Target Start/End: Original strand, 23466571 - 23466619
Alignment:
Q  133 aagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaac 181  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  23466571 aagattcagaatgaaaacctactaccaaaaggtggtggtagtgatcaac 23466619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 30321967 - 30322012
Alignment:
Q  136 attcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaac 181  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||    
T  30321967 attcagaatgacaacctactaccaaaaggtggtggtagtgatcaac 30322012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 133 - 181
Target Start/End: Original strand, 25681238 - 25681286
Alignment:
Q  133 aagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaac 181  Q
    ||||| |||||||| ||||| ||||||||||||||||||||||||||||    
T  25681238 aagatccagaatgacaacctactaccaaaaggtggtggtagtgatcaac 25681286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 179
Target Start/End: Complemental strand, 23369546 - 23369500
Alignment:
Q  133 aagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatca 179  Q
    |||||||| |||||||| || ||||||||||||||||||||||||||    
T  23369546 aagattcaaaatgaaaatctgctaccaaaaggtggtggtagtgatca 23369500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 179
Target Start/End: Original strand, 32084973 - 32085019
Alignment:
Q  133 aagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatca 179  Q
    ||||||||||| |||||||| |||||||||||||||||| |||||||    
T  32084973 aagattcagaacgaaaacctactaccaaaaggtggtggtggtgatca 32085019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 19421936 - 19421891
Alignment:
Q  136 attcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaac 181  Q
    ||||| ||||| ||||| ||||||||||||||||||||||||||||    
T  19421936 attcaaaatgacaacctactaccaaaaggtggtggtagtgatcaac 19421891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 133 - 264
Target Start/End: Complemental strand, 18157116 - 18156985
Alignment:
Q  133 aagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaactctctttgcagcacataatatttcttcattacttcatcacgaaggaaaaag 232  Q
    |||||| |||| || || || |||||||||||||||||||||||||| |  ||| || |||||| |||  |||| || | |||||||||  | | | |||    
T  18157116 aagatttagaacgagaatctactaccaaaaggtggtggtagtgatcagccttctctggagcacaaaatccttctgcacttcttcatcactgatgtagaag 18157017  T
Q  233 caaatgtgcccaagtacatcttcaagcacatg 264  Q
    ||||||||||||  ||||| |||| |||||||    
T  18157016 caaatgtgcccagatacattttcaggcacatg 18156985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 181
Target Start/End: Complemental strand, 3836459 - 3836411
Alignment:
Q  133 aagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaac 181  Q
    |||||||| ||||| || ||  |||||||||||||||||||||||||||    
T  3836459 aagattcaaaatgataatctattaccaaaaggtggtggtagtgatcaac 3836411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 181
Target Start/End: Complemental strand, 19132305 - 19132233
Alignment:
Q  109 agcatggagaagaaaatgtttctcaagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaac 181  Q
    |||||||||||||||||| |||| ||||| || ||||| ||| || | || |||||||| || ||||||||||    
T  19132305 agcatggagaagaaaatgcttctgaagatccaaaatgagaacatctttcccaaaggtggaggaagtgatcaac 19132233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 146; Significance: 8e-77; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 12 - 289
Target Start/End: Original strand, 12954991 - 12955268
Alignment:
Q  12 caaaggtggtataggtaacagcaagaccagtccctggaatggaatagttcataagtccatgttcaacaacaaaaagaaagatgcatattgtgatttgagc 111  Q
    ||||| ||||||||||||||| ||||||||||| ||||||| | | ||| |  |||||||  |||| | ||  ||||||| |||||| ||||||||||||    
T  12954991 caaagatggtataggtaacagtaagaccagtccatggaatgaagtggttaaccagtccattgtcaatagcacgaagaaaggtgcatactgtgatttgagc 12955090  T
Q  112 atggagaagaaaatgtttctcaagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaactctctttgcagcacataatatttcttcatt 211  Q
    ||||||||||||||| |||| ||||||||||||||||| || ||||||||||||||||||  |||||||| ||| ||| |||||||||| ||||||||||    
T  12955091 atggagaagaaaatgcttctgaagattcagaatgaaaatcttctaccaaaaggtggtggtgatgatcaaccctcgttggagcacataatttttcttcatt 12955190  T
Q  212 acttcatcacgaaggaaaaagcaaatgtgcccaagtacatcttcaagcacatgatcaaagagctaagggaaagccaag 289  Q
    ||||| ||||| |||||||||| |||||||||||||||||||||||||||||||| |||||| | |||||||||||||    
T  12955191 acttcgtcacgtaggaaaaagccaatgtgcccaagtacatcttcaagcacatgattaaagagttcagggaaagccaag 12955268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 14 - 289
Target Start/End: Original strand, 14081490 - 14081765
Alignment:
Q  14 aaggtggtataggtaacagcaagaccagtccctggaatggaatagttcataagtccatgttcaacaacaaaaagaaagatgcatattgtgatttgagcat 113  Q
    ||||||| ||||| ||||| | |||||| |||||||| | | | |||||| ||||||||||||||||||||||||||| |||  |   ||| ||| ||||    
T  14081490 aaggtggaataggaaacagtaggaccagcccctggaaggaagtggttcatcagtccatgttcaacaacaaaaagaaaggtgctcacgttgacttgggcat 14081589  T
Q  114 ggagaagaaaatgtttctcaagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaactctctttgcagcacataatatttcttcattac 213  Q
    ||||||||| ||| || | |||||||||||||| || || |||||||||||||||||||||||||||| |||| || ||||||  ||||| |||||||||    
T  14081590 ggagaagaagatgcttttgaagattcagaatgagaatctactaccaaaaggtggtggtagtgatcaaccctctctggagcacaagatattccttcattac 14081689  T
Q  214 ttcatcacgaaggaaaaagcaaatgtgcccaagtacatcttcaagcacatgatcaaagagctaagggaaagccaag 289  Q
    |||||||||||||||| ||| ||||||||||  |||||||||| ||||||||| || ||||| |||||||||||||    
T  14081690 ttcatcacgaaggaaagagctaatgtgcccagatacatcttcaggcacatgattaaggagcttagggaaagccaag 14081765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 21 - 288
Target Start/End: Original strand, 17254027 - 17254294
Alignment:
Q  21 tataggtaacagcaagaccagtccctggaatggaatagttcataagtccatgttcaacaacaaaaagaaagatgcatattgtgatttgagcatggagaag 120  Q
    ||||||||||| |||||| ||||| |||||||   | ||| |  | ||||||||||||| || |||||||| |||||| |||||||||||||||||||||    
T  17254027 tataggtaacatcaagactagtccttggaatgaggtggttaaccattccatgttcaacagcacaaagaaaggtgcatactgtgatttgagcatggagaag 17254126  T
Q  121 aaaatgtttctcaagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaactctctttgcagcacataatatttcttcattacttcatca 220  Q
    |||||| | || ||||| |||||||| || |||||||||||||||||||||||||||||||  || ||| |||||| | | ||||| |||||||||||||    
T  17254127 aaaatgctcctgaagatccagaatgagaatctcctaccaaaaggtggtggtagtgatcaaccttccttggagcacaaagtgtttctccattacttcatca 17254226  T
Q  221 cgaaggaaaaagcaaatgtgcccaagtacatcttcaagcacatgatcaaagagctaagggaaagccaa 288  Q
    | ||||| |||||||||||| |||| |||||||| |  |||||||| |||||||| ||||||||||||    
T  17254227 caaaggagaaagcaaatgtgaccaaatacatcttaagacacatgattaaagagctcagggaaagccaa 17254294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 12 - 289
Target Start/End: Original strand, 17220450 - 17220727
Alignment:
Q  12 caaaggtggtataggtaacagcaagaccagtccctggaatggaatagttcataagtccatgttcaacaacaaaaagaaagatgcatattgtgatttgagc 111  Q
    ||||| |||| | ||||||| |||||  ||||||||||||| | | ||  | ||||| |||||||||||||  |||| || ||||||| |||| |||  |    
T  17220450 caaagatggtctgggtaacatcaagaagagtccctggaatgaagttgtcaacaagtcaatgttcaacaacacgaagagaggtgcatatagtgacttgtcc 17220549  T
Q  112 atggagaagaaaatgtttctcaagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaactctctttgcagcacataatatttcttcatt 211  Q
    |||||||||||| || | || ||||| |||||||| || ||||||||||||||||||||| | |||||||  ||| || |||||| | | ||||| ||||    
T  17220550 atggagaagaaactgctactgaagatacagaatgagaatctcctaccaaaaggtggtggtggagatcaaccttctatggagcacagagtgtttctccatt 17220649  T
Q  212 acttcatcacgaaggaaaaagcaaatgtgcccaagtacatcttcaagcacatgatcaaagagctaagggaaagccaag 289  Q
    |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  17220650 acttcatcacgaaggagaaagaaaatgtgcccaagtacatcttcaagcacatgatcaaagagctcagggaaagccaag 17220727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 133 - 179
Target Start/End: Original strand, 9990505 - 9990551
Alignment:
Q  133 aagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatca 179  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||||    
T  9990505 aagattcagaacgaaaacctactaccaaaaggtggtggtagtgatca 9990551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 133 - 179
Target Start/End: Original strand, 15223304 - 15223350
Alignment:
Q  133 aagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatca 179  Q
    ||||||||||||||||| || ||||||||||||||||||||||||||    
T  15223304 aagattcagaatgaaaatctgctaccaaaaggtggtggtagtgatca 15223350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 133 - 181
Target Start/End: Complemental strand, 4407908 - 4407860
Alignment:
Q  133 aagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaac 181  Q
    |||||||||||||| || || ||||||||||||||||||||||||||||    
T  4407908 aagattcagaatgacaatctactaccaaaaggtggtggtagtgatcaac 4407860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 133 - 181
Target Start/End: Original strand, 9387807 - 9387855
Alignment:
Q  133 aagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaac 181  Q
    |||||||||||||| || || ||||||||||||||||||||||||||||    
T  9387807 aagattcagaatgagaatctgctaccaaaaggtggtggtagtgatcaac 9387855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 133 - 181
Target Start/End: Original strand, 16667675 - 16667723
Alignment:
Q  133 aagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaac 181  Q
    |||||||| |||||||| || ||||||||||||||||||||||||||||    
T  16667675 aagattcataatgaaaatctgctaccaaaaggtggtggtagtgatcaac 16667723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 133 - 264
Target Start/End: Original strand, 1791096 - 1791227
Alignment:
Q  133 aagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaactctctttgcagcacataatatttcttcattacttcatcacgaaggaaaaag 232  Q
    ||||||||||| || || || |||||||||||||||||||||||||| |  ||| || ||||||  ||  | |||||||||||||||||    | | |||    
T  1791096 aagattcagaacgagaatctgctaccaaaaggtggtggtagtgatcagccttctctggagcacaagatcctccttcattacttcatcactggtgtagaag 1791195  T
Q  233 caaatgtgcccaagtacatcttcaagcacatg 264  Q
    ||||||||||||  ||||| |||| |||||||    
T  1791196 caaatgtgcccagatacattttcaggcacatg 1791227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 133 - 196
Target Start/End: Original strand, 9003009 - 9003072
Alignment:
Q  133 aagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaactctctttgcagcaca 196  Q
    |||||||||||||| || || ||| |||||||||||||||||||||| | ||||||| ||||||    
T  9003009 aagattcagaatgagaatctgctatcaaaaggtggtggtagtgatcagccctctttggagcaca 9003072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 179
Target Start/End: Original strand, 6497583 - 6497629
Alignment:
Q  133 aagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatca 179  Q
    ||||||||||| |||||||| ||||||||||||||||| ||||||||    
T  6497583 aagattcagaacgaaaacctactaccaaaaggtggtggcagtgatca 6497629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 179
Target Start/End: Complemental strand, 14584893 - 14584847
Alignment:
Q  133 aagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatca 179  Q
    |||||||||||||| || || ||||||||||||||||||||||||||    
T  14584893 aagattcagaatgataatctgctaccaaaaggtggtggtagtgatca 14584847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 179
Target Start/End: Original strand, 16388124 - 16388170
Alignment:
Q  133 aagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatca 179  Q
    |||||||||||||| ||||| ||||||||||||||||||| ||||||    
T  16388124 aagattcagaatgacaacctactaccaaaaggtggtggtaatgatca 16388170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 7801289 - 7801334
Alignment:
Q  136 attcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaac 181  Q
    ||||| ||||| ||||| ||||||||||||||||||||||||||||    
T  7801289 attcaaaatgataacctactaccaaaaggtggtggtagtgatcaac 7801334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 13074598 - 13074553
Alignment:
Q  136 attcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaac 181  Q
    ||||| ||||| ||||| ||||||||||||||||||||||||||||    
T  13074598 attcaaaatgacaacctactaccaaaaggtggtggtagtgatcaac 13074553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 17906772 - 17906817
Alignment:
Q  136 attcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaac 181  Q
    ||||| ||||| ||||| ||||||||||||||||||||||||||||    
T  17906772 attcaaaatgacaacctactaccaaaaggtggtggtagtgatcaac 17906817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 105 - 186
Target Start/End: Original strand, 20680407 - 20680488
Alignment:
Q  105 tttgagcatggagaagaaaatgtttctcaagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaactctct 186  Q
    ||||||||| |||||||||||| | || ||||| |||||||||||| || | || |||||||| || |||||||||| ||||    
T  20680407 tttgagcattgagaagaaaatgctgctgaagatacagaatgaaaacatctttcccaaaggtggaggaagtgatcaaccctct 20680488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 29468432 - 29468477
Alignment:
Q  136 attcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaac 181  Q
    ||||| ||||| ||||| ||||||||||||||||||||||||||||    
T  29468432 attcaaaatgacaacctactaccaaaaggtggtggtagtgatcaac 29468477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 14254496 - 14254541
Alignment:
Q  136 attcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaac 181  Q
    |||||||| ||||| || ||||||||||||||||||| ||||||||    
T  14254496 attcagaacgaaaatctactaccaaaaggtggtggtaatgatcaac 14254541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 287
Target Start/End: Complemental strand, 5196642 - 5196586
Alignment:
Q  231 agcaaatgtgcccaagtacatcttcaagcacatgatcaaagagctaagggaaagcca 287  Q
    |||||||||||  | ||||||||||| |||||||||  || ||||||||||||||||    
T  5196642 agcaaatgtgctaaggtacatcttcaggcacatgattcaacagctaagggaaagcca 5196586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 181
Target Start/End: Complemental strand, 5196740 - 5196692
Alignment:
Q  133 aagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaac 181  Q
    ||||||||||| || || || ||||||||||||||||| ||||||||||    
T  5196740 aagattcagaaggataatctgctaccaaaaggtggtggcagtgatcaac 5196692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 181
Target Start/End: Complemental strand, 37870086 - 37870014
Alignment:
Q  109 agcatggagaagaaaatgtttctcaagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaac 181  Q
    |||||||||||||| ||| |||| |||||||| ||||| ||| || | || |||||||| || ||||||||||    
T  37870086 agcatggagaagaagatgcttctgaagattcaaaatgagaacatctttcccaaaggtggaggaagtgatcaac 37870014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 181
Target Start/End: Complemental strand, 37878604 - 37878532
Alignment:
Q  109 agcatggagaagaaaatgtttctcaagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaac 181  Q
    |||||||||||||| ||| |||| |||||||| ||||| ||| || | || |||||||| || ||||||||||    
T  37878604 agcatggagaagaagatgcttctgaagattcaaaatgagaacatctttcccaaaggtggaggaagtgatcaac 37878532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0193 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 12 - 289
Target Start/End: Complemental strand, 6533 - 6256
Alignment:
Q  12 caaaggtggtataggtaacagcaagaccagtccctggaatggaatagttcataagtccatgttcaacaacaaaaagaaagatgcatattgtgatttgagc 111  Q
    |||||||| |||||  || ||||||||||| |||||||||| | | ||||| || ||||||||||||| || |||||||| ||| || ||||| || |||    
T  6533 caaaggtgttatagaaaatagcaagaccagcccctggaatgaagttgttcacaaatccatgttcaacatcacaaagaaaggtgcttactgtgacttaagc 6434  T
Q  112 atggagaagaaaatgtttctcaagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaactctctttgcagcacataatatttcttcatt 211  Q
    ||||||||||| ||| |||| |||||||||||||| || || ||| |||||||||||||||||||||||| |||| || |||||| ||||||  |||| |    
T  6433 atggagaagaagatgcttctaaagattcagaatgagaatctactatcaaaaggtggtggtagtgatcaaccctctctggagcacaaaatattcattcact 6334  T
Q  212 acttcatcacgaaggaaaaagcaaatgtgcccaagtacatcttcaagcacatgatcaaagagctaagggaaagccaag 289  Q
     ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||  |||||||||||||    
T  6333 tcttcatcacgaaggaaaaagcaaatgtgcccagatacatcttcaagcacatgatcaaagagcgcagggaaagccaag 6256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 120; Significance: 3e-61; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 12 - 287
Target Start/End: Complemental strand, 41561 - 41291
Alignment:
Q  12 caaaggtggtataggtaacagcaagaccagtccctggaatggaatagttcataagtccatgttcaacaacaaaaagaaagatgcatattgtgatttgagc 111  Q
    |||||||||||| |||||||||||||||      |||||||  |||||  || |||| ||||||||||  || ||||||| ||  |||   |||||||||    
T  41561 caaaggtggtattggtaacagcaagacct-----tggaatgagatagtcaattagtctatgttcaacagtaacaagaaaggtgtttatacagatttgagc 41467  T
Q  112 atggagaagaaaatgtttctcaagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaactctctttgcagcacataatatttcttcatt 211  Q
    ||||||||||||||| |||| || || ||||| ||| | ||||||||||||||||||||||||||||||| ||| ||| ||| |||||| ||||||||||    
T  41466 atggagaagaaaatgcttctaaaaatccagaaagaagatctcctaccaaaaggtggtggtagtgatcaaccctccttggagcgcataatttttcttcatt 41367  T
Q  212 acttcatcacgaaggaaaaagcaaatgtgcccaagtacatcttcaagcacatgatcaaagagctaagggaaagcca 287  Q
     ||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||| |||||||||||    
T  41366 tcttcatcacgaaggaaaaagcaaatgtgcccaagtacattttcaagcatatgattaaagagctcagggaaagcca 41291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0594 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: scaffold0594
Description:

Target: scaffold0594; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 12 - 289
Target Start/End: Original strand, 4185 - 4463
Alignment:
Q  12 caaaggtggtataggtaacagcaagaccagtccctggaatggaatagttcataagtccatgttcaacaacaaaaagaaagatgcatattgtgatttgagc 111  Q
    ||||||||||||||| ||||  || ||||  |||| ||||| | |||||||| || |||||||||||| ||  ||||||| ||| || ||||| ||||||    
T  4185 caaaggtggtataggaaacaagaaaaccaacccctagaatgaagtagttcatcaggccatgttcaacagcacgaagaaaggtgcttactgtgacttgagc 4284  T
Q  112 atggagaagaaaatgtttctcaagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaactctctttgcagcacataatatttcttcatt 211  Q
    ||||||||||| ||| |||| || ||||||||||| || || |||||||||||||||||||||||||||| ||||||| |||||| ||| ||  |||| |    
T  4285 atggagaagaagatgcttctgaacattcagaatgagaatctactaccaaaaggtggtggtagtgatcaaccctctttggagcacagaatgttcattcact 4384  T
Q  212 acttcatcacgaaggaaa-aagcaaatgtgcccaagtacatcttcaagcacatgatcaaagagctaagggaaagccaag 289  Q
     ||||||||||||||||| |||||||||||||||| ||||||||||  |||||||| |||||||| |||||||||||||    
T  4385 tcttcatcacgaaggaaagaagcaaatgtgcccaaatacatcttcagacacatgattaaagagctcagggaaagccaag 4463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 96; Significance: 6e-47; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 64 - 289
Target Start/End: Complemental strand, 24380730 - 24380508
Alignment:
Q  64 aagtccatgttcaacaacaaaaagaaagatgcatattgtgatttgagcatggagaagaaaatgtttctcaagattcagaatgaaaacctcctaccaaaag 163  Q
    ||||| |||||||| | || |||||||| |||||| ||||||||||||||| |||||||| || | || ||||| |||||||| || ||  |||||||||    
T  24380730 aagtcaatgttcaatagcacaaagaaaggtgcatactgtgatttgagcatgtagaagaaactgctcctgaagatccagaatgagaatcttttaccaaaag 24380631  T
Q  164 gtggtggtagtgatcaactctctttgcagcacataatatttcttcattacttcatcacgaaggaaaaagcaaatgtgcccaagtacatcttcaagcacat 263  Q
    ||||||||||| ||||||  |||||| |||||| | | |||||||||||||   |||||||||| |||| ||||||| |||||||| |||||||||||||    
T  24380630 gtggtggtagttatcaaccttctttggagcacagagtgtttcttcattact---tcacgaaggagaaagaaaatgtgtccaagtacgtcttcaagcacat 24380534  T
Q  264 gatcaaagagctaagggaaagccaag 289  Q
    ||||||||| || |||||||||||||    
T  24380533 gatcaaagaactcagggaaagccaag 24380508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 33 - 283
Target Start/End: Complemental strand, 18941537 - 18941287
Alignment:
Q  33 caagaccagtccctggaatggaatagttcataagtccatgttcaacaacaaaaagaaagatgcatattgtgatttgagcatggagaagaaaatgtttctc 132  Q
    ||||| ||| || ||||| | ||||||| || | |||||||||||||||| |||||||||||  ||  |||||||||||||||| |||||| || || |     
T  18941537 caagatcagcccatggaacgaaatagttaatcaatccatgttcaacaacacaaagaaagatgtttacagtgatttgagcatggaaaagaaagtgcttttg 18941438  T
Q  133 aagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaactctctttgcagcacataatatttcttcattacttcatcacgaaggaaaaag 232  Q
    || || || ||||||||||| ||||||||||||||| | ||||||||||  || ||| ||||||  || |||||||| | ||||||||  || |||||||    
T  18941437 aaaatccaaaatgaaaacctgctaccaaaaggtggtagcagtgatcaaccttcattggagcacaagatttttcttcacttcttcatcataaaagaaaaag 18941338  T
Q  233 caaatgtgcccaagtacatcttcaagcacatgatcaaagagctaagggaaa 283  Q
    | ||||||||||||||||| |||||||||||||| |||||||| |||||||    
T  18941337 ccaatgtgcccaagtacatattcaagcacatgattaaagagcttagggaaa 18941287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 133 - 179
Target Start/End: Complemental strand, 35256548 - 35256502
Alignment:
Q  133 aagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatca 179  Q
    |||||||||||||||||||| |||||||||||||||||| |||||||    
T  35256548 aagattcagaatgaaaacctactaccaaaaggtggtggtggtgatca 35256502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 133 - 179
Target Start/End: Complemental strand, 35267172 - 35267126
Alignment:
Q  133 aagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatca 179  Q
    |||||||||||||||||||| |||||||||||||||||| |||||||    
T  35267172 aagattcagaatgaaaacctactaccaaaaggtggtggtggtgatca 35267126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 28728518 - 28728563
Alignment:
Q  136 attcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaac 181  Q
    ||||| ||||| ||||| ||||||||||||||||||||||||||||    
T  28728518 attcaaaatgacaacctactaccaaaaggtggtggtagtgatcaac 28728563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 179
Target Start/End: Complemental strand, 26870722 - 26870676
Alignment:
Q  133 aagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatca 179  Q
    |||||||||||||| || || ||||||||||||||||| ||||||||    
T  26870722 aagattcagaatgacaatctactaccaaaaggtggtggcagtgatca 26870676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 186
Target Start/End: Complemental strand, 4213478 - 4213397
Alignment:
Q  105 tttgagcatggagaagaaaatgtttctcaagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaactctct 186  Q
    ||||||||| || ||||||||| | || ||||| |||||||||||| || | || |||||||| || |||||||||| ||||    
T  4213478 tttgagcattgaaaagaaaatgctgctgaagatccagaatgaaaacatctttcccaaaggtggaggaagtgatcaaccctct 4213397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 28376374 - 28376419
Alignment:
Q  136 attcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaac 181  Q
    |||||||| ||||| || ||||||||||||||||||| ||||||||    
T  28376374 attcagaacgaaaatctactaccaaaaggtggtggtaatgatcaac 28376419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 186
Target Start/End: Complemental strand, 40225879 - 40225798
Alignment:
Q  105 tttgagcatggagaagaaaatgtttctcaagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaactctct 186  Q
    ||||||||| |||||||||||| | || ||||| ||||| |||||| || | || |||||||| || |||||||||| ||||    
T  40225879 tttgagcattgagaagaaaatgctgctgaagatccagaacgaaaacatctttcccaaaggtggaggaagtgatcaaccctct 40225798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0676 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: scaffold0676
Description:

Target: scaffold0676; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 13 - 289
Target Start/End: Complemental strand, 1779 - 1503
Alignment:
Q  13 aaaggtggtataggtaacagcaagaccagtccctggaatggaatagttcataagtccatgttcaacaacaaaaagaaagatgcatattgtgatttgagca 112  Q
    |||||||||||||| |||||| | ||||| || ||||||| | | |||||| | ||||||||||||| || |||||||| |   || | ||| || || |    
T  1779 aaaggtggtataggaaacagctaaaccagcccttggaatgaagtggttcatcaatccatgttcaacagcacaaagaaaggtttttactatgacttaagta 1680  T
Q  113 tggagaagaaaatgtttctcaagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaactctctttgcagcacataatatttcttcatta 212  Q
    ||||||| || |||||||| |||||||| || || ||  | ||||||||||||||||||||||||||||  ||| || |||| |  ||||| ||||||||    
T  1679 tggagaataatatgtttctgaagattcaaaacgagaatttactaccaaaaggtggtggtagtgatcaaccttctctggagcataggatattccttcatta 1580  T
Q  213 cttcatcacgaaggaaaaagcaaatgtgcccaagtacatcttcaagcacatgatcaaagagctaagggaaagccaag 289  Q
    ||||||||||||||||| ||| ||||||||||  ||||| |||||||||||||| |||||||| ||||||| |||||    
T  1579 cttcatcacgaaggaaagagctaatgtgcccagatacatattcaagcacatgattaaagagctcagggaaatccaag 1503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 8e-40; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 112 - 283
Target Start/End: Complemental strand, 15143001 - 15142830
Alignment:
Q  112 atggagaagaaaatgtttctcaagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaactctctttgcagcacataatatttcttcatt 211  Q
    |||||||||||| || |||| ||||| |||||||| || || |||||||||||||||||| | |||||||  || ||| |||||| | | ||||||||||    
T  15143001 atggagaagaaactgcttctgaagatccagaatgagaatcttctaccaaaaggtggtggtggagatcaaccttccttggagcacagagtgtttcttcatt 15142902  T
Q  212 acttcatcacgaaggaaaaagcaaatgtgcccaagtacatcttcaagcacatgatcaaagagctaagggaaa 283  Q
    ||||||| || |||||||||||||||||||||||||| || |||||||| |||||||||||||| |||||||    
T  15142901 acttcattacaaaggaaaaagcaaatgtgcccaagtatattttcaagcagatgatcaaagagcttagggaaa 15142830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 214 - 287
Target Start/End: Original strand, 19615608 - 19615681
Alignment:
Q  214 ttcatcacgaaggaaaaagcaaatgtgcccaagtacatcttcaagcacatgatcaaagagctaagggaaagcca 287  Q
    ||||| ||||||||||||||||||||||| |  |||||||||| ||| ||||| |||||||| |||||||||||    
T  19615608 ttcataacgaaggaaaaagcaaatgtgccaagatacatcttcaggcatatgattaaagagctcagggaaagcca 19615681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 200
Target Start/End: Complemental strand, 19574643 - 19574576
Alignment:
Q  133 aagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaactctctttgcagcacataat 200  Q
    |||||||||||||| || || ||||||||||||||||||||||||||||  ||| || ||||||||||    
T  19574643 aagattcagaatgacaatctactaccaaaaggtggtggtagtgatcaaccgtctctggagcacataat 19574576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 133 - 179
Target Start/End: Complemental strand, 24643936 - 24643890
Alignment:
Q  133 aagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatca 179  Q
    |||||||||||||||||||| |||||||||||||||||| |||||||    
T  24643936 aagattcagaatgaaaacctactaccaaaaggtggtggtggtgatca 24643890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 133 - 181
Target Start/End: Complemental strand, 3376558 - 3376510
Alignment:
Q  133 aagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaac 181  Q
    |||||||||||||| || || ||||||||||||||||||||||||||||    
T  3376558 aagattcagaatgagaatctgctaccaaaaggtggtggtagtgatcaac 3376510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 179
Target Start/End: Complemental strand, 10294300 - 10294254
Alignment:
Q  133 aagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatca 179  Q
    ||||||||||| ||||| || ||||||||||||||||||||||||||    
T  10294300 aagattcagaacgaaaatctgctaccaaaaggtggtggtagtgatca 10294254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 179
Target Start/End: Complemental strand, 11518735 - 11518689
Alignment:
Q  133 aagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatca 179  Q
    ||||||||||||||||| || ||| ||||||||||||||||||||||    
T  11518735 aagattcagaatgaaaatctgctatcaaaaggtggtggtagtgatca 11518689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 179
Target Start/End: Complemental strand, 11539658 - 11539612
Alignment:
Q  133 aagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatca 179  Q
    ||||||||||| ||||| || ||||||||||||||||||||||||||    
T  11539658 aagattcagaacgaaaatctgctaccaaaaggtggtggtagtgatca 11539612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 179
Target Start/End: Original strand, 18759736 - 18759782
Alignment:
Q  133 aagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatca 179  Q
    ||||||||||| |||||||  ||||||||||||||||||||||||||    
T  18759736 aagattcagaacgaaaaccgactaccaaaaggtggtggtagtgatca 18759782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 179
Target Start/End: Original strand, 39517457 - 39517503
Alignment:
Q  133 aagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatca 179  Q
    ||||||||||| ||||| || ||||||||||||||||||||||||||    
T  39517457 aagattcagaacgaaaatctgctaccaaaaggtggtggtagtgatca 39517503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 179
Target Start/End: Complemental strand, 49511148 - 49511102
Alignment:
Q  133 aagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatca 179  Q
    ||||||||||| |||||||| |||||||||||||||||| |||||||    
T  49511148 aagattcagaacgaaaacctactaccaaaaggtggtggtggtgatca 49511102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 179
Target Start/End: Original strand, 55752495 - 55752541
Alignment:
Q  133 aagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatca 179  Q
    ||||||||||| |||||||| |||||||||||||||||| |||||||    
T  55752495 aagattcagaacgaaaacctactaccaaaaggtggtggtggtgatca 55752541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 105 - 186
Target Start/End: Complemental strand, 16259506 - 16259425
Alignment:
Q  105 tttgagcatggagaagaaaatgtttctcaagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaactctct 186  Q
    ||||||||| |||||||||||| | || ||||| |||||||||||| || | || |||||||| || |||||||||| ||||    
T  16259506 tttgagcattgagaagaaaatgctgctgaagatacagaatgaaaacatctttcccaaaggtggaggaagtgatcaaccctct 16259425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 264
Target Start/End: Original strand, 15471743 - 15471892
Alignment:
Q  115 gagaagaaaatgtttctcaagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaactctctttgcagcacataatatttcttcattact 214  Q
    ||||||| ||||||  | |||||||| ||||  |||||  ||||||| |||||  | |||||||||| ||| ||  ||||||  ||||| || |||   |    
T  15471743 gagaagagaatgttgttgaagattcaaaatgctaacctgttaccaaatggtgggagcagtgatcaaccctccttagagcacaagatattcctccatatgt 15471842  T
Q  215 tcatcacgaaggaaaaagcaaatgtgcccaagtacatcttcaagcacatg 264  Q
    ||||||| |||||| | ||||| ||||| |||||||| ||||||||||||    
T  15471843 tcatcacaaaggaatatgcaaacgtgcctaagtacatgttcaagcacatg 15471892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0396 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: scaffold0396
Description:

Target: scaffold0396; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 67 - 284
Target Start/End: Original strand, 10718 - 10935
Alignment:
Q  67 tccatgttcaacaacaaaaagaaagatgcatattgtgatttgagcatggagaagaaaatgtttctcaagattcagaatgaaaacctcctaccaaaaggtg 166  Q
    ||||||||||||||||| ||||| | ||| ||   ||| |||||||||||||||||  || || | |||||| |||| || || |  |||||||||||||    
T  10718 tccatgttcaacaacaacaagaagggtgcttacgctgacttgagcatggagaagaagttgcttatgaagatttagaacgagaatcaactaccaaaaggtg 10817  T
Q  167 gtggtagtgatcaactctctttgcagcacataatatttcttcattacttcatcacgaaggaaaaagcaaatgtgcccaagtacatcttcaagcacatgat 266  Q
    |||||||||||||||  ||| |  |||||| ||| |||||||||| ||||||| |  |||||||||| ||||||||||  ||||||||||| || |||||    
T  10818 gtggtagtgatcaaccatctctagagcacaaaatctttcttcatttcttcatctcagaggaaaaagctaatgtgcccagatacatcttcaatcatatgat 10917  T
Q  267 caaagagctaagggaaag 284  Q
    ||||||||||||||||||    
T  10918 caaagagctaagggaaag 10935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 5 - 289
Target Start/End: Original strand, 8937 - 9210
Alignment:
Q  5 ggagtagcaaaggtggtataggtaacagcaagaccagtccctggaatggaatagttcataagtccatgttcaacaacaaaaagaaagatgcatattgtga 104  Q
    ||||| |||||||||||||||| |||| ||| ||||| || ||||||| |   |||||| | |||||||| |||| || |||||||| ||| ||   |||    
T  8937 ggagttgcaaaggtggtataggaaacaacaaaaccagcccttggaatgaagaggttcatcaatccatgtttaacagcacaaagaaaggtgcttacgctga 9036  T
Q  105 tttgagcatggagaagaaaatgtttctcaagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaactctctttgcagcacataatattt 204  Q
     ||||||||||||||||| ||| |||| |||||||| || || || || ||||||||||||||||||||||||||||        | |||||| |||||     
T  9037 cttgagcatggagaagaagatgcttctgaagattcaaaacgagaatctactaccaaaaggtggtggtagtgatcaac--------ctgcacatgatattc 9128  T
Q  205 cttcattacttcatcacgaaggaaaaagcaaatgtgcccaagtacatcttcaagcacatgatcaaagagctaagggaaagccaag 289  Q
    |||||||| |||||||||||||||| ||    ||||||||  |||||||||| ||||||||| || ||||| |||||||| ||||    
T  9129 cttcattatttcatcacgaaggaaagag---ttgtgcccagatacatcttcaggcacatgattaaggagcttagggaaagacaag 9210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 7e-34; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 112 - 289
Target Start/End: Complemental strand, 20932886 - 20932709
Alignment:
Q  112 atggagaagaaaatgtttctcaagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaactctctttgcagcacataatatttcttcatt 211  Q
    |||||||||||| || |||| ||||| |||||||| || || |||||||||||||||||| | |||||||  || ||| ||||||   | ||||||||||    
T  20932886 atggagaagaaactgcttctgaagatccagaatgagaatcttctaccaaaaggtggtggtggagatcaaccttccttggagcacagggtgtttcttcatt 20932787  T
Q  212 acttcatcacgaaggaaaaagcaaatgtgcccaagtacatcttcaagcacatgatcaaagagctaagggaaagccaag 289  Q
    ||||||| || |||||||||| ||||||||||||| |||| |||||||||||||| |||||||| || ||||| ||||    
T  20932786 acttcattacaaaggaaaaagaaaatgtgcccaagcacattttcaagcacatgattaaagagcttagagaaagtcaag 20932709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 46 - 287
Target Start/End: Complemental strand, 36137698 - 36137457
Alignment:
Q  46 tggaatggaatagttcataagtccatgttcaacaacaaaaagaaagatgcatattgtgatttgagcatggagaagaaaatgtttctcaagattcagaatg 145  Q
    ||||||| |||||||| | ||||||||||||| | || | |||| | ||  || | ||| ||||||||| ||||||||||| |||| |||||||||||||    
T  36137698 tggaatgaaatagttcgtcagtccatgttcaatagcacagagaagggtgtctactctgacttgagcatgcagaagaaaatgcttctgaagattcagaatg 36137599  T
Q  146 aaaacctcctaccaaaaggtggtggtagtgatcaactctctttgcagcacataatatttcttcattacttcatcacgaaggaaaaagcaaatgtgcccaa 245  Q
    | ||  | |||||||| || ||| | ||||||||||  ||| || ||||||  ||||| ||||||| ||||||||  ||||||| ||| ||||||||||     
T  36137598 agaatattctaccaaagggaggtagcagtgatcaaccttctctggagcacaggatattccttcatttcttcatcagtaaggaaatagctaatgtgcccag 36137499  T
Q  246 gtacatcttcaagcacatgatcaaagagctaagggaaagcca 287  Q
     |||||||||||| | |||||||||||||| |||||||||||    
T  36137498 atacatcttcaagtatatgatcaaagagctcagggaaagcca 36137457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 133 - 265
Target Start/End: Original strand, 21131598 - 21131730
Alignment:
Q  133 aagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaactctctttgcagcacataatatttcttcattacttcatcacgaaggaaaaag 232  Q
    ||||||||||||| ||||||  |||||||||||||| | |||||||||| |||  |  ||||||  ||||| ||||||   |||||||  | |||| | |    
T  21131598 aagattcagaatgcaaacctgttaccaaaaggtggtagcagtgatcaaccctccctagagcacaagatattccttcatctgttcatcagaagggaatatg 21131697  T
Q  233 caaatgtgcccaagtacatcttcaagcacatga 265  Q
    |||||||||| ||||| || |||||||||||||    
T  21131698 caaatgtgcctaagtatatgttcaagcacatga 21131730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 150948 - 150993
Alignment:
Q  136 attcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaac 181  Q
    ||||| ||||| ||||| ||||||||||||||||||||||||||||    
T  150948 attcaaaatgacaacctactaccaaaaggtggtggtagtgatcaac 150993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 105 - 186
Target Start/End: Complemental strand, 21867232 - 21867151
Alignment:
Q  105 tttgagcatggagaagaaaatgtttctcaagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaactctct 186  Q
    ||||||||| |||||||||||||| || ||||| |||||||||||| || | || |||||| | || |||||||||| ||||    
T  21867232 tttgagcattgagaagaaaatgttgctgaagatccagaatgaaaacatctttcccaaaggttgaggaagtgatcaaccctct 21867151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 26559910 - 26559865
Alignment:
Q  136 attcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaac 181  Q
    ||||| ||||| ||||| ||||||||||||||||||||||||||||    
T  26559910 attcaaaatgacaacctactaccaaaaggtggtggtagtgatcaac 26559865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 105 - 180
Target Start/End: Original strand, 12620409 - 12620484
Alignment:
Q  105 tttgagcatggagaagaaaatgtttctcaagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaa 180  Q
    ||||||||| |||||||||||| | || ||||| |||||||||||| || | || |||||||| || |||||||||    
T  12620409 tttgagcattgagaagaaaatgctgctgaagatccagaatgaaaacatctttcccaaaggtggaggaagtgatcaa 12620484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 136 - 179
Target Start/End: Complemental strand, 21164706 - 21164663
Alignment:
Q  136 attcagaatgaaaacctcctaccaaaaggtggtggtagtgatca 179  Q
    |||||||| ||||| || ||||||||||||||||||||||||||    
T  21164706 attcagaacgaaaatctactaccaaaaggtggtggtagtgatca 21164663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 181
Target Start/End: Original strand, 22461278 - 22461326
Alignment:
Q  133 aagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaac 181  Q
    ||||| || ||||||||||| ||||||||||||||||| | ||||||||    
T  22461278 aagatacaaaatgaaaacctgctaccaaaaggtggtggcactgatcaac 22461326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0324 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold0324
Description:

Target: scaffold0324; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 101 - 281
Target Start/End: Complemental strand, 11194 - 11014
Alignment:
Q  101 gtgatttgagcatggagaagaaaatgtttctcaagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaactctctttgcagcacataat 200  Q
    |||| ||||| |||||||||||| |  |||| |||||||||||||| || || | ||||||| |||||||| | |||||||  |||||| |||||| |||    
T  11194 gtgacttgagtatggagaagaaactacttctgaagattcagaatgagaatcttcaaccaaaatgtggtggtggagatcaaccttctttggagcacaaaat 11095  T
Q  201 atttcttcattacttcatcacgaaggaaaaagcaaatgtgcccaagtacatcttcaagcacatgatcaaagagctaaggga 281  Q
     |||||||||||||| || || |||||||||||||||||||||| ||| || |||||||||||||| ||||| || |||||    
T  11094 gtttcttcattactttattacaaaggaaaaagcaaatgtgcccaggtatattttcaagcacatgattaaagaacttaggga 11014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 4e-26; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 106 - 242
Target Start/End: Original strand, 13131565 - 13131701
Alignment:
Q  106 ttgagcatggagaagaaaatgtttctcaagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaactctctttgcagcacataatatttc 205  Q
    ||||||||||||||||| ||  | || |||||||| ||||| || || ||||||||||||||||||||||||||||  |||  | |||||| ||| || |    
T  13131565 ttgagcatggagaagaagattctcctgaagattcaaaatgagaatcttctaccaaaaggtggtggtagtgatcaaccatctcaggagcacagaatcttcc 13131664  T
Q  206 ttcattacttcatcacgaaggaaaaagcaaatgtgcc 242  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  13131665 ttcatttcttcatcacgaaggaaagagcaaatgtgcc 13131701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 105 - 181
Target Start/End: Complemental strand, 4215617 - 4215541
Alignment:
Q  105 tttgagcatggagaagaaaatgtttctcaagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaac 181  Q
    ||||||||| |||||||||||||| || ||||| |||||||||||| || | || |||||||| || ||||||||||    
T  4215617 tttgagcattgagaagaaaatgttgctgaagatacagaatgaaaacatctttcccaaaggtggaggaagtgatcaac 4215541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 179
Target Start/End: Complemental strand, 1991133 - 1991087
Alignment:
Q  133 aagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatca 179  Q
    ||||||||||| |||||||| |||||||||||||||||| |||||||    
T  1991133 aagattcagaacgaaaacctactaccaaaaggtggtggtggtgatca 1991087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 179
Target Start/End: Complemental strand, 18432127 - 18432081
Alignment:
Q  133 aagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatca 179  Q
    ||||||||||| ||||| || ||||||||||||||||||||||||||    
T  18432127 aagattcagaacgaaaatctgctaccaaaaggtggtggtagtgatca 18432081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 105 - 186
Target Start/End: Complemental strand, 170497 - 170416
Alignment:
Q  105 tttgagcatggagaagaaaatgtttctcaagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaactctct 186  Q
    ||||||||| |||||||||||| | || ||||| |||||||||||| || | || |||||||| || |||||||||| ||||    
T  170497 tttgagcattgagaagaaaatgctgctgaagatccagaatgaaaacatctttcccaaaggtggaggaagtgatcaaccctct 170416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 105 - 186
Target Start/End: Complemental strand, 8620971 - 8620890
Alignment:
Q  105 tttgagcatggagaagaaaatgtttctcaagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaactctct 186  Q
    ||||||||| |||||||||||| | || ||||| |||||||||||| || | || |||||||| || |||||||||| ||||    
T  8620971 tttgagcattgagaagaaaatgctgctgaagatccagaatgaaaacatctttcccaaaggtggaggaagtgatcaaccctct 8620890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 9163154 - 9163109
Alignment:
Q  136 attcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaac 181  Q
    ||||| ||||| ||||| ||||||||||||||||||||||||||||    
T  9163154 attcaaaatgacaacctactaccaaaaggtggtggtagtgatcaac 9163109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 103 - 256
Target Start/End: Complemental strand, 13660279 - 13660127
Alignment:
Q  103 gatttgagcatggagaagaaaatgtttctcaagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaactctctttgcagcacataatat 202  Q
    ||||||||||| |||||||||||| | || ||||| || ||||| ||  ||||||||||||| |||||| | |||||||  || ||  | || | | |||    
T  13660279 gatttgagcatcgagaagaaaatgctcctgaagatacaaaatgagaatttcctaccaaaaggaggtggtggagatcaaccgtcatt-aatcatagagtat 13660181  T
Q  203 ttcttcattacttcatcacgaaggaaaaagcaaatgtgcccaagtacatcttca 256  Q
    |||| |||| |||||| || | ||| ||||||||| |||| |||||||||||||    
T  13660180 ttctgcatttcttcatgaccatggagaaagcaaatatgccaaagtacatcttca 13660127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 105 - 186
Target Start/End: Original strand, 17957407 - 17957488
Alignment:
Q  105 tttgagcatggagaagaaaatgtttctcaagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaactctct 186  Q
    ||||||||| |||||||||||| | || ||||| |||||||||||| || | || |||||||| || |||||||||| ||||    
T  17957407 tttgagcattgagaagaaaatgctgctgaagatacagaatgaaaacatctttcccaaaggtggaggaagtgatcaaccctct 17957488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 105 - 186
Target Start/End: Complemental strand, 22092751 - 22092670
Alignment:
Q  105 tttgagcatggagaagaaaatgtttctcaagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaactctct 186  Q
    ||||||||| |||||||||||| | || ||||| |||||||||||| || | || |||||||| || |||||||||| ||||    
T  22092751 tttgagcattgagaagaaaatgctgctgaagatccagaatgaaaacatctttcccaaaggtggaggaagtgatcaaccctct 22092670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 136 - 179
Target Start/End: Original strand, 25208357 - 25208400
Alignment:
Q  136 attcagaatgaaaacctcctaccaaaaggtggtggtagtgatca 179  Q
    |||||||| ||||| || ||||||||||||||||||||||||||    
T  25208357 attcagaacgaaaatctactaccaaaaggtggtggtagtgatca 25208400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 181
Target Start/End: Complemental strand, 14137236 - 14137188
Alignment:
Q  133 aagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaac 181  Q
    ||||||||||| || || || ||||||||||||||||| ||||||||||    
T  14137236 aagattcagaacgagaatctgctaccaaaaggtggtggcagtgatcaac 14137188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0379 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0379
Description:

Target: scaffold0379; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 13 - 289
Target Start/End: Complemental strand, 1305 - 1029
Alignment:
Q  13 aaaggtggtataggtaacagcaagaccagtccctggaatggaatagttcataagtccatgttcaacaacaaaaagaaagatgcatattgtgatttgagca 112  Q
    ||||| || ||||||||||||||||||||  | ||||||| | | ||  || | || |||||||||| ||| ||||| | ||  ||   ||| |||||||    
T  1305 aaaggaggaataggtaacagcaagaccagctcttggaatgaagtggtcaatcaatctatgttcaacagcaacaagaagggtgtctacgctgacttgagca 1206  T
Q  113 tggagaagaaaatgtttctcaagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaactctctttgcagcacataatatttcttcatta 212  Q
    |||||||||| ||| | || |||||||||||||| || || |||||||||||||||||| || ||||||  ||| |  |||||||||| ||  | ||||     
T  1205 tggagaagaagatgctcctgaagattcagaatgagaatctactaccaaaaggtggtggttgttatcaaccatctcttgagcacataatcttcatacattt 1106  T
Q  213 cttcatcacgaaggaaaaagcaaatgtgcccaagtacatcttcaagcacatgatcaaagagctaagggaaagccaag 289  Q
     |||||||| |  || | ||||||||||||||  ||| ||||||||||||||||  || |||| ||||||| |||||    
T  1105 tttcatcactagagagagagcaaatgtgcccagatacttcttcaagcacatgattcaacagcttagggaaatccaag 1029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0810 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0810
Description:

Target: scaffold0810; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 102 - 273
Target Start/End: Original strand, 1098 - 1269
Alignment:
Q  102 tgatttgagcatggagaagaaaatgtttctcaagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaactctctttgcagcacataata 201  Q
    |||||| |||||||||||||| ||| |||| |||||||||||||| || ||   |||||||||||| |||| ||||||||  |||||| |||| | |||     
T  1098 tgatttaagcatggagaagaagatgcttctgaagattcagaatgagaatctaaaaccaaaaggtggaggtactgatcaaccatctttggagcaaagaatt 1197  T
Q  202 tttcttcattacttcatcacgaaggaaaaagcaaatgtgcccaagtacatcttcaagcacatgatcaaagag 273  Q
     | | ||| | |||||||||    ||| |||| ||||||||||  |||||||||||||| ||||||||||||    
T  1198 ctgcctcacttcttcatcacaggagaacaagctaatgtgcccagatacatcttcaagcatatgatcaaagag 1269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0863 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0863
Description:

Target: scaffold0863; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 165 - 263
Target Start/End: Original strand, 4682 - 4780
Alignment:
Q  165 tggtggtagtgatcaactctctttgcagcacataatatttcttcattacttcatcacgaaggaaaaagcaaatgtgcccaagtacatcttcaagcacat 263  Q
    |||||||||||||||||  ||| || |||||||||| |||||||||| ||||||||| ||||||| ||| ||||||||||  |||||| ||| ||||||    
T  4682 tggtggtagtgatcaaccatctctggagcacataatctttcttcatttcttcatcacaaaggaaagagctaatgtgcccagatacatcatcaggcacat 4780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0863; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 12 - 122
Target Start/End: Original strand, 4569 - 4679
Alignment:
Q  12 caaaggtggtataggtaacagcaagaccagtccctggaatggaatagttcataagtccatgttcaacaacaaaaagaaagatgcatattgtgatttgagc 111  Q
    |||| |||||||||| |||| ||| ||||| || ||||||| | | |||||| | |||||||||||||||| |||||||| ||| ||   ||| ||||||    
T  4569 caaaagtggtataggaaacaacaaaaccagcccttggaatgaagtggttcatcaatccatgttcaacaacacaaagaaaggtgcttacgctgacttgagc 4668  T
Q  112 atggagaagaa 122  Q
    |||||||||||    
T  4669 atggagaagaa 4679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1465 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold1465
Description:

Target: scaffold1465; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 133 - 181
Target Start/End: Complemental strand, 1167 - 1119
Alignment:
Q  133 aagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaac 181  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  1167 aagattcagaatgaaaacctactaccaaaaggtggtggtagtgatcaac 1119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 110 - 284
Target Start/End: Complemental strand, 16879755 - 16879581
Alignment:
Q  110 gcatggagaagaaaatgtttctcaagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaactctctttgcagcacataatatttcttca 209  Q
    ||||||| ||||| ||| | || |||||||| ||||| ||||| |||||||||||| ||||||||||| |||  || ||| |||||| ||| ||||| ||    
T  16879755 gcatggaaaagaagatgatgctgaagattcaaaatgacaacctgctaccaaaaggtcgtggtagtgatgaaccatccttggagcacaaaatctttctcca 16879656  T
Q  210 ttacttcatcacgaaggaaaaagcaaatgtgcccaagtacatcttcaagcacatgatcaaagagctaagggaaag 284  Q
    |  |||||||||    |||  | |||||||||||| ||| ||||| | |||||||||  || |||||||||||||    
T  16879655 tctcttcatcaccggtgaaccaacaaatgtgcccaggtatatctttaggcacatgattcaacagctaagggaaag 16879581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 133 - 179
Target Start/End: Original strand, 18831546 - 18831592
Alignment:
Q  133 aagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatca 179  Q
    ||||||||||||||||| || ||||||||||||||||||||||||||    
T  18831546 aagattcagaatgaaaatctgctaccaaaaggtggtggtagtgatca 18831592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 133 - 179
Target Start/End: Complemental strand, 26037166 - 26037120
Alignment:
Q  133 aagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatca 179  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||||    
T  26037166 aagattcagaacgaaaacctactaccaaaaggtggtggtagtgatca 26037120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 133 - 181
Target Start/End: Original strand, 18922666 - 18922714
Alignment:
Q  133 aagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaac 181  Q
    |||||||||||||| || || ||||||||||||||||||||||||||||    
T  18922666 aagattcagaatgacaatctactaccaaaaggtggtggtagtgatcaac 18922714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 133 - 181
Target Start/End: Complemental strand, 25797417 - 25797369
Alignment:
Q  133 aagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaac 181  Q
    |||||||||||||| || || ||||||||||||||||||||||||||||    
T  25797417 aagattcagaatgacaatctactaccaaaaggtggtggtagtgatcaac 25797369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 105 - 181
Target Start/End: Original strand, 32969165 - 32969241
Alignment:
Q  105 tttgagcatggagaagaaaatgtttctcaagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaac 181  Q
    ||||||||| |||||||||||||| || ||||| |||||||||||| || | || |||||||| || ||||||||||    
T  32969165 tttgagcattgagaagaaaatgttgctgaagatccagaatgaaaacatctttcccaaaggtggaggaagtgatcaac 32969241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 179
Target Start/End: Complemental strand, 4634476 - 4634430
Alignment:
Q  133 aagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatca 179  Q
    ||||||||||| |||||||| ||||||||||||||||||| ||||||    
T  4634476 aagattcagaacgaaaacctactaccaaaaggtggtggtaatgatca 4634430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 179
Target Start/End: Complemental strand, 13916813 - 13916767
Alignment:
Q  133 aagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatca 179  Q
    ||||||||||| ||||| || ||||||||||||||||||||||||||    
T  13916813 aagattcagaacgaaaatctgctaccaaaaggtggtggtagtgatca 13916767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 179
Target Start/End: Complemental strand, 21123045 - 21122999
Alignment:
Q  133 aagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatca 179  Q
    ||||||||||||||||| || ||||||||||||||||| ||||||||    
T  21123045 aagattcagaatgaaaatctgctaccaaaaggtggtggcagtgatca 21122999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 179
Target Start/End: Complemental strand, 27345296 - 27345250
Alignment:
Q  133 aagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatca 179  Q
    ||||||||||| |||||||| |||||||||||||||||| |||||||    
T  27345296 aagattcagaacgaaaacctactaccaaaaggtggtggtggtgatca 27345250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 179
Target Start/End: Complemental strand, 27406036 - 27405990
Alignment:
Q  133 aagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatca 179  Q
    ||||||||||| |||||||| |||||||||||||||||| |||||||    
T  27406036 aagattcagaacgaaaacctactaccaaaaggtggtggtggtgatca 27405990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 179
Target Start/End: Original strand, 32308298 - 32308344
Alignment:
Q  133 aagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatca 179  Q
    ||||||||||| |||||||| ||||||||||||||||||| ||||||    
T  32308298 aagattcagaacgaaaacctactaccaaaaggtggtggtaatgatca 32308344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 12361657 - 12361612
Alignment:
Q  136 attcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaac 181  Q
    ||||| ||||| ||||| ||||||||||||||||||||||||||||    
T  12361657 attcaaaatgacaacctactaccaaaaggtggtggtagtgatcaac 12361612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 105 - 186
Target Start/End: Complemental strand, 12858504 - 12858423
Alignment:
Q  105 tttgagcatggagaagaaaatgtttctcaagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaactctct 186  Q
    ||||||||| |||||||||||| | || ||||| |||||||||||| || | || |||||||| || |||||||||| ||||    
T  12858504 tttgagcattgagaagaaaatgctgctgaagatccagaatgaaaacatctttcccaaaggtggaggaagtgatcaaccctct 12858423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 20037141 - 20037186
Alignment:
Q  136 attcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaac 181  Q
    ||||| ||||| ||||| ||||||||||||||||||||||||||||    
T  20037141 attcaaaatgacaacctactaccaaaaggtggtggtagtgatcaac 20037186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 115 - 264
Target Start/End: Complemental strand, 22379607 - 22379458
Alignment:
Q  115 gagaagaaaatgtttctcaagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaactctctttgcagcacataatatttcttcattact 214  Q
    ||||||| ||||||  | |||||||| ||||  |||||  |||||||||||||| | |||||||||| ||| ||  ||||||  ||||| || |||   |    
T  22379607 gagaagagaatgttgttgaagattcaaaatgctaacctgttaccaaaaggtggtagcagtgatcaaccctccttagagcacaagatattcctccatctgt 22379508  T
Q  215 tcatcacgaaggaaaaagcaaatgtgcccaagtacatcttcaagcacatg 264  Q
    ||||||| |||||| | | ||| ||||| |||||||| ||||||||||||    
T  22379507 tcatcacaaaggaatatgtaaacgtgcctaagtacatgttcaagcacatg 22379458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 181
Target Start/End: Complemental strand, 22289543 - 22289495
Alignment:
Q  133 aagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaac 181  Q
    |||||| |||||||||| ||  |||||||||||||||||||||||||||    
T  22289543 aagatttagaatgaaaatctgttaccaaaaggtggtggtagtgatcaac 22289495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 181
Target Start/End: Complemental strand, 22808851 - 22808803
Alignment:
Q  133 aagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaac 181  Q
    |||||||| |||||||| || ||||||||||||||||| ||||||||||    
T  22808851 aagattcaaaatgaaaatctgctaccaaaaggtggtggcagtgatcaac 22808803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 177
Target Start/End: Original strand, 25732088 - 25732132
Alignment:
Q  133 aagattcagaatgaaaacctcctaccaaaaggtggtggtagtgat 177  Q
    ||||||||||| ||||| || ||||||||||||||||||||||||    
T  25732088 aagattcagaacgaaaatctactaccaaaaggtggtggtagtgat 25732132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 181
Target Start/End: Complemental strand, 26868379 - 26868307
Alignment:
Q  109 agcatggagaagaaaatgtttctcaagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaac 181  Q
    |||||||| ||||||||| | || ||||| |||||||||||| || | ||||||||||| || | ||||||||    
T  26868379 agcatggaaaagaaaatgctgctgaagatccagaatgaaaacatctttccaaaaggtggaggaaatgatcaac 26868307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0865 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0865
Description:

Target: scaffold0865; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 133 - 179
Target Start/End: Original strand, 3570 - 3616
Alignment:
Q  133 aagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatca 179  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||||    
T  3570 aagattcagaacgaaaacctactaccaaaaggtggtggtagtgatca 3616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1002 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold1002
Description:

Target: scaffold1002; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 133 - 181
Target Start/End: Original strand, 908 - 956
Alignment:
Q  133 aagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaac 181  Q
    ||||||||||| || ||||| ||||||||||||||||||||||||||||    
T  908 aagattcagaacgacaacctactaccaaaaggtggtggtagtgatcaac 956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0414 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0414
Description:

Target: scaffold0414; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 109 - 181
Target Start/End: Original strand, 3682 - 3754
Alignment:
Q  109 agcatggagaagaaaatgtttctcaagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaac 181  Q
    ||||||||||||||  || | || |||||||||||||| || || ||||||||||||||||| ||||||||||    
T  3682 agcatggagaagaaggtgatgctgaagattcagaatgataatctgctaccaaaaggtggtggcagtgatcaac 3754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0398 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: scaffold0398
Description:

Target: scaffold0398; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 133 - 181
Target Start/End: Original strand, 960 - 1008
Alignment:
Q  133 aagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaac 181  Q
    ||||||||||| || ||||| ||||||||||||||||||||||||||||    
T  960 aagattcagaacgacaacctactaccaaaaggtggtggtagtgatcaac 1008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0398; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 133 - 181
Target Start/End: Original strand, 9215 - 9263
Alignment:
Q  133 aagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaac 181  Q
    ||||||||||| || ||||| ||||||||||||||||||||||||||||    
T  9215 aagattcagaacgacaacctactaccaaaaggtggtggtagtgatcaac 9263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 102 - 266
Target Start/End: Complemental strand, 12751 - 12587
Alignment:
Q  102 tgatttgagcatggagaagaaaatgtttctcaagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaactctctttgcagcacataata 201  Q
    |||| |||||||||| ||||| ||| | || |||||||| ||||| || || ||||||||||||||||| ||||||||||  || ||| ||||||  ||     
T  12751 tgatatgagcatggaaaagaagatgatgctgaagattcaaaatgacaagctgctaccaaaaggtggtggcagtgatcaaccatcattggagcacaagatt 12652  T
Q  202 tttcttcattacttcatcacgaaggaaaaagcaaatgtgcccaagtacatcttcaagcacatgat 266  Q
     |||| |||  |||||||||    |||  |||||||||||| |  |||||||||| |||||||||    
T  12651 cttctccatctcttcatcactggtgaaccagcaaatgtgccaagatacatcttcaggcacatgat 12587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2009 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold2009
Description:

Target: scaffold2009; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 128 - 266
Target Start/End: Original strand, 575 - 713
Alignment:
Q  128 ttctcaagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaactctct-ttgcagcacataatatttcttcattacttcatcacgaagg 226  Q
    |||| ||||| |||||||| || || |||||||||||||||||| | |||||| ||||| ||| | || | | | ||| | || |||||||| || |||     
T  575 ttctgaagatccagaatgataatcttctaccaaaaggtggtggtggagatcaa-tctctattggatcatagagtgtttttacactacttcatgaccaaga 673  T
Q  227 aaaaagcaaatgtgcccaagtacatcttcaagcacatgat 266  Q
    | |||||||||||||| |||||||||||||| ||||||||    
T  674 agaaagcaaatgtgcctaagtacatcttcaatcacatgat 713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0195 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0195
Description:

Target: scaffold0195; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 133 - 196
Target Start/End: Complemental strand, 29637 - 29574
Alignment:
Q  133 aagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaactctctttgcagcaca 196  Q
    ||||||||||| || || || |||||||||||||||||||||||||| | ||||||| ||||||    
T  29637 aagattcagaacgagaatctactaccaaaaggtggtggtagtgatcagccctctttggagcaca 29574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0497 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0497
Description:

Target: scaffold0497; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 179
Target Start/End: Original strand, 6903 - 6949
Alignment:
Q  133 aagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatca 179  Q
    ||||||| ||||||||| || ||||||||||||||||||||||||||    
T  6903 aagattcggaatgaaaatctgctaccaaaaggtggtggtagtgatca 6949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0497; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 181
Target Start/End: Original strand, 3626 - 3674
Alignment:
Q  133 aagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaac 181  Q
    |||||||| ||||| || ||  |||||||||||||||||||||||||||    
T  3626 aagattcaaaatgataatctgttaccaaaaggtggtggtagtgatcaac 3674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0454 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0454
Description:

Target: scaffold0454; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 179
Target Start/End: Complemental strand, 4892 - 4846
Alignment:
Q  133 aagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatca 179  Q
    ||||||||||| |||||||| ||||||||||||||||||| ||||||    
T  4892 aagattcagaacgaaaacctactaccaaaaggtggtggtaatgatca 4846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0272 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 179
Target Start/End: Complemental strand, 17790 - 17744
Alignment:
Q  133 aagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatca 179  Q
    |||||||||||||| || || ||||||||||||||||||||||||||    
T  17790 aagattcagaatgacaatctactaccaaaaggtggtggtagtgatca 17744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0272; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 179
Target Start/End: Complemental strand, 22877 - 22831
Alignment:
Q  133 aagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatca 179  Q
    |||||||||||||| || || ||||||||||||||||||||||||||    
T  22877 aagattcagaatgacaatctactaccaaaaggtggtggtagtgatca 22831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 179
Target Start/End: Complemental strand, 1097 - 1051
Alignment:
Q  133 aagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatca 179  Q
    ||||||||||| ||||| || ||||||||||||||||||||||||||    
T  1097 aagattcagaacgaaaatctgctaccaaaaggtggtggtagtgatca 1051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0162 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0162
Description:

Target: scaffold0162; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 18048 - 18003
Alignment:
Q  136 attcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaac 181  Q
    ||||| ||||| ||||| ||||||||||||||||||||||||||||    
T  18048 attcaaaatgacaacctactaccaaaaggtggtggtagtgatcaac 18003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 39598 - 39643
Alignment:
Q  136 attcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaac 181  Q
    ||||| ||||| ||||| ||||||||||||||||||||||||||||    
T  39598 attcaaaatgacaacctactaccaaaaggtggtggtagtgatcaac 39643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0450 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0450
Description:

Target: scaffold0450; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 181
Target Start/End: Complemental strand, 1556 - 1508
Alignment:
Q  133 aagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaac 181  Q
    |||||||||||||| ||||| || |||||||||||||| ||||||||||    
T  1556 aagattcagaatgataacctgcttccaaaaggtggtggcagtgatcaac 1508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0450; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 287
Target Start/End: Complemental strand, 1458 - 1402
Alignment:
Q  231 agcaaatgtgcccaagtacatcttcaagcacatgatcaaagagctaagggaaagcca 287  Q
    |||||||||||| | ||||||||||| |||||||||  || |||||||||| |||||    
T  1458 agcaaatgtgccaaggtacatcttcaggcacatgattcaacagctaagggagagcca 1402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0411 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0411
Description:

Target: scaffold0411; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 133 - 264
Target Start/End: Original strand, 3659 - 3790
Alignment:
Q  133 aagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaactctctttgcagcacataatatttcttcattacttcatcacgaaggaaaaag 232  Q
    ||||||||||| ||||| || ||||||||||| |||||||||||||| |  ||  || ||||||  ||  | |||||||||||||||||    | | |||    
T  3659 aagattcagaacgaaaatctgctaccaaaaggaggtggtagtgatcagccttcactggagcacaagatcctccttcattacttcatcactggtgtagaag 3758  T
Q  233 caaatgtgcccaagtacatcttcaagcacatg 264  Q
    ||||||||||||  ||||| |||| |||||||    
T  3759 caaatgtgcccagatacattttcaggcacatg 3790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 111 - 266
Target Start/End: Original strand, 131854 - 132009
Alignment:
Q  111 catggagaagaaaatgtttctcaagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatcaactctctttgcagcacataatatttcttcat 210  Q
    ||||||||||| |||| |||| ||||| || |||| ||| || ||||||||||| ||||| | ||||||||  || ||| ||||||  ||||| || |||    
T  131854 catggagaagagaatgcttctgaagatccaaaatgcaaatctgctaccaaaaggaggtggcaatgatcaaccttcattggagcacaagatattcctccat 131953  T
Q  211 tacttcatcacgaaggaaaaagcaaatgtgcccaagtacatcttcaagcacatgat 266  Q
       |||||||| |  ||| | ||||||||||| || ||||| |||||||| |||||    
T  131954 ctgttcatcacaagagaatatgcaaatgtgccaaaatacattttcaagcatatgat 132009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1362 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1362
Description:

Target: scaffold1362; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 179
Target Start/End: Original strand, 730 - 776
Alignment:
Q  133 aagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatca 179  Q
    ||||| ||||| ||||| || ||||||||||||||||||||||||||    
T  730 aagatgcagaacgaaaatctgctaccaaaaggtggtggtagtgatca 776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1078 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1078
Description:

Target: scaffold1078; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 179
Target Start/End: Original strand, 1029 - 1075
Alignment:
Q  133 aagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatca 179  Q
    |||||||||||||||||  | ||||||||||||||||| ||||||||    
T  1029 aagattcagaatgaaaatttgctaccaaaaggtggtggcagtgatca 1075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0670 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0670
Description:

Target: scaffold0670; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 179
Target Start/End: Original strand, 781 - 827
Alignment:
Q  133 aagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatca 179  Q
    |||||||| |||||||| ||  |||||||||||||||||||||||||    
T  781 aagattcaaaatgaaaatctgttaccaaaaggtggtggtagtgatca 827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0322 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0322
Description:

Target: scaffold0322; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 179
Target Start/End: Original strand, 6037 - 6083
Alignment:
Q  133 aagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatca 179  Q
    ||||||||||| || ||||| ||||||||||||||||||| ||||||    
T  6037 aagattcagaacgacaacctactaccaaaaggtggtggtaatgatca 6083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 179
Target Start/End: Complemental strand, 2032 - 1986
Alignment:
Q  133 aagattcagaatgaaaacctcctaccaaaaggtggtggtagtgatca 179  Q
    ||||||||||| || || || ||||||||||||||||||||||||||    
T  2032 aagattcagaacgagaatctactaccaaaaggtggtggtagtgatca 1986  T

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Target: scaffold0422 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0422
Description:

Target: scaffold0422; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 260
Target Start/End: Complemental strand, 15178 - 15073
Alignment:
Q  155 taccaaaaggtggtggtagtgatcaactctctttgcagcacataatatttcttcattacttcatcacgaaggaaaaagcaaatgtgcccaagtacatctt 254  Q
    |||||||||||||| | |||||||||| |||| |  ||||||  ||||| || |||   |||||||| |||||| | ||||| ||||| |||||||| ||    
T  15178 taccaaaaggtggtagcagtgatcaaccctctctagagcacaagatattcctccatctgttcatcacaaaggaatatgcaaacgtgcctaagtacatgtt 15079  T
Q  255 caagca 260  Q
    ||||||    
T  15078 caagca 15073  T

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