View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18285_high_2 (Length: 750)
Name: NF18285_high_2
Description: NF18285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18285_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 131; Significance: 1e-67; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 214 - 501
Target Start/End: Original strand, 4150046 - 4150329
Alignment:
| Q |
214 |
agagtgatagaattgattttaccttatatcaaatgttatgaaacataaacacaaacatacaaaccggacacgaaaccaacatctatatgcagacaccgat |
313 |
Q |
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| T |
4150046 |
agagtgttagaattgattttaccttctatcaaatgatatgaaacattgacacaaacatacaaaccgaacacggcacccacatctatacgtagacactgaa |
4150145 |
T |
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| Q |
314 |
aacaattaaggaaaattgaagtgattgtatgtaaccacacttattagc-tcatgttggtgtgagatgctgaaacgtgacagactcggacaccttgaattt |
412 |
Q |
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| T |
4150146 |
aacaattaaagaaaattgatgtgattgtatgaaatcacacctattaacatcatggtggtgtgagacattgaaacgtgacggactctgacacc------tt |
4150239 |
T |
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| Q |
413 |
gaatttgaagtgtcattgctacatatatcaaatgttattttaataatagtaattttgtttggcttg-aaattttacattaatatttgcat |
501 |
Q |
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| T |
4150240 |
aaatttaaagtgtcactactacatagatcaaatgttattttaataatagtaattttgtttggcttgaaaattttacattaatatttgcat |
4150329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 633 - 706
Target Start/End: Original strand, 4150536 - 4150609
Alignment:
| Q |
633 |
atatgatggaagattgtgatgcttcaagaaattcaagatatctgtagaaaataagcagttgaaagatcaaagca |
706 |
Q |
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| T |
4150536 |
atatgttgcaagattgtaatgcttcaagacattcaagatatctgtagaaaataagcagttgaaagatcaaagca |
4150609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 86; Significance: 1e-40; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 96 - 197
Target Start/End: Complemental strand, 2492871 - 2492770
Alignment:
| Q |
96 |
actttattggattctcttgcttcaaacgtggttgatcaccatggattttaccaaaccattgcaggagaaaactccagcagggtttatggttcaatattat |
195 |
Q |
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| T |
2492871 |
actttattgaattctcttgcttcaaacgtggttgatcaccatggattttaccaaaccattgcaggagaaaacaacagcaggatttatggttcaatattat |
2492772 |
T |
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| Q |
196 |
gt |
197 |
Q |
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| T |
2492771 |
gt |
2492770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 99 - 197
Target Start/End: Complemental strand, 2489587 - 2489489
Alignment:
| Q |
99 |
ttattggattctcttgcttcaaacgtggttgatcaccatggattttaccaaaccattgcaggagaaaactccagcagggtttatggttcaatattatgt |
197 |
Q |
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| T |
2489587 |
ttattggattctcttgcttcaaatgtggttgatcaccaaggattttaccaaaccactgtaggagaaaactccagcagggtttatggttcaatattatgt |
2489489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 99 - 197
Target Start/End: Complemental strand, 2495998 - 2495900
Alignment:
| Q |
99 |
ttattggattctcttgcttcaaacgtggttgatcaccatggattttaccaaaccattgcaggagaaaactccagcagggtttatggttcaatattatgt |
197 |
Q |
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| T |
2495998 |
ttattggattctcttgcttcaaacgtcgttgatagccatggattttaccaaaccattgtaggaaaaaagcctaacaggctttatggtacaatattatgt |
2495900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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