View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18285_high_16 (Length: 342)
Name: NF18285_high_16
Description: NF18285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18285_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 8 - 321
Target Start/End: Complemental strand, 935198 - 934881
Alignment:
| Q |
8 |
cagcacagacatgcaaactctttgcagtagcagactaacctagaccgttgtatttcctcaattgtta----aacaaaattagttcaatgtcaacttagat |
103 |
Q |
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| T |
935198 |
cagcacacacatgcaaactctttgcagtagcagactaacctagaccgttgtatttcctcaattgttagataaacaaaattagttcaatgtcaacttagat |
935099 |
T |
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| Q |
104 |
gacagaatagcatttgtgcaatacagcaaaatagaaaccaaaatttgtgcgtcacactttcggaacatttagatttacgtacaaaagctagatgcccaaa |
203 |
Q |
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| T |
935098 |
gacagaatagcatttgtgcaatacagcaaaatagaaaccaaaatttgtgcgtcacactttcggaacatttagatttacgtacaaaagctagatgcccaaa |
934999 |
T |
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| Q |
204 |
actagagcttgataacaactccttcaaaaatgccatcatccctaaagttaggtgcaaagagtcttggatcaacaggtcctggaagactgaatgaaattgt |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
934998 |
actagagcttgataacaactccttcaaaaatgccatcatccctaaagttaggtgcaaagagtcttggatcaacaggtcctggaagactgaatgaaattgt |
934899 |
T |
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| Q |
304 |
gaatggtccaggagagca |
321 |
Q |
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|||||||||||||||||| |
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| T |
934898 |
gaatggtccaggagagca |
934881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 8 - 324
Target Start/End: Complemental strand, 33959582 - 33959260
Alignment:
| Q |
8 |
cagcacagacatgcaaactctttgcagtagcagactaacctagaccgttgtatttcctcaattgtt----aaacaaaattagttcaatgtcaacttagat |
103 |
Q |
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| T |
33959582 |
cagcatagacatgcaaactcttagtagtagcagacaaatctatatcattccatttcctcaatagttggataaacaaaattagttcactgtcaacttagat |
33959483 |
T |
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| Q |
104 |
gacagaatagcatttg-tgcaatacagcaaaatagaaaccaaaa-tttgtgcgtcacactttcggaacatttagatttacgtacaaaagctagatgccca |
201 |
Q |
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|||| || ||||| || ||||||| ||||||| | ||||||||| ||||| | || ||||||| |||||||||||||||| ||||||||||||||||||| |
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| T |
33959482 |
gacataacagcatctggtgcaataaagcaaaaaataaaccaaaaatttgttcatcgcactttcagaacatttagatttacttacaaaagctagatgccca |
33959383 |
T |
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| Q |
202 |
aaactagagcttgataacaactccttcaaaaatgccatcatccctaaagttaggtgcaaagagtcttggatcaacaggtcctggaagactgaatgaaatt |
301 |
Q |
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||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33959382 |
aaactagagcttgattacaactccttcaaaaataccatcagacctaaagttaggtgcaaagagtcttggatcaacaggtcctggaagactgaatgaaatt |
33959283 |
T |
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| Q |
302 |
gtgaatggtccaggagagcataa |
324 |
Q |
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|||||||| |||||||||||||| |
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| T |
33959282 |
gtgaatggcccaggagagcataa |
33959260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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