View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18285_high_17 (Length: 304)

Name: NF18285_high_17
Description: NF18285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18285_high_17
NF18285_high_17
[»] chr5 (21 HSPs)
chr5 (107-238)||(700742-700868)
chr5 (107-179)||(4689838-4689910)
chr5 (104-179)||(34794770-34794845)
chr5 (104-179)||(2351563-2351638)
chr5 (115-179)||(20119654-20119718)
chr5 (117-179)||(7725959-7726021)
chr5 (117-179)||(7770429-7770491)
chr5 (110-160)||(22493562-22493612)
chr5 (110-179)||(4818284-4818353)
chr5 (110-179)||(35701160-35701229)
chr5 (107-179)||(11963224-11963296)
chr5 (107-179)||(24036116-24036188)
chr5 (107-163)||(32313738-32313794)
chr5 (107-179)||(32528598-32528670)
chr5 (107-175)||(41790603-41790671)
chr5 (110-168)||(32093124-32093182)
chr5 (110-168)||(39918401-39918459)
chr5 (114-179)||(548231-548296)
chr5 (110-179)||(7523054-7523123)
chr5 (110-179)||(8136722-8136791)
chr5 (122-179)||(37148729-37148786)
[»] chr8 (25 HSPs)
chr8 (104-179)||(15001350-15001425)
chr8 (110-179)||(17805573-17805642)
chr8 (107-179)||(37618541-37618613)
chr8 (113-176)||(32918777-32918840)
chr8 (104-179)||(45113939-45114014)
chr8 (110-179)||(40388924-40388993)
chr8 (110-179)||(35225546-35225615)
chr8 (107-179)||(31513733-31513805)
chr8 (107-179)||(45446338-45446410)
chr8 (107-175)||(13407085-13407153)
chr8 (107-179)||(32020151-32020223)
chr8 (107-160)||(12753475-12753528)
chr8 (110-179)||(41709660-41709729)
chr8 (107-163)||(27103858-27103914)
chr8 (107-179)||(34063011-34063083)
chr8 (104-163)||(4599562-4599621)
chr8 (117-163)||(16595308-16595354)
chr8 (110-163)||(6386475-6386528)
chr8 (110-179)||(8673208-8673277)
chr8 (110-179)||(32303738-32303807)
chr8 (110-179)||(34101391-34101460)
chr8 (112-160)||(5969019-5969067)
chr8 (115-179)||(25478131-25478195)
chr8 (107-179)||(29563376-29563448)
chr8 (127-179)||(30501029-30501081)
[»] chr1 (30 HSPs)
chr1 (117-179)||(11772851-11772913)
chr1 (117-179)||(25539748-25539810)
chr1 (114-179)||(26765006-26765071)
chr1 (107-179)||(41968059-41968131)
chr1 (107-179)||(1351644-1351716)
chr1 (107-179)||(17887839-17887911)
chr1 (109-179)||(8838831-8838901)
chr1 (110-179)||(38087208-38087277)
chr1 (110-179)||(42510417-42510486)
chr1 (111-179)||(10384260-10384328)
chr1 (107-179)||(41972804-41972876)
chr1 (110-177)||(24339850-24339917)
chr1 (107-173)||(15540099-15540165)
chr1 (117-179)||(16451019-16451081)
chr1 (110-179)||(844937-845006)
chr1 (124-177)||(1601062-1601115)
chr1 (114-179)||(7183810-7183875)
chr1 (107-179)||(16476364-16476436)
chr1 (107-175)||(23799673-23799741)
chr1 (107-179)||(39281787-39281859)
chr1 (107-179)||(44738251-44738323)
chr1 (108-179)||(3415065-3415136)
chr1 (104-179)||(12890130-12890205)
chr1 (124-179)||(25343415-25343470)
chr1 (107-177)||(45491085-45491155)
chr1 (104-177)||(570281-570354)
chr1 (1-30)||(34283920-34283949)
chr1 (115-175)||(28340521-28340581)
chr1 (107-179)||(35387521-35387593)
chr1 (107-179)||(51703372-51703444)
[»] scaffold0025 (1 HSPs)
scaffold0025 (110-179)||(5583-5652)
[»] chr3 (15 HSPs)
chr3 (107-179)||(51925336-51925408)
chr3 (110-179)||(25860553-25860622)
chr3 (110-179)||(28675674-28675743)
chr3 (107-153)||(40094413-40094459)
chr3 (107-160)||(12349300-12349353)
chr3 (110-179)||(22484874-22484943)
chr3 (110-179)||(51259912-51259981)
chr3 (104-135)||(51813321-51813352)
chr3 (114-179)||(4851592-4851657)
chr3 (107-163)||(1344836-1344892)
chr3 (123-179)||(21373824-21373880)
chr3 (107-179)||(26282516-26282588)
chr3 (115-179)||(29584759-29584823)
chr3 (107-179)||(38213238-38213310)
chr3 (107-179)||(39052968-39053040)
[»] chr6 (24 HSPs)
chr6 (116-179)||(23636107-23636170)
chr6 (107-179)||(10959884-10959956)
chr6 (107-179)||(32805361-32805433)
chr6 (110-179)||(28502342-28502411)
chr6 (110-179)||(29814748-29814817)
chr6 (104-179)||(34684156-34684231)
chr6 (110-179)||(17443146-17443215)
chr6 (107-179)||(15277111-15277183)
chr6 (107-179)||(32410026-32410098)
chr6 (107-160)||(3259580-3259633)
chr6 (110-179)||(4494275-4494344)
chr6 (110-179)||(17867718-17867787)
chr6 (110-179)||(17877501-17877570)
chr6 (107-163)||(2614795-2614851)
chr6 (115-159)||(3379615-3379659)
chr6 (122-178)||(11675563-11675619)
chr6 (104-179)||(18597328-18597403)
chr6 (104-163)||(29054258-29054317)
chr6 (110-168)||(14925632-14925690)
chr6 (107-157)||(31870273-31870323)
chr6 (110-179)||(10324288-10324357)
chr6 (110-179)||(11212140-11212209)
chr6 (110-179)||(24242547-24242616)
chr6 (115-179)||(11381976-11382040)
[»] chr4 (23 HSPs)
chr4 (110-179)||(37931807-37931876)
chr4 (107-179)||(37865639-37865711)
chr4 (110-179)||(52319212-52319281)
chr4 (115-179)||(2786851-2786915)
chr4 (129-179)||(29592787-29592837)
chr4 (110-179)||(21579912-21579981)
chr4 (107-179)||(21202626-21202698)
chr4 (114-168)||(7001752-7001806)
chr4 (110-179)||(7555087-7555156)
chr4 (110-179)||(9807043-9807112)
chr4 (110-179)||(20802662-20802731)
chr4 (110-179)||(24002224-24002293)
chr4 (110-179)||(55065463-55065532)
chr4 (107-179)||(22318511-22318583)
chr4 (107-179)||(23521766-23521838)
chr4 (107-179)||(34929801-34929873)
chr4 (112-179)||(33177165-33177232)
chr4 (110-179)||(43640985-43641054)
chr4 (110-179)||(49152230-49152299)
chr4 (115-179)||(12600772-12600836)
chr4 (107-179)||(29785665-29785737)
chr4 (107-179)||(44649289-44649361)
chr4 (104-144)||(47741191-47741231)
[»] chr7 (34 HSPs)
chr7 (104-179)||(22724663-22724738)
chr7 (110-179)||(21784758-21784827)
chr7 (107-175)||(30599144-30599212)
chr7 (107-179)||(32873905-32873977)
chr7 (107-179)||(36769705-36769777)
chr7 (112-179)||(11822119-11822186)
chr7 (124-179)||(34117360-34117415)
chr7 (112-179)||(41211342-41211409)
chr7 (107-179)||(9913413-9913485)
chr7 (107-179)||(9927101-9927173)
chr7 (107-179)||(18470571-18470643)
chr7 (107-179)||(48445409-48445481)
chr7 (104-147)||(2048872-2048915)
chr7 (117-179)||(43189389-43189451)
chr7 (107-177)||(47947649-47947719)
chr7 (107-177)||(47953079-47953149)
chr7 (110-179)||(30849385-30849454)
chr7 (110-179)||(46633584-46633653)
chr7 (115-179)||(329358-329422)
chr7 (115-179)||(3892170-3892234)
chr7 (115-179)||(10932701-10932765)
chr7 (107-179)||(18386412-18386484)
chr7 (107-179)||(23349426-23349498)
chr7 (104-163)||(1870037-1870096)
chr7 (110-157)||(21133280-21133327)
chr7 (104-179)||(22724164-22724239)
chr7 (110-179)||(3922842-3922911)
chr7 (107-179)||(22631620-22631697)
chr7 (110-179)||(26994364-26994433)
chr7 (122-179)||(48894605-48894662)
chr7 (107-163)||(1363541-1363597)
chr7 (115-179)||(11322029-11322093)
chr7 (107-163)||(12982206-12982262)
chr7 (107-179)||(26371945-26372017)
[»] chr2 (24 HSPs)
chr2 (112-179)||(3913599-3913666)
chr2 (107-179)||(2085955-2086027)
chr2 (107-179)||(39461197-39461269)
chr2 (110-179)||(5278972-5279041)
chr2 (110-179)||(40692188-40692257)
chr2 (107-179)||(26418806-26418878)
chr2 (107-163)||(37308555-37308611)
chr2 (104-163)||(26981822-26981881)
chr2 (107-178)||(28824691-28824762)
chr2 (114-179)||(11114756-11114821)
chr2 (104-149)||(12939433-12939478)
chr2 (110-179)||(13829322-13829391)
chr2 (110-163)||(16104173-16104226)
chr2 (110-179)||(16178018-16178087)
chr2 (110-179)||(42706241-42706310)
chr2 (119-158)||(1247060-1247099)
chr2 (110-177)||(16062213-16062280)
chr2 (116-179)||(35114668-35114731)
chr2 (110-179)||(18685719-18685788)
chr2 (110-179)||(32497798-32497867)
chr2 (110-163)||(34338709-34338762)
chr2 (107-179)||(6896053-6896124)
chr2 (107-179)||(17540597-17540669)
chr2 (107-179)||(27462934-27463006)
[»] scaffold0208 (1 HSPs)
scaffold0208 (107-179)||(2479-2551)
[»] scaffold0054 (1 HSPs)
scaffold0054 (115-179)||(23460-23524)
[»] scaffold0957 (1 HSPs)
scaffold0957 (107-163)||(2636-2692)
[»] scaffold0027 (1 HSPs)
scaffold0027 (107-179)||(15055-15127)


Alignment Details
Target: chr5 (Bit Score: 88; Significance: 3e-42; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 107 - 238
Target Start/End: Original strand, 700742 - 700868
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaaacttttagtatgtagaaagtatttgca 206  Q
    ||||||| |||||| ||||||||||| ||||| ||||||||||||||||||||||||||| |     ||||||||||||||||||||||||||||||| |    
T  700742 tcatgtgctgttctaccttgtgttgtattattttgtcttgtactgttatgtccagtatttgc-----tgcaaaacttttagtatgtagaaagtatttgaa 700836  T
Q  207 atacacattactaatgaaatgtatatatatat 238  Q
    ||||||||||||||||||||||||||||||||    
T  700837 atacacattactaatgaaatgtatatatatat 700868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 107 - 179
Target Start/End: Original strand, 4689838 - 4689910
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||| || || | ||||||||||    
T  4689838 tcatgtgttgttctgccttatgttgtgttgttctgtcttgtactgttatgtccattacttgctgttttgcaaa 4689910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 104 - 179
Target Start/End: Complemental strand, 34794845 - 34794770
Alignment:
Q  104 ttatcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||||||||||||||||||||||||  | |||| |||||||||||| |||||| || |||| ||||||||||    
T  34794845 ttatcatgtgttgttctgccttgtgttgtactgttctatcttgtactgttctgtccaatacttactgttttgcaaa 34794770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 104 - 179
Target Start/End: Complemental strand, 2351638 - 2351563
Alignment:
Q  104 ttatcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||| |||||||||||||||||||||||  | |||| |||||||||||| ||||||||| || | ||||||||||    
T  2351638 ttatcctgtgttgttctgccttgtgttgtactgttctatcttgtactgttctgtccagtacttgctgttttgcaaa 2351563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 115 - 179
Target Start/End: Complemental strand, 20119718 - 20119654
Alignment:
Q  115 tgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||||||||||||||| | |||| |||||||||||| |||||| || |||| ||||||||||    
T  20119718 tgttctgccttgtgttgtgctgttctatcttgtactgttctgtccaatacttactgttttgcaaa 20119654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 179
Target Start/End: Original strand, 7725959 - 7726021
Alignment:
Q  117 ttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||| |||||||||||| | | |||||||||||||||||||| |||| |||| ||||||||||    
T  7725959 ttctaccttgtgttgtgatgtactgtcttgtactgttatgtctagtacttactgttttgcaaa 7726021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 179
Target Start/End: Original strand, 7770429 - 7770491
Alignment:
Q  117 ttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||| ||||||||||||| |||||||||||||  |||||||||||| || | ||||||||||    
T  7770429 ttctgtcttgtgttgtgttgttctgtcttgtacgattatgtccagtacttgctgttttgcaaa 7770491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 160
Target Start/End: Original strand, 22493562 - 22493612
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtcca 160  Q
    |||| |||||| ||||||||||||||||||||||||| |||||| ||||||    
T  22493562 tgtgctgttctaccttgtgttgtgttattctgtcttgcactgttctgtcca 22493612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 179
Target Start/End: Original strand, 4818284 - 4818353
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||||||||||||||||||   | |||| |||||||||||| ||||||||| || | ||||||||||    
T  4818284 tgtgttgttctgccttgtgttgcactgttctatcttgtactgttctgtccagtacttgctgttttgcaaa 4818353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 35701229 - 35701160
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||| ||||||||||||||||  | |||| |||||||||||| ||||||||| || | ||||||||||    
T  35701229 tgtgttattctgccttgtgttgtactgttctatcttgtactgttctgtccagtacttgctgttttgcaaa 35701160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 11963296 - 11963224
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||||| |||||| |||||||||  | |||| |||||||||||| ||||||||| || | ||||||||||    
T  11963296 tcatgtgttattctgctttgtgttgtactgttctatcttgtactgttctgtccagtacttgctgttttgcaaa 11963224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 24036188 - 24036116
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||||||||||| ||| ||||||| | |||||||||||||||||  || ||||| |||  ||||||||||    
T  24036188 tcatgtgttgttctgtcttatgttgtgctgttctgtcttgtactgttcagtacagtacttattgttttgcaaa 24036116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 163
Target Start/End: Complemental strand, 32313794 - 32313738
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagta 163  Q
    ||||||||||||||| |||||||| |||| ||||||||| |||| ||||||| ||||    
T  32313794 tcatgtgttgttctgtcttgtgttatgttgttctgtcttatacttttatgtcaagta 32313738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 32528670 - 32528598
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||| ||||||||||| ||||||  | |||| |||||||||||| ||||||||| ||||  |||||||||    
T  32528670 tcatgtgctgttctgccttatgttgtactgttctatcttgtactgttctgtccagtacttactattttgcaaa 32528598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 175
Target Start/End: Original strand, 41790603 - 41790671
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttg 175  Q
    ||||||||||||||||||||||||||  | |||| | || ||||||| ||||||||| |||| ||||||    
T  41790603 tcatgtgttgttctgccttgtgttgtactgttctattttatactgttctgtccagtacttactgttttg 41790671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 168
Target Start/End: Original strand, 32093124 - 32093182
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttac 168  Q
    |||| |||||||||||||||| |||| ||||||||  ||||||| ||||||||| ||||    
T  32093124 tgtgctgttctgccttgtgttatgttgttctgtctcttactgttctgtccagtacttac 32093182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 168
Target Start/End: Complemental strand, 39918459 - 39918401
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttac 168  Q
    ||||||||||| |||||||||||  | |||| |||||||||||| ||||||||| ||||    
T  39918459 tgtgttgttctaccttgtgttgtactgttctatcttgtactgttctgtccagtacttac 39918401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 179
Target Start/End: Complemental strand, 548296 - 548231
Alignment:
Q  114 ttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||||||| ||||||  | |||| |||||||||||| ||||||||| |||  ||||||||||    
T  548296 ttgttctgccttatgttgtactgttctatcttgtactgttctgtccagtacttaatgttttgcaaa 548231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 7523123 - 7523054
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||| ||||||||||||||||||  | |||| |||||||||||| |||||| || || | ||||||||||    
T  7523123 tgtgctgttctgccttgtgttgtactgttctatcttgtactgttctgtccaatacttcctgttttgcaaa 7523054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 8136791 - 8136722
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||||| |||||||||||||  | |||| ||||||||| || ||||||||| |||| ||||| ||||    
T  8136791 tgtgttgttatgccttgtgttgtactgttctatcttgtactattctgtccagtacttactgttttacaaa 8136722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 179
Target Start/End: Original strand, 37148729 - 37148786
Alignment:
Q  122 ccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||||||| | |||||| || ||||||| ||||||||| |||| ||||||||||    
T  37148729 ccttgtgttgtgctgttctgtattatactgttttgtccagtacttactgttttgcaaa 37148786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 8e-21; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 104 - 179
Target Start/End: Complemental strand, 15001425 - 15001350
Alignment:
Q  104 ttatcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||| |||||||||||||||||||||||| | ||||||||||||||||| ||||||||| |||| ||||||||||    
T  15001425 ttatcttgtgttgttctgccttgtgttgtgctgttctgtcttgtactgttctgtccagtacttactgttttgcaaa 15001350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 17805642 - 17805573
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||| |||| |||| ||||||||||    
T  17805642 tgtgttgttctaccttgtgttgtgttattctgtcttgtactgttttgtcaagtacttactgttttgcaaa 17805573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 107 - 179
Target Start/End: Original strand, 37618541 - 37618613
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||| ||||||||||||||||||| | || ||| |||||||||||||||||||| |||||||||||||||    
T  37618541 tcatgtgctgttctgccttgtgttgtgctgttatgttttgtactgttatgtccagtacttaccgttttgcaaa 37618613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 113 - 176
Target Start/End: Complemental strand, 32918840 - 32918777
Alignment:
Q  113 gttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgc 176  Q
    ||||||||||| ||||||||||| || ||||||||||||||||||| |||||||||||||||||    
T  32918840 gttgttctgccctgtgttgtgttgttatgtcttgtactgttatgtcaagtatttaccgttttgc 32918777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 104 - 179
Target Start/End: Complemental strand, 45114014 - 45113939
Alignment:
Q  104 ttatcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||||||||||| |||||||||||||| |  ||| |||||||||||||||||||||| |||| ||||||||||    
T  45114014 ttatcatgtgttgttatgccttgtgttgtgctgctctatcttgtactgttatgtccagtacttactgttttgcaaa 45113939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 40388993 - 40388924
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||||||||||||||||||| | || ||||||||||| |||||||||||| ||||| |||||||||    
T  40388993 tgtgttgttctgccttgtgttgtgctgttatgtcttgtactcttatgtccagtacttaccattttgcaaa 40388924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 35225615 - 35225546
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||||||| ||||||||||||| | |||||||||||| || ||||||||| |||| ||||||||||    
T  35225615 tgtgttgttctgtcttgtgttgtgttgtcctgtcttgtactattctgtccagtacttactgttttgcaaa 35225546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 107 - 179
Target Start/End: Original strand, 31513733 - 31513805
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||||||||||||||||||||||  | |||| |||||||||||| |||||| || |||| ||||||||||    
T  31513733 tcatgtgttgttctgccttgtgttgtactgttctatcttgtactgttttgtccaatacttactgttttgcaaa 31513805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 45446410 - 45446338
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||| ||||||||||||||||||  | |||| |||||||||||| ||||||||| |||| ||||||||||    
T  45446410 tcatgtgctgttctgccttgtgttgtactgttctatcttgtactgttctgtccagtacttactgttttgcaaa 45446338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 107 - 175
Target Start/End: Original strand, 13407085 - 13407153
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttg 175  Q
    ||||||||||||||||||||||||||  | |||| | |||||||||| ||||||||| |||| ||||||    
T  13407085 tcatgtgttgttctgccttgtgttgtactgttctatattgtactgttctgtccagtacttactgttttg 13407153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 107 - 179
Target Start/End: Original strand, 32020151 - 32020223
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||| ||||||||||||||||||  | |||| |||||||||||| ||||||||| || | ||||||||||    
T  32020151 tcatgtgctgttctgccttgtgttgtactgttctatcttgtactgttctgtccagtacttgctgttttgcaaa 32020223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 160
Target Start/End: Original strand, 12753475 - 12753528
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtcca 160  Q
    ||||||||||||||| |||||||||| || |||| |||||||||||| ||||||    
T  12753475 tcatgtgttgttctgtcttgtgttgtattgttctatcttgtactgttctgtcca 12753528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 41709729 - 41709660
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||| ||||||||||||||||||  | |||| ||||||| |||| ||||||||| |||| ||||||||||    
T  41709729 tgtgctgttctgccttgtgttgtactgttctatcttgtattgttctgtccagtacttactgttttgcaaa 41709660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 163
Target Start/End: Complemental strand, 27103914 - 27103858
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagta 163  Q
    ||||||| ||||||||||||||||||  | |||| |||||||||||| |||||||||    
T  27103914 tcatgtgctgttctgccttgtgttgtaatgttctatcttgtactgttctgtccagta 27103858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 34063083 - 34063011
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||||||| ||||||| ||||||  | |||| |||||||||||| ||||||||| || | ||||||||||    
T  34063083 tcatgtgttgtgctgccttatgttgtactgttctatcttgtactgttctgtccagtacttgcggttttgcaaa 34063011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 163
Target Start/End: Complemental strand, 4599621 - 4599562
Alignment:
Q  104 ttatcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagta 163  Q
    ||||||| |||||||||| ||||||||||||| ||||||||| || |||| ||| |||||    
T  4599621 ttatcatatgttgttctgtcttgtgttgtgttgttctgtcttatattgttttgttcagta 4599562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 163
Target Start/End: Original strand, 16595308 - 16595354
Alignment:
Q  117 ttctgccttgtgttgtgttattctgtcttgtactgttatgtccagta 163  Q
    |||||||||||||| |||| ||||||||| ||||||| |||||||||    
T  16595308 ttctgccttgtgttttgttgttctgtcttatactgttctgtccagta 16595354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 163
Target Start/End: Complemental strand, 6386528 - 6386475
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagta 163  Q
    |||| ||||||||||||||||||  | |||| |||||||||||| |||||||||    
T  6386528 tgtgctgttctgccttgtgttgtactgttctatcttgtactgttctgtccagta 6386475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 179
Target Start/End: Original strand, 8673208 - 8673277
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||| |||| |||||||||||||  | |||| |||||||||||| ||||||||| || | ||||||||||    
T  8673208 tgtgctgttttgccttgtgttgtactgttctatcttgtactgttttgtccagtacttgctgttttgcaaa 8673277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 179
Target Start/End: Original strand, 32303738 - 32303807
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||| ||||||||||| ||||||  | |||| |||||||||||| ||||||||| || | ||||||||||    
T  32303738 tgtgctgttctgccttttgttgtactgttctatcttgtactgttctgtccagtacttgctgttttgcaaa 32303807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 34101460 - 34101391
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||| ||||||||||||||||||  | |||| |||| ||||||| ||||||||| ||||  |||||||||    
T  34101460 tgtgatgttctgccttgtgttgtactgttctatcttatactgttttgtccagtacttacttttttgcaaa 34101391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 160
Target Start/End: Original strand, 5969019 - 5969067
Alignment:
Q  112 tgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtcca 160  Q
    |||||||||||||||||||||  | |||| |||||||||||| ||||||    
T  5969019 tgttgttctgccttgtgttgtactgttctatcttgtactgttctgtcca 5969067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 179
Target Start/End: Complemental strand, 25478195 - 25478131
Alignment:
Q  115 tgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||||||||||||| || |||| |||| ||||||| |||| |||| |||| ||||| ||||    
T  25478195 tgttctgccttgtgttgtattgttctatcttatactgttttgtcaagtacttactgttttacaaa 25478131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 179
Target Start/End: Original strand, 29563376 - 29563448
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||||||||| |||||||||||  | |||| |||||||||||| ||| || || || | ||||||||||    
T  29563376 tcatgtgttgttctaccttgtgttgtactgttctatcttgtactgttctgttcaatacttgctgttttgcaaa 29563448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 179
Target Start/End: Complemental strand, 30501081 - 30501029
Alignment:
Q  127 tgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||||| |||||||||||||| ||||||| |||||||   ||||||||||    
T  30501081 tgttgtgttgttctgtcttgtactattatgtcaagtatttgttgttttgcaaa 30501029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 117 - 179
Target Start/End: Original strand, 11772851 - 11772913
Alignment:
Q  117 ttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||    
T  11772851 ttctgccttgtgttgtgttgttatgtcttgtactgttatgtccagtacttaccgttttgcaaa 11772913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 117 - 179
Target Start/End: Complemental strand, 25539810 - 25539748
Alignment:
Q  117 ttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||||||||||| || || |||||||||||||||||||||||| |||||||||||||||    
T  25539810 ttctgccttgtgttgtattgttatgtcttgtactgttatgtccagtacttaccgttttgcaaa 25539748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 114 - 179
Target Start/End: Original strand, 26765006 - 26765071
Alignment:
Q  114 ttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||||||||||||||||| |||| |||||||||||| ||||||||| |||| ||||||||||    
T  26765006 ttgttctgccttgtgttgtgttgttctatcttgtactgttctgtccagtacttactgttttgcaaa 26765071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 107 - 179
Target Start/End: Original strand, 41968059 - 41968131
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||| |||||| ||||||||||||||| ||||||||||||||||| ||||||| | |||| ||||||||||    
T  41968059 tcatgtattgttccgccttgtgttgtgttgttctgtcttgtactgttctgtccagcacttactgttttgcaaa 41968131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 107 - 179
Target Start/End: Original strand, 1351644 - 1351716
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||||||||||||||||||||||  | |||| |||||||||||| |||| |||| |||| ||||||||||    
T  1351644 tcatgtgttgttctgccttgtgttgtactgttctatcttgtactgttctgtcaagtacttactgttttgcaaa 1351716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 17887911 - 17887839
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||||||||||||||||||||| || |||| ||||||||| || ||||| ||| |||| ||||||||||    
T  17887911 tcatgtgttgttctgccttgtgttgtattgttctatcttgtactattctgtcccgtacttactgttttgcaaa 17887839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 109 - 179
Target Start/End: Complemental strand, 8838901 - 8838831
Alignment:
Q  109 atgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||| ||||  ||||||||||||| ||||||||| ||| |||||||| ||||||||| ||||||||||    
T  8838901 atgtgtttttctatcttgtgttgtgttgttctgtcttatacagttatgtctagtatttactgttttgcaaa 8838831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 179
Target Start/End: Original strand, 38087208 - 38087277
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||| ||||||||||| ||||||  | ||||||||||||||||||||||||||| |||  ||||||||||    
T  38087208 tgtgctgttctgccttatgttgtactgttctgtcttgtactgttatgtccagtacttaatgttttgcaaa 38087277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 42510486 - 42510417
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||| ||||||||||||||||||  | |||| |||||||||||| ||||||||| |||| ||||||||||    
T  42510486 tgtgctgttctgccttgtgttgtactgttctatcttgtactgttctgtccagtacttactgttttgcaaa 42510417  T

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Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 111 - 179
Target Start/End: Complemental strand, 10384328 - 10384260
Alignment:
Q  111 gtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||| |||| ||||||||| | ||| |||||||||||||||| |||||| |||| ||||||||||    
T  10384328 gtgttgttttgccctgtgttgtgctgttcggtcttgtactgttatgcccagtacttactgttttgcaaa 10384260  T

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Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 41972876 - 41972804
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||| ||||||||||||||||||  | |||| |||||||||||| ||||||||| || | ||||||||||    
T  41972876 tcatgtgctgttctgccttgtgttgtactgttctatcttgtactgttctgtccagtacttgctgttttgcaaa 41972804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 110 - 177
Target Start/End: Original strand, 24339850 - 24339917
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgca 177  Q
    |||| ||||||||||||||||||  | |||| |||||||||||| |||||||||||| | ||||||||    
T  24339850 tgtgctgttctgccttgtgttgtactgttctatcttgtactgttctgtccagtatttgctgttttgca 24339917  T

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Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 173
Target Start/End: Original strand, 15540099 - 15540165
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttt 173  Q
    |||||||||||| |||||||||||||| | |||||  |||||||||| ||||||||| |||| ||||    
T  15540099 tcatgtgttgttatgccttgtgttgtgctgttctgcattgtactgttctgtccagtacttactgttt 15540165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 179
Target Start/End: Complemental strand, 16451081 - 16451019
Alignment:
Q  117 ttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||| ||||||||  |||||| |||||||||||| ||||||||| |||| ||||||||||    
T  16451081 ttctgccatgtgttgtactattctatcttgtactgttctgtccagtacttactgttttgcaaa 16451019  T

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Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 179
Target Start/End: Original strand, 844937 - 845006
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||| ||||||||||||||||||  | |||| |||||||||||| ||||||||| || | ||||||||||    
T  844937 tgtgctgttctgccttgtgttgtactgttctatcttgtactgttctgtccagtacttgctgttttgcaaa 845006  T

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Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 177
Target Start/End: Complemental strand, 1601115 - 1601062
Alignment:
Q  124 ttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgca 177  Q
    |||||||||||| |||| |||||||||||| ||||||||| |||| ||||||||    
T  1601115 ttgtgttgtgttgttctttcttgtactgttttgtccagtacttactgttttgca 1601062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 114 - 179
Target Start/End: Complemental strand, 7183875 - 7183810
Alignment:
Q  114 ttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||| ||||||||||  | |||| |||||||||||| ||||||||| |||| ||||||||||    
T  7183875 ttgttctgtcttgtgttgtactgttctatcttgtactgttctgtccagtacttactgttttgcaaa 7183810  T

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Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 179
Target Start/End: Original strand, 16476364 - 16476436
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||| |||| |||||| ||| ||||| |||| |||| || |||||||||||||| |||| ||||||||||    
T  16476364 tcatgtggtgttatgccttatgtcgtgttgttctatcttatattgttatgtccagtacttactgttttgcaaa 16476436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 175
Target Start/End: Original strand, 23799673 - 23799741
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttg 175  Q
    |||||||||||||| |||||| ||||||| |||| |||||||||||| | | ||||| |||| ||||||    
T  23799673 tcatgtgttgttctcccttgtattgtgttgttctttcttgtactgttctatacagtacttactgttttg 23799741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 39281859 - 39281787
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||||||| ||| |||||||||| | |||| |||| |||| || ||||||||| |||| ||||||||||    
T  39281859 tcatgtgttgttatgcattgtgttgtgctgttctatcttatactattctgtccagtacttactgttttgcaaa 39281787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 179
Target Start/End: Original strand, 44738251 - 44738323
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||||||||| ||||||||||| || |||| |||| ||||||| |||| |||| || | ||||||||||    
T  44738251 tcatgtgttgttctaccttgtgttgtattgttctatcttctactgttctgtctagtacttgctgttttgcaaa 44738323  T

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Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 108 - 179
Target Start/End: Original strand, 3415065 - 3415136
Alignment:
Q  108 catgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||||||| || |||||||| | || |||| |||||||||||| ||||||||| |||| ||||| ||||    
T  3415065 catgtgttgttttgtcttgtgttatattgttctatcttgtactgttttgtccagtacttactgttttacaaa 3415136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 179
Target Start/End: Complemental strand, 12890205 - 12890130
Alignment:
Q  104 ttatcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||| |||| ||||||||||||||||||  | |||| |||||||||||| |||| |||| ||||  |||||||||    
T  12890205 ttatcctgtgctgttctgccttgtgttgtactgttctatcttgtactgttctgtctagtacttactattttgcaaa 12890130  T

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Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 124 - 179
Target Start/End: Original strand, 25343415 - 25343470
Alignment:
Q  124 ttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||| ||||||| ||||||||||||| |||||||| |||| |||| ||||||||||    
T  25343415 ttgtcttgtgttgttctgtcttgtacggttatgtctagtagttactgttttgcaaa 25343470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 177
Target Start/End: Original strand, 45491085 - 45491155
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgca 177  Q
    ||||||| |||||||||||||||||| || |||| |||| || |||| ||||||||| || | ||||||||    
T  45491085 tcatgtgctgttctgccttgtgttgtattgttctatcttatattgttctgtccagtaattgctgttttgca 45491155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 177
Target Start/End: Complemental strand, 570354 - 570281
Alignment:
Q  104 ttatcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgca 177  Q
    ||||| ||||||||||||| || ||||||||| |||| ||||||||| || |||| | || |||| ||||||||    
T  570354 ttatcttgtgttgttctgctttatgttgtgttgttctatcttgtactattttgtctaatacttactgttttgca 570281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 34283920 - 34283949
Alignment:
Q  1 acacaactttttatctcacgtacaagttat 30  Q
    ||||||||||||||||||||||||||||||    
T  34283920 acacaactttttatctcacgtacaagttat 34283949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 175
Target Start/End: Original strand, 28340521 - 28340581
Alignment:
Q  115 tgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttg 175  Q
    ||||||||||||||||||  | |||| |||||||||||| |||||| || |||| ||||||    
T  28340521 tgttctgccttgtgttgtactgttctatcttgtactgttctgtccaatacttactgttttg 28340581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 179
Target Start/End: Original strand, 35387521 - 35387593
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||| |||||| |||||||||||  | |||| ||||||| | |||||||||||| || | ||||||||||    
T  35387521 tcatgtgctgttctaccttgtgttgtactgttctatcttgtattattatgtccagtacttgctgttttgcaaa 35387593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 179
Target Start/End: Original strand, 51703372 - 51703444
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||| ||||| |||||||||||||  | || | |||||||||||| ||||||||| || | ||||||||||    
T  51703372 tcatgtattgttttgccttgtgttgttctgttatatcttgtactgttttgtccagtacttgctgttttgcaaa 51703444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 110 - 179
Target Start/End: Original strand, 5583 - 5652
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||||||||| || | ||||||||||    
T  5583 tgtgctgttctgccttgtgttgtgttgttctgtcttgtactgttatgtccagtacttgctgttttgcaaa 5652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 107 - 179
Target Start/End: Original strand, 51925336 - 51925408
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||| ||||||||||||||||||| | || |||||||||||||||| ||||||| |||||||||||||||    
T  51925336 tcatgtgctgttctgccttgtgttgtgctgttatgtcttgtactgttatatccagtacttaccgttttgcaaa 51925408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 179
Target Start/End: Original strand, 25860553 - 25860622
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||||| |||||| ||||||| | |||| |||||||||||| ||||||||  |||||||||||||||    
T  25860553 tgtgttgttatgccttttgttgtgctgttctatcttgtactgttctgtccagtgcttaccgttttgcaaa 25860622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 28675743 - 28675674
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||||||||||||||||||  | |||| |||||||||||| ||||||||| |||  ||||||||||    
T  28675743 tgtgttgttctgccttgtgttgtactgttctatcttgtactgttctgtccagtacttattgttttgcaaa 28675674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 153
Target Start/End: Complemental strand, 40094459 - 40094413
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgtt 153  Q
    |||||||||||||||||||||||||| || |||| ||||||||||||    
T  40094459 tcatgtgttgttctgccttgtgttgtattgttctatcttgtactgtt 40094413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 160
Target Start/End: Original strand, 12349300 - 12349353
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtcca 160  Q
    ||||||| ||||||||||||||||||  | |||| |||||||||||||||||||    
T  12349300 tcatgtgctgttctgccttgtgttgtactgttctatcttgtactgttatgtcca 12349353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 179
Target Start/End: Original strand, 22484874 - 22484943
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||| |||||| |||| ||||||||| | || |||| ||||||||||||||||| |||| ||||||||||    
T  22484874 tgtgctgttctaccttatgttgtgttgtcctatcttatactgttatgtccagtacttactgttttgcaaa 22484943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 179
Target Start/End: Original strand, 51259912 - 51259981
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||| ||||||||||||||||||  | |||| |||||||||||| | ||||||| |||| ||||||||||    
T  51259912 tgtgctgttctgccttgtgttgtactgttctatcttgtactgttctatccagtacttactgttttgcaaa 51259981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 135
Target Start/End: Complemental strand, 51813352 - 51813321
Alignment:
Q  104 ttatcatgtgttgttctgccttgtgttgtgtt 135  Q
    ||||||||||||||||||||||||||||||||    
T  51813352 ttatcatgtgttgttctgccttgtgttgtgtt 51813321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 179
Target Start/End: Original strand, 4851592 - 4851657
Alignment:
Q  114 ttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||||||||||||||  | |||| |||||||||||| ||||| ||| || | ||||||||||    
T  4851592 ttgttctgccttgtgttgtactgttctatcttgtactgttttgtccggtacttgctgttttgcaaa 4851657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 163
Target Start/End: Original strand, 1344836 - 1344892
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagta 163  Q
    ||||||| ||||||| ||||||||||  | |||| |||||||||||| |||||||||    
T  1344836 tcatgtgatgttctgtcttgtgttgtactgttctatcttgtactgttttgtccagta 1344892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 179
Target Start/End: Complemental strand, 21373880 - 21373824
Alignment:
Q  123 cttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||||||| | |||||||||||| |||| |||||| || |||| ||||||||||    
T  21373880 cttgtgttgtgctgttctgtcttgtattgttctgtccaatacttactgttttgcaaa 21373824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 179
Target Start/End: Original strand, 26282516 - 26282588
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||| ||||||| ||||||||||  | |||| |||||||||||| | ||||||| || | ||||||||||    
T  26282516 tcatgtgctgttctgtcttgtgttgtactgttctatcttgtactgttctatccagtacttgctgttttgcaaa 26282588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 179
Target Start/End: Complemental strand, 29584823 - 29584759
Alignment:
Q  115 tgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||||||| ||||||  | |||| |||||||||||| ||||||||| || | ||||||||||    
T  29584823 tgttctgccttatgttgtactgttctatcttgtactgttctgtccagtacttgctgttttgcaaa 29584759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 38213310 - 38213238
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||| ||||||||||  |||| |||| || |||||||||||||| ||| || || |||| ||||||||||    
T  38213310 tcatgtgctgttctgcctaatgttatgttgttttgtcttgtactgttctgtacaatacttactgttttgcaaa 38213238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 179
Target Start/End: Original strand, 39052968 - 39053040
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||||||||||  ||||||||||  | |||| |||||||||||| ||| ||| ||||||  |||||||||    
T  39052968 tcatgtgttgttctatcttgtgttgtactgttctatcttgtactgttctgttcagcatttactattttgcaaa 39053040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 116 - 179
Target Start/End: Complemental strand, 23636170 - 23636107
Alignment:
Q  116 gttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||||| ||||||||| ||||||||||||||||||| |||||||||||| ||||||||||    
T  23636170 gttctgccttctgttgtgttgttctgtcttgtactgttatatccagtatttactgttttgcaaa 23636107  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 10959956 - 10959884
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||||||||||||||||| |||| | ||||||||||||||||| | ||||||| |||| ||||||||||    
T  10959956 tcatgtgttgttctgccttgtgctgtgatgttctgtcttgtactgttctatccagtacttactgttttgcaaa 10959884  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 32805433 - 32805361
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||| |||||||||||||||||| || |||| |||||||||||||||||||||| || | ||||||||||    
T  32805433 tcatgtgctgttctgccttgtgttgtattgttctatcttgtactgttatgtccagtacttgctgttttgcaaa 32805361  T

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Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 28502411 - 28502342
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||||||||||||||||||  | |||| |||||||||||| ||||||||| |||| ||||||||||    
T  28502411 tgtgttgttctgccttgtgttgtactgttctatcttgtactgttctgtccagtacttactgttttgcaaa 28502342  T

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Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 29814817 - 29814748
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||||||||||||||||||  | |||| |||||||||||| ||||||||| |||| ||||||||||    
T  29814817 tgtgttgttctgccttgtgttgtactgttctatcttgtactgttctgtccagtacttactgttttgcaaa 29814748  T

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Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 104 - 179
Target Start/End: Original strand, 34684156 - 34684231
Alignment:
Q  104 ttatcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||| ||||||||| |||||| ||||||||| | ||||||||||||||| |||||| || |||| ||||||||||    
T  34684156 ttatcctgtgttgttatgccttatgttgtgttgtcctgtcttgtactgttttgtccaatacttactgttttgcaaa 34684231  T

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Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 17443215 - 17443146
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||| |||| |||||||||||||||| |||| |||||||||||| |||||| ||||| | ||||||||||    
T  17443215 tgtgctgttatgccttgtgttgtgttgttctatcttgtactgttctgtccaatatttgctgttttgcaaa 17443146  T

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Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 107 - 179
Target Start/End: Original strand, 15277111 - 15277183
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||||||||||||||| ||||||  | |||| |||||||||||| ||||||||| || | ||||||||||    
T  15277111 tcatgtgttgttctgccttatgttgtactgttctatcttgtactgttctgtccagtacttgctgttttgcaaa 15277183  T

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Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 107 - 179
Target Start/End: Original strand, 32410026 - 32410098
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||| ||||||||||||||||||  | |||| |||| ||||||| |||| ||||||||| ||||||||||    
T  32410026 tcatgtgctgttctgccttgtgttgtactgttctatcttatactgttctgtctagtatttactgttttgcaaa 32410098  T

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Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 160
Target Start/End: Complemental strand, 3259633 - 3259580
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtcca 160  Q
    ||||||||||||||||||||||||||  | |||| |||||||||||| ||||||    
T  3259633 tcatgtgttgttctgccttgtgttgtactgttctatcttgtactgttctgtcca 3259580  T

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Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 179
Target Start/End: Original strand, 4494275 - 4494344
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||||||||||| ||||||| | |||| || ||||||||| |||| |||| |||| ||||||||||    
T  4494275 tgtgttgttctgccttatgttgtgctgttctatcctgtactgttctgtctagtacttactgttttgcaaa 4494344  T

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Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 17867787 - 17867718
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||||||||||||||||||  | |||| | |||||||||| ||||||||| || | ||||||||||    
T  17867787 tgtgttgttctgccttgtgttgtactgttctatgttgtactgttctgtccagtacttgctgttttgcaaa 17867718  T

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Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 17877570 - 17877501
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||||||||||||||||||  | |||| | |||||||||| ||||||||| || | ||||||||||    
T  17877570 tgtgttgttctgccttgtgttgtactgttctatgttgtactgttctgtccagtacttgctgttttgcaaa 17877501  T

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Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 163
Target Start/End: Complemental strand, 2614851 - 2614795
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagta 163  Q
    ||||||||||||||||||||||||||  | |||| |||| ||||||| |||||||||    
T  2614851 tcatgtgttgttctgccttgtgttgtactgttctatcttatactgttttgtccagta 2614795  T

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Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 159
Target Start/End: Complemental strand, 3379659 - 3379615
Alignment:
Q  115 tgttctgccttgtgttgtgttattctgtcttgtactgttatgtcc 159  Q
    |||||||| ||||||||||||||||||||||||| |||| |||||    
T  3379659 tgttctgcattgtgttgtgttattctgtcttgtattgttctgtcc 3379615  T

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Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 178
Target Start/End: Original strand, 11675563 - 11675619
Alignment:
Q  122 ccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaa 178  Q
    |||| ||||||||| |||||||||||| ||||||||||| || |||| |||||||||    
T  11675563 ccttttgttgtgttgttctgtcttgtattgttatgtccaatacttactgttttgcaa 11675619  T

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Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 179
Target Start/End: Original strand, 18597328 - 18597403
Alignment:
Q  104 ttatcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||| |||||||||||| ||| |||||||||| |||||  |||||||||| |||||| || |||| ||||| ||||    
T  18597328 ttattatgtgttgttctacctagtgttgtgttgttctgctttgtactgttctgtccaatacttactgttttacaaa 18597403  T

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Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 163
Target Start/End: Complemental strand, 29054317 - 29054258
Alignment:
Q  104 ttatcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagta 163  Q
    ||||| |||| ||||||| ||| ||||||||| | || ||||||||||||||||||||||    
T  29054317 ttatcttgtgctgttctgtcttatgttgtgttgtcctatcttgtactgttatgtccagta 29054258  T

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Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 168
Target Start/End: Original strand, 14925632 - 14925690
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttac 168  Q
    |||| |||| |||||||||||||||| |||| |||| ||||||||||||| ||| ||||    
T  14925632 tgtgctgttatgccttgtgttgtgttgttctatcttttactgttatgtcccgtacttac 14925690  T

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Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 157
Target Start/End: Original strand, 31870273 - 31870323
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgt 157  Q
    |||||||||||||| |||| | ||||||| |||| ||||||||||||||||    
T  31870273 tcatgtgttgttctcccttatattgtgttgttctttcttgtactgttatgt 31870323  T

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Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 179
Target Start/End: Original strand, 10324288 - 10324357
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||| |||||| |||||||||||  | |||| |||||||||||| ||||| ||| |||| ||||||||||    
T  10324288 tgtgctgttctaccttgtgttgtaatgttctatcttgtactgttctgtccggtacttactgttttgcaaa 10324357  T

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Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 11212209 - 11212140
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||| ||||||||||||||||||  | |||| |||||||||||| |||||| || || | ||||||||||    
T  11212209 tgtgctgttctgccttgtgttgtactgttctatcttgtactgttctgtccaatacttgctgttttgcaaa 11212140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 24242616 - 24242547
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||| ||||||||||||||||||  | || | |||||||||||| ||||||||| || | ||||||||||    
T  24242616 tgtgctgttctgccttgtgttgtactcttttatcttgtactgttctgtccagtacttgctgttttgcaaa 24242547  T

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Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 179
Target Start/End: Complemental strand, 11382040 - 11381976
Alignment:
Q  115 tgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||||||||||||||  | |||| |||||||||||| ||| ||||| ||||  |||||||||    
T  11382040 tgttctgccttgtgttgtactgttctatcttgtactgttctgttcagtacttactattttgcaaa 11381976  T

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Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 37931876 - 37931807
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||| ||||||||||||| || ||||||| |||||||||||||||||||||||| |||| ||||||||||    
T  37931876 tgtgctgttctgccttgtattatgttattatgtcttgtactgttatgtccagtacttactgttttgcaaa 37931807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 37865711 - 37865639
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||||||||||||||||||||||  | |||| |||||||||||||||||| ||| |||| ||||||||||    
T  37865711 tcatgtgttgttctgccttgtgttgtactgttctatcttgtactgttatgtcccgtacttactgttttgcaaa 37865639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 52319281 - 52319212
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||||||||||||||||||  | |||| |||||||||||||||||||||| || | ||||||||||    
T  52319281 tgtgttgttctgccttgtgttgtactgttctatcttgtactgttatgtccagtacttgctgttttgcaaa 52319212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 115 - 179
Target Start/End: Complemental strand, 2786915 - 2786851
Alignment:
Q  115 tgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||| |||||| ||||||||| ||| ||||||||||||||||||||||| |||| ||||||||||    
T  2786915 tgttttgccttatgttgtgttgttcggtcttgtactgttatgtccagtacttactgttttgcaaa 2786851  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 129 - 179
Target Start/End: Complemental strand, 29592837 - 29592787
Alignment:
Q  129 ttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||| ||||||||||||||| |||||||||||||||| ||||||||||    
T  29592837 ttgtgttgttctgtcttgtactgatatgtccagtatttactgttttgcaaa 29592787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 21579981 - 21579912
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||||||||||||||||||  | |||| |||| ||||||| ||||||||| |||| ||||||||||    
T  21579981 tgtgttgttctgccttgtgttgtactgttctatcttatactgttctgtccagtacttactgttttgcaaa 21579912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 21202698 - 21202626
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||| |||||||  |||||||||| | ||||||||||||||||| ||||||||| ||||  |||||||||    
T  21202698 tcatgtgctgttctgttttgtgttgtgctgttctgtcttgtactgttttgtccagtacttactattttgcaaa 21202626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 168
Target Start/End: Complemental strand, 7001806 - 7001752
Alignment:
Q  114 ttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttac 168  Q
    |||||||| ||||||||||| | |||||||||||||| || ||||||||||||||    
T  7001806 ttgttctgtcttgtgttgtgatgttctgtcttgtactattttgtccagtatttac 7001752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 179
Target Start/End: Original strand, 7555087 - 7555156
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||| ||||||| ||||||||||||| || ||||||||||||||| ||||| || ||||  |||||||||    
T  7555087 tgtgatgttctgtcttgtgttgtgttgttttgtcttgtactgttaagtccaatacttactattttgcaaa 7555156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 9807112 - 9807043
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||| |||| |||||||||||||| | |||| |||||||||||| ||||||||| ||||  |||||||||    
T  9807112 tgtgctgttatgccttgtgttgtgctgttctatcttgtactgttctgtccagtacttactattttgcaaa 9807043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 179
Target Start/End: Original strand, 20802662 - 20802731
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||||||||||||||||||  | |||| |||||||||||| ||| ||||| || | ||||||||||    
T  20802662 tgtgttgttctgccttgtgttgtactgttctatcttgtactgttctgttcagtacttgctgttttgcaaa 20802731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 24002293 - 24002224
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||| ||||||||||||||||||  | |||| |||||||||||| ||||||||| || | ||||||||||    
T  24002293 tgtgctgttctgccttgtgttgtactgttctatcttgtactgttctgtccagtacttgctgttttgcaaa 24002224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 179
Target Start/End: Original strand, 55065463 - 55065532
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||| ||||||||||||||||||  |||| | |||| ||||||||||||||||| || | ||||||||||    
T  55065463 tgtgctgttctgccttgtgttgtactattttatcttatactgttatgtccagtacttgctgttttgcaaa 55065532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 179
Target Start/End: Original strand, 22318511 - 22318583
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||||||| || ||||||||||| | |||||  ||||||| || ||||||||| |||| ||||||||||    
T  22318511 tcatgtgttgttatgtcttgtgttgtgctgttctgcattgtactcttctgtccagtacttactgttttgcaaa 22318583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 23521838 - 23521766
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||| ||||||||||||||||||  | || | |||||||||||| ||||||||| || | ||||||||||    
T  23521838 tcatgtgctgttctgccttgtgttgtactgttttatcttgtactgttctgtccagtacttgctgttttgcaaa 23521766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 34929873 - 34929801
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||| ||||||||||||||||||  |||| | | |||||||||| |||| ||| ||||| ||||||||||    
T  34929873 tcatgtgctgttctgccttgtgttgtactattttattttgtactgttttgtctagtttttactgttttgcaaa 34929801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 112 - 179
Target Start/End: Original strand, 33177165 - 33177232
Alignment:
Q  112 tgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||||| ||||||||||  | |||| |||| ||||||| |||| |||| |||||||||||||||    
T  33177165 tgttgttctgtcttgtgttgtactgttctatcttatactgttctgtcaagtacttaccgttttgcaaa 33177232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 43641054 - 43640985
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||| ||||||||||||||||||  | |||| |||||||||||| |||| |||| || | ||||||||||    
T  43641054 tgtgctgttctgccttgtgttgtactgttctatcttgtactgttctgtctagtacttgctgttttgcaaa 43640985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 179
Target Start/End: Original strand, 49152230 - 49152299
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||| ||||||||||||||||||  | |||| |||| ||||||| ||||||||| || | ||||||||||    
T  49152230 tgtgctgttctgccttgtgttgtactgttctatcttatactgttctgtccagtacttgctgttttgcaaa 49152299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 179
Target Start/End: Complemental strand, 12600836 - 12600772
Alignment:
Q  115 tgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||| ||||||||||  | |||| |||||||||||| ||||||||| || | ||||||||||    
T  12600836 tgttctgacttgtgttgtactgttctatcttgtactgttctgtccagtacttgctgttttgcaaa 12600772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 179
Target Start/End: Original strand, 29785665 - 29785737
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||| ||||||||||||||||||  | |||| |||| ||||||| ||| ||||| |||  ||||||||||    
T  29785665 tcatgtgctgttctgccttgtgttgtactgttctatcttatactgttctgttcagtacttattgttttgcaaa 29785737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 179
Target Start/End: Original strand, 44649289 - 44649361
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||||||||| |||||| ||||  | |||| |||||||||||| ||| | ||| || ||||||||||||    
T  44649289 tcatgtgttgttctcccttgtattgtactgttctttcttgtactgttctgtactgtacttgccgttttgcaaa 44649361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 144
Target Start/End: Complemental strand, 47741231 - 47741191
Alignment:
Q  104 ttatcatgtgttgttctgccttgtgttgtgttattctgtct 144  Q
    |||||| ||||||||||||| ||||||||||| ||||||||    
T  47741231 ttatcacgtgttgttctgccctgtgttgtgttgttctgtct 47741191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 104 - 179
Target Start/End: Original strand, 22724663 - 22724738
Alignment:
Q  104 ttatcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||| |||||||||||||||| ||||||| |||||| |||||||||||| ||||||||| ||||  |||||||||    
T  22724663 ttatcttgtgttgttctgccttatgttgtgatattctatcttgtactgttctgtccagtacttactattttgcaaa 22724738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 21784827 - 21784758
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||||||||||||||||||  | |||| |||||||||||| ||||||||| |||| ||||||||||    
T  21784827 tgtgttgttctgccttgtgttgtactgttctatcttgtactgttttgtccagtacttactgttttgcaaa 21784758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 107 - 175
Target Start/End: Original strand, 30599144 - 30599212
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttg 175  Q
    ||||||||||||||||||||||||||  | |||| |||||||||||| ||||||||| |||| ||||||    
T  30599144 tcatgtgttgttctgccttgtgttgtactgttctatcttgtactgttctgtccagtacttactgttttg 30599212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 107 - 179
Target Start/End: Original strand, 32873905 - 32873977
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||||||||||||||||||||||  | |||| |||||||||||| ||||||||| || | ||||||||||    
T  32873905 tcatgtgttgttctgccttgtgttgtactgttctatcttgtactgttctgtccagtacttgctgttttgcaaa 32873977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 107 - 179
Target Start/End: Original strand, 36769705 - 36769777
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||| ||||||||||||||||||  | |||| |||||||||||| ||||||||| |||| ||||||||||    
T  36769705 tcatgtgctgttctgccttgtgttgtactgttctatcttgtactgttctgtccagtacttactgttttgcaaa 36769777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 112 - 179
Target Start/End: Complemental strand, 11822186 - 11822119
Alignment:
Q  112 tgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||||||||||||||||||| |||| | || ||||||||||| ||||| |||| ||||||||||    
T  11822186 tgttgttctgccttgtgttgtgttgttctattttatactgttatgttcagtacttactgttttgcaaa 11822119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 124 - 179
Target Start/End: Complemental strand, 34117415 - 34117360
Alignment:
Q  124 ttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||| ||||||| ||||||||||||||||||||||||||| |||| ||||||||||    
T  34117415 ttgtcttgtgttgttctgtcttgtactgttatgtccagtacttactgttttgcaaa 34117360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 112 - 179
Target Start/End: Original strand, 41211342 - 41211409
Alignment:
Q  112 tgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||||||||||||||||| || |||| |||||||||||| ||||||||| || | ||||||||||    
T  41211342 tgttgttctgccttgtgttgtattgttctatcttgtactgttttgtccagtacttgctgttttgcaaa 41211409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 9913485 - 9913413
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||| |||||| |||||| ||||||| |||| |||||||||||| ||| |||||||| | ||||||||||    
T  9913485 tcatgtggtgttctcccttgtattgtgttgttctttcttgtactgttctgtacagtatttgctgttttgcaaa 9913413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 9927173 - 9927101
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||| |||||| |||||| ||||||| |||| |||||||||||| ||| |||||||| | ||||||||||    
T  9927173 tcatgtggtgttctcccttgtattgtgttgttctttcttgtactgttctgtacagtatttgctgttttgcaaa 9927101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 18470643 - 18470571
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||| ||||||||||||||||||  | |||| |||||||||||| ||||||||| || | ||||||||||    
T  18470643 tcatgtgctgttctgccttgtgttgtactgttctatcttgtactgttctgtccagtacttgctgttttgcaaa 18470571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 48445481 - 48445409
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||||||| |||||||||||||||| || ||  |||||||||| ||||||||| |||| || |||||||    
T  48445481 tcatgtgttgttatgccttgtgttgtgttgttatgcattgtactgttttgtccagtacttactgtcttgcaaa 48445409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 104 - 147
Target Start/End: Complemental strand, 2048915 - 2048872
Alignment:
Q  104 ttatcatgtgttgttctgccttgtgttgtgttattctgtcttgt 147  Q
    |||||||||||||||||||||||||||||||| || ||||||||    
T  2048915 ttatcatgtgttgttctgccttgtgttgtgttgttttgtcttgt 2048872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 179
Target Start/End: Original strand, 43189389 - 43189451
Alignment:
Q  117 ttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||||||||||||  | |||| |||| ||||||||||||||||| |||| ||||||||||    
T  43189389 ttctgccttgtgttgtactgttctatcttatactgttatgtccagtacttactgttttgcaaa 43189451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 177
Target Start/End: Complemental strand, 47947719 - 47947649
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgca 177  Q
    ||||||| ||||||||||||||||||  | |||| |||||||||||| ||||||||| || | ||||||||    
T  47947719 tcatgtgctgttctgccttgtgttgtactgttctatcttgtactgttctgtccagtacttgctgttttgca 47947649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 177
Target Start/End: Complemental strand, 47953149 - 47953079
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgca 177  Q
    ||||||| ||||||||||||||||||  | |||| |||||||||||| ||||||||| || | ||||||||    
T  47953149 tcatgtgctgttctgccttgtgttgtactgttctatcttgtactgttctgtccagtacttgctgttttgca 47953079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 179
Target Start/End: Original strand, 30849385 - 30849454
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||||||| ||||||||||  | |||| |||||||||||| |||| |||| |||| ||||||||||    
T  30849385 tgtgttgttctgtcttgtgttgtactgttctatcttgtactgttctgtcaagtacttactgttttgcaaa 30849454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 46633653 - 46633584
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||||||||||||||||||  | |||| ||||||||| ||||||||| || || | ||||||||||    
T  46633653 tgtgttgttctgccttgtgttgtactgttctatcttgtactattatgtccaatacttgctgttttgcaaa 46633584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 179
Target Start/End: Complemental strand, 329422 - 329358
Alignment:
Q  115 tgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||| |||||||||||||| | |||||  |||||||||| ||||||||| |||| ||||||||||    
T  329422 tgttatgccttgtgttgtgctgttctgcattgtactgttctgtccagtacttactgttttgcaaa 329358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 179
Target Start/End: Original strand, 3892170 - 3892234
Alignment:
Q  115 tgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||||||||||||||  | |||| |||| ||||||| ||||||||| |||| ||||||||||    
T  3892170 tgttctgccttgtgttgtactgttctatcttatactgttctgtccagtacttactgttttgcaaa 3892234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 179
Target Start/End: Original strand, 10932701 - 10932765
Alignment:
Q  115 tgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||||| ||||||||  | |||| |||||||||||| ||||||||| |||| ||||||||||    
T  10932701 tgttctgccgtgtgttgtactgttctatcttgtactgttctgtccagtacttactgttttgcaaa 10932765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 18386484 - 18386412
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||||||||||||||||||||| || |||| | |||||| ||| |||||| || || | ||||||||||    
T  18386484 tcatgtgttgttctgccttgtgttgtattgttctattttgtaccgttttgtccaatacttgctgttttgcaaa 18386412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 179
Target Start/End: Original strand, 23349426 - 23349498
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||| |||||| |||| |||||| || |||| ||||||||||||||||||| || ||||  |||||||||    
T  23349426 tcatgtgctgttctaccttatgttgttttgttctatcttgtactgttatgtccattacttactattttgcaaa 23349498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 163
Target Start/End: Complemental strand, 1870096 - 1870037
Alignment:
Q  104 ttatcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagta 163  Q
    |||||||||| ||||||||||||||||||  | |||| | |||||||||||||| |||||    
T  1870096 ttatcatgtgctgttctgccttgtgttgtactgttctatattgtactgttatgtacagta 1870037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 110 - 157
Target Start/End: Complemental strand, 21133327 - 21133280
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgt 157  Q
    |||||||||||||||||||||||| | |||| ||||||| ||||||||    
T  21133327 tgtgttgttctgccttgtgttgtgatgttctttcttgtattgttatgt 21133280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 179
Target Start/End: Original strand, 22724164 - 22724239
Alignment:
Q  104 ttatcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||| |||||||||||||||| ||||||||| | || |||| |||| || ||||| ||||||||  |||||||||    
T  22724164 ttatcttgtgttgttctgccttatgttgtgttgtcctatcttatactattttgtccggtatttactattttgcaaa 22724239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 179
Target Start/End: Original strand, 3922842 - 3922911
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||| ||||||||||||||||||  |  ||| |||||||||||| ||||||||| || | ||||||||||    
T  3922842 tgtgctgttctgccttgtgttgtactggtctatcttgtactgttctgtccagtacttgctgttttgcaaa 3922911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 22631697 - 22631620
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttat-----tctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||||||||||||||||||||||||| |     | |||||||||||||| |||||| || |||  ||||||||||    
T  22631697 tcatgtgttgttctgccttgtgttgtgttgtgttgttatgtcttgtactgttctgtccaatacttattgttttgcaaa 22631620  T

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Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 179
Target Start/End: Original strand, 26994364 - 26994433
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||| ||||||||||||||||||  | |||| |||||| ||||| ||||||||| || | ||||||||||    
T  26994364 tgtgctgttctgccttgtgttgtactgttctatcttgtcctgttctgtccagtactttctgttttgcaaa 26994433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 179
Target Start/End: Complemental strand, 48894662 - 48894605
Alignment:
Q  122 ccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||||||  | ||| |||||||||||||||||| | ||||||| ||||||||||    
T  48894662 ccttgtgttgtactgttcggtcttgtactgttatgtcaaatatttactgttttgcaaa 48894605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 163
Target Start/End: Complemental strand, 1363597 - 1363541
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagta 163  Q
    |||||||||||||| |||| || |||||| |||| |||| || ||||||||||||||    
T  1363597 tcatgtgttgttctaccttctgatgtgttgttctatcttatattgttatgtccagta 1363541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 179
Target Start/End: Original strand, 11322029 - 11322093
Alignment:
Q  115 tgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||||||||||||||  | |||| |||||||||||| |||||  || |||| ||||||||||    
T  11322029 tgttctgccttgtgttgtactgttctatcttgtactgttctgtccgatacttactgttttgcaaa 11322093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 163
Target Start/End: Complemental strand, 12982262 - 12982206
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagta 163  Q
    ||||||| ||||||||||||||||||  | |||| |||||||||||| | |||||||    
T  12982262 tcatgtgctgttctgccttgtgttgtactgttctatcttgtactgttctctccagta 12982206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 179
Target Start/End: Original strand, 26371945 - 26372017
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||| |||||||  || ||||||  | |||| |||||||||||||||||||||| |||| ||||| ||||    
T  26371945 tcatgtgatgttctgttttatgttgtactgttctatcttgtactgttatgtccagtacttactgtttttcaaa 26372017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 112 - 179
Target Start/End: Original strand, 3913599 - 3913666
Alignment:
Q  112 tgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||||||||||||||||||| ||||||||| ||||||| | || ||||||||| ||||||||||    
T  3913599 tgttgttctgccttgtgttgtgttgttctgtcttatactgttctatcaagtatttactgttttgcaaa 3913666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 2086027 - 2085955
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||||||||||||||||||||||  | |||| |||||||||||| ||||||||| || | ||||||||||    
T  2086027 tcatgtgttgttctgccttgtgttgtactgttctatcttgtactgttctgtccagtacttgctgttttgcaaa 2085955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 39461269 - 39461197
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||| ||||||||||||||||||  | |||| ||||||| |||||||||||||| |||| ||||||||||    
T  39461269 tcatgtgctgttctgccttgtgttgtactgttctatcttgtattgttatgtccagtacttactgttttgcaaa 39461197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 179
Target Start/End: Original strand, 5278972 - 5279041
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||| |||||||||||||||||| || |||| |||||||||||| |||| |||| |||| ||||||||||    
T  5278972 tgtgctgttctgccttgtgttgtattgttctatcttgtactgttctgtcaagtacttactgttttgcaaa 5279041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 40692257 - 40692188
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||| |||| |||||||||||||  | |||| ||||||||||||||||| ||||||||| ||||||||||    
T  40692257 tgtgctgttttgccttgtgttgtactgttctatcttgtactgttatgtctagtatttactgttttgcaaa 40692188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 26418878 - 26418806
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||||||||||||||| |||||| | |||||||||| |||||| |||| | || |||| ||||||||||    
T  26418878 tcatgtgttgttctgccttgcgttgtgctgttctgtcttgcactgttctgtcaaatacttactgttttgcaaa 26418806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 107 - 163
Target Start/End: Complemental strand, 37308611 - 37308555
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagta 163  Q
    ||||||||||||||||||||||||||  | |||| |||||||||||| |||||||||    
T  37308611 tcatgtgttgttctgccttgtgttgtactgttctatcttgtactgttctgtccagta 37308555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 104 - 163
Target Start/End: Original strand, 26981822 - 26981881
Alignment:
Q  104 ttatcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagta 163  Q
    ||||| |||| ||||||||||||||||||| | || |||||||||||||| |||||||||    
T  26981822 ttatcctgtgctgttctgccttgtgttgtgctgttttgtcttgtactgttctgtccagta 26981881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 107 - 178
Target Start/End: Original strand, 28824691 - 28824762
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaa 178  Q
    |||||| |||||||| ||| ||||||| | |||||||||||||||||  |||||||| |||| |||||||||    
T  28824691 tcatgtattgttctgtcttatgttgtgctgttctgtcttgtactgttcagtccagtacttactgttttgcaa 28824762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 114 - 179
Target Start/End: Complemental strand, 11114821 - 11114756
Alignment:
Q  114 ttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||| ||||||||||||| |||||||||||||  ||||||  |||| |||| ||||||||||    
T  11114821 ttgttctgtcttgtgttgtgttgttctgtcttgtacaattatgtttagtacttactgttttgcaaa 11114756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 149
Target Start/End: Original strand, 12939433 - 12939478
Alignment:
Q  104 ttatcatgtgttgttctgccttgtgttgtgttattctgtcttgtac 149  Q
    ||||| |||||||||||||||||||||||| | |||||||||||||    
T  12939433 ttatcttgtgttgttctgccttgtgttgtgctgttctgtcttgtac 12939478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 13829391 - 13829322
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||| ||||||||||||||||||| | |||||  |||||||||| |||||| || |||| ||||||||||    
T  13829391 tgtgatgttctgccttgtgttgtgctgttctgctttgtactgttttgtccaataattactgttttgcaaa 13829322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 163
Target Start/End: Complemental strand, 16104226 - 16104173
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagta 163  Q
    |||||||||||||||||||||||  | |||| |||||||||||| |||||||||    
T  16104226 tgtgttgttctgccttgtgttgtactgttctatcttgtactgttttgtccagta 16104173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 179
Target Start/End: Original strand, 16178018 - 16178087
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||||||  |||||||||||||  | ||||||| |||||| ||||||||| |||| ||||||||||    
T  16178018 tgtgttgttctatcttgtgttgtgttgatatgtcttgcactgttctgtccagtacttactgttttgcaaa 16178087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 42706310 - 42706241
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||| ||||||| |||||||||| || |||| ||||||||||||||||| |||  |||| ||||||||||    
T  42706310 tgtgctgttctgtcttgtgttgtattgttctatcttgtactgttatgtcaagtgcttactgttttgcaaa 42706241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 119 - 158
Target Start/End: Complemental strand, 1247099 - 1247060
Alignment:
Q  119 ctgccttgtgttgtgttattctgtcttgtactgttatgtc 158  Q
    |||| |||||||||||| ||||||||||||||||||||||    
T  1247099 ctgctttgtgttgtgttgttctgtcttgtactgttatgtc 1247060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 110 - 177
Target Start/End: Original strand, 16062213 - 16062280
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgca 177  Q
    |||||||||||| ||| ||||||||| || |||||||||||||| |||| | || |||| ||||||||    
T  16062213 tgtgttgttctgtcttatgttgtgttgttatgtcttgtactgttttgtcaaatagttactgttttgca 16062280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 179
Target Start/End: Complemental strand, 35114731 - 35114668
Alignment:
Q  116 gttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||||||||||||  | |||| |||||||||||| ||||||||| || | ||||||||||    
T  35114731 gttctgccttgtgttgtactgttctatcttgtactgttctgtccagtacttgctgttttgcaaa 35114668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 18685788 - 18685719
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||| ||||||| ||||||||||  | |||| |||||||||||| ||||||||| || | ||||||||||    
T  18685788 tgtgctgttctgtcttgtgttgtactgttctatcttgtactgttctgtccagtacttgctgttttgcaaa 18685719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 32497867 - 32497798
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||| ||||||||||| ||||||  | |||| ||||||| |||| ||||||||| |||| ||||||||||    
T  32497867 tgtgctgttctgccttttgttgtactgttctatcttgtattgttctgtccagtacttactgttttgcaaa 32497798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 163
Target Start/End: Complemental strand, 34338762 - 34338709
Alignment:
Q  110 tgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagta 163  Q
    |||| ||||||||||||||||||  | |||| |||||||||||| |||||||||    
T  34338762 tgtgctgttctgccttgtgttgtactgttctatcttgtactgttctgtccagta 34338709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 6896124 - 6896053
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||||||| |||||||||||||||| |||||  || ||||||| |||  |||| |||| ||||||||||    
T  6896124 tcatgtgttgttatgccttgtgttgtgttgttctgcattatactgttctgt-tagtacttactgttttgcaaa 6896053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 17540669 - 17540597
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||| ||||||||||||||||||  | |||| |||| ||||||| | ||||||| || | ||||||||||    
T  17540669 tcatgtgctgttctgccttgtgttgtactgttctatcttatactgttctatccagtacttgctgttttgcaaa 17540597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 179
Target Start/End: Original strand, 27462934 - 27463006
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||||||||| |||||||||||| | |||||| ||| |||||| | |||| || || | ||||||||||    
T  27462934 tcatgtgttgttctaccttgtgttgtgctgttctgttttgcactgttttatccaatacttgctgttttgcaaa 27463006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0208 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0208
Description:

Target: scaffold0208; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 107 - 179
Target Start/End: Original strand, 2479 - 2551
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||| ||||||||||||||||||  |||||| |||||||||||| ||||||||| || | ||||||||||    
T  2479 tcatgtgctgttctgccttgtgttgtactattctatcttgtactgttctgtccagtacttgctgttttgcaaa 2551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 115 - 179
Target Start/End: Complemental strand, 23524 - 23460
Alignment:
Q  115 tgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    |||||||||||||||||| || |||| |||||||||||| |||||||||||| | ||||||||||    
T  23524 tgttctgccttgtgttgtattgttctatcttgtactgttctgtccagtatttgctgttttgcaaa 23460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0957 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0957
Description:

Target: scaffold0957; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 107 - 163
Target Start/End: Original strand, 2636 - 2692
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagta 163  Q
    |||||||||||||| ||||||||||| || |||| |||| |||||||||||||||||    
T  2636 tcatgtgttgttctaccttgtgttgtattgttctatcttatactgttatgtccagta 2692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 15127 - 15055
Alignment:
Q  107 tcatgtgttgttctgccttgtgttgtgttattctgtcttgtactgttatgtccagtatttaccgttttgcaaa 179  Q
    ||||||||||||||||||| ||||||  | |||| | |||||||||| ||||| ||| |||| ||||||||||    
T  15127 tcatgtgttgttctgccttatgttgtactgttctattttgtactgttctgtccggtacttactgttttgcaaa 15055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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