View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18285_high_20 (Length: 245)

Name: NF18285_high_20
Description: NF18285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18285_high_20
NF18285_high_20
[»] chr5 (9 HSPs)
chr5 (1-227)||(93401-93627)
chr5 (3-227)||(87552-87777)
chr5 (47-121)||(5147412-5147487)
chr5 (142-212)||(93622-93691)
chr5 (150-212)||(87922-87983)
chr5 (60-121)||(15898608-15898669)
chr5 (62-121)||(35667015-35667074)
chr5 (62-120)||(38979037-38979095)
chr5 (60-120)||(39060868-39060928)
[»] chr7 (3 HSPs)
chr7 (38-121)||(37264419-37264503)
chr7 (47-120)||(32971934-32972008)
chr7 (1-35)||(36070172-36070206)
[»] scaffold0155 (1 HSPs)
scaffold0155 (1-120)||(7838-7960)
[»] chr2 (1 HSPs)
chr2 (47-116)||(6972461-6972531)
[»] chr1 (6 HSPs)
chr1 (6-86)||(14090712-14090793)
chr1 (62-121)||(29225321-29225380)
chr1 (62-120)||(50926880-50926938)
chr1 (48-91)||(13409724-13409768)
chr1 (38-120)||(24131318-24131402)
chr1 (38-85)||(42309536-42309584)
[»] chr8 (1 HSPs)
chr8 (47-120)||(32231302-32231376)
[»] chr3 (1 HSPs)
chr3 (62-102)||(46785914-46785954)


Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 93401 - 93627
Alignment:
Q  1 agaataatgcaccaatatttgtcaaagacactcaattatttttctatctttcactttatattttttcttaatagatgtgaaatgagtaaaagactcattt 100  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  93401 agaataatgtaccaatatttgtcaaagacactcaattatttttctatctttcactttatattttttcttaatagatgtgaaatgagtaaaagactcattt 93500  T
Q  101 aaaatgtgatggagggagtaaaagcaacttaaatatggtaaaatatcatcattaatgtttgcttccaaagtggtcatcatatcatcattattacaagata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  93501 aaaatgtgatggagggagtaaaagcaacttaaatatggtaaaatatcatcattaatgtttgcttccaaagtggtcatcatatcatcattattacaagata 93600  T
Q  201 ccttaacttttttactaaagtaatatc 227  Q
    |||||||||||||||||||||||||||    
T  93601 ccttaacttttttactaaagtaatatc 93627  T

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Target: chr5; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 3 - 227
Target Start/End: Original strand, 87552 - 87777
Alignment:
Q  3 aataatgcaccaatatttgtcaaagacactcaattatttttctatctttcactttatat-tttttcttaatagatgtgaaatgagtaaaagactcattta 101  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  87552 aataatgcactaatatttgtcaaagacactcaactatttttctatctttcactttatatatttttcttaatagatgtgaaatgagtaaaaggctcattta 87651  T
Q  102 aaatgtgatggagggagtaaaagcaacttaaatatggtaaaatatcatcattaatgtttgcttccaaagtggtcatcatatcatcattattacaagatac 201  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  87652 aaatgtgatggagggagtaaaagcaacttaaatatggtaaaataacatcattaatgtttgctttcaaagtggtcatcatatcatcattattacaagatac 87751  T
Q  202 cttaacttttttactaaagtaatatc 227  Q
    ||||||||||||||||||||||||||    
T  87752 cttaacttttttactaaagtaatatc 87777  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 47 - 121
Target Start/End: Complemental strand, 5147487 - 5147412
Alignment:
Q  47 tctttcactt-tatattttttcttaatagatgtgaaatgagtaaaagactcatttaaaatgtgatggagggagtaa 121  Q
    |||||||||| |||||||||||||||||  |||||||||||| ||||||||| |||||||| || |||||||||||    
T  5147487 tctttcacttatatattttttcttaataagtgtgaaatgagtcaaagactcagttaaaatgggacggagggagtaa 5147412  T

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Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 142 - 212
Target Start/End: Original strand, 93622 - 93691
Alignment:
Q  142 aatatcatcattaatgtttgcttccaaagtggtcatcatatcatcattattacaagataccttaacttttt 212  Q
    ||||||| ||||||||||||||| |||||||  |||||||||||| |||||||||| ||||||||||||||    
T  93622 aatatcaacattaatgtttgcttgcaaagtgaccatcatatcatc-ttattacaaggtaccttaacttttt 93691  T

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Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 212
Target Start/End: Original strand, 87922 - 87983
Alignment:
Q  150 cattaatgtttgcttccaaagtggtcatcatatcatcattattacaagataccttaacttttt 212  Q
    ||||||||||||||| |||||||  |||||||||||| |||||||||| ||||||||||||||    
T  87922 cattaatgtttgcttgcaaagtgaccatcatatcatc-ttattacaaggtaccttaacttttt 87983  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 121
Target Start/End: Original strand, 15898608 - 15898669
Alignment:
Q  60 attttttcttaatagatgtgaaatgagtaaaagactcatttaaaatgtgatggagggagtaa 121  Q
    ||||||||||||||  ||||||||||   |||||||||||||||||| || |||||||||||    
T  15898608 attttttcttaataagtgtgaaatgaactaaagactcatttaaaatgggacggagggagtaa 15898669  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 121
Target Start/End: Original strand, 35667015 - 35667074
Alignment:
Q  62 tttttcttaatagatgtgaaatgagtaaaagactcatttaaaatgtgatggagggagtaa 121  Q
    |||||||||||| ||||||||||||| ||||||||| ||||| || ||  ||||||||||    
T  35667015 tttttcttaataaatgtgaaatgagtgaaagactcacttaaattgggagagagggagtaa 35667074  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 120
Target Start/End: Original strand, 38979037 - 38979095
Alignment:
Q  62 tttttcttaatagatgtgaaatgagtaaaagactcatttaaaatgtgatggagggagta 120  Q
    ||||||||||||  ||||||||||||||| | |||| |||||||| || ||||||||||    
T  38979037 tttttcttaataagtgtgaaatgagtaaatggctcagttaaaatgggacggagggagta 38979095  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 120
Target Start/End: Complemental strand, 39060928 - 39060868
Alignment:
Q  60 attttttcttaatagatgtgaaatgagtaaaagactcatttaaaatgtgatggagggagta 120  Q
    ||||||||||||||  |||||||||||| |||| || | |||||||| || ||||||||||    
T  39060928 attttttcttaataagtgtgaaatgagtcaaagtctaaattaaaatgggacggagggagta 39060868  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 121
Target Start/End: Original strand, 37264419 - 37264503
Alignment:
Q  38 atttttctatctttcactt-tatattttttcttaatagatgtgaaatgagtaaaagactcatttaaaatgtgatggagggagtaa 121  Q
    |||||||| |||||||||| |||| ||||||||||||  ||||||||||| ||||| |||| |||||||| || |||||||||||    
T  37264419 atttttctctctttcacttatatactttttcttaatatgtgtgaaatgagcaaaaggctcacttaaaatgggacggagggagtaa 37264503  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 120
Target Start/End: Complemental strand, 32972008 - 32971934
Alignment:
Q  47 tctttcactt-tatattttttcttaatagatgtgaaatgagtaaaagactcatttaaaatgtgatggagggagta 120  Q
    |||||||||| || ||||||||||||||  |||||||||||| || |||||| ||||||||  | ||||||||||    
T  32972008 tctttcacttatacattttttcttaataagtgtgaaatgagtcaatgactcaattaaaatggaacggagggagta 32971934  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 36070172 - 36070206
Alignment:
Q  1 agaataatgcaccaatatttgtcaaagacactcaa 35  Q
    ||||||||||||||||||||| |||||||||||||    
T  36070172 agaataatgcaccaatatttgacaaagacactcaa 36070206  T

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Target: scaffold0155 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 7960 - 7838
Alignment:
Q  1 agaataatgcaccaatatttgtcaaagacactcaa--ttatttttctatctttcactt-tatattttttcttaatagatgtgaaatgagtaaaagactca 97  Q
    |||| |||||||||||| |||  |||| |||||||  | |||||||| ||||||| || || |||||||||||||| ||||||||||||| || | ||||    
T  7960 agaaaaatgcaccaatagttgataaaggcactcaaaataatttttctctctttcatttatacattttttcttaataaatgtgaaatgagtcaagggctca 7861  T
Q  98 tttaaaatgtgatggagggagta 120  Q
     |||||||  || ||||||||||    
T  7860 attaaaataggacggagggagta 7838  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 47 - 116
Target Start/End: Complemental strand, 6972531 - 6972461
Alignment:
Q  47 tctttcactt-tatattttttcttaatagatgtgaaatgagtaaaagactcatttaaaatgtgatggaggg 116  Q
    |||||||||| || ||||||||||||||  |||||||||||| ||||||||| |||||||| || ||||||    
T  6972531 tctttcacttatacattttttcttaataagtgtgaaatgagtcaaagactcagttaaaatgggacggaggg 6972461  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 86
Target Start/End: Original strand, 14090712 - 14090793
Alignment:
Q  6 aatgcaccaatatttgtcaaagacactcaattatttttctatctttcactt-tatattttttcttaatagatgtgaaatgag 86  Q
    |||||||||||| |||  ||||||| |||| ||||||||| |||||||||| || ||||| ||||||||  |||||||||||    
T  14090712 aatgcaccaatagttgataaagacaatcaactatttttctctctttcacttatacattttgtcttaataagtgtgaaatgag 14090793  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 121
Target Start/End: Complemental strand, 29225380 - 29225321
Alignment:
Q  62 tttttcttaatagatgtgaaatgagtaaaagactcatttaaaatgtgatggagggagtaa 121  Q
    ||||||||||||  ||||||||||| |||||||||| ||| |||| || |||||||||||    
T  29225380 tttttcttaatatgtgtgaaatgagcaaaagactcaattataatgggacggagggagtaa 29225321  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 120
Target Start/End: Original strand, 50926880 - 50926938
Alignment:
Q  62 tttttcttaatagatgtgaaatgagtaaaagactcatttaaaatgtgatggagggagta 120  Q
    |||||||||||| |||||||||||| ||||  |||| |||||||| || ||||||||||    
T  50926880 tttttcttaatatatgtgaaatgagaaaaaagctcagttaaaatgagacggagggagta 50926938  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 91
Target Start/End: Complemental strand, 13409768 - 13409724
Alignment:
Q  48 ctttcactt-tatattttttcttaatagatgtgaaatgagtaaaa 91  Q
    ||||||||| ||||||||||||||||| ||||||||||| |||||    
T  13409768 ctttcacttatatattttttcttaatatatgtgaaatgaataaaa 13409724  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 120
Target Start/End: Complemental strand, 24131402 - 24131318
Alignment:
Q  38 atttttctatctttcactt-tatattttttcttaatagatgtgaaatgagt-aaaagactcatttaaaatgtgatggagggagta 120  Q
    |||||||| |||||||||| ||   ||||||||||||  |||||||||||| ||| |||||| |||||||| || ||||||||||    
T  24131402 atttttctctctttcacttatacgctttttcttaataagtgtgaaatgagtcaaatgactcagttaaaatgggacggagggagta 24131318  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 85
Target Start/End: Original strand, 42309536 - 42309584
Alignment:
Q  38 atttttctatctttcactt-tatattttttcttaatagatgtgaaatga 85  Q
    |||||||  |||||||||| ||||||||||||||||| |||||||||||    
T  42309536 atttttcactctttcacttatatattttttcttaatatatgtgaaatga 42309584  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 120
Target Start/End: Complemental strand, 32231376 - 32231302
Alignment:
Q  47 tctttcactt-tatattttttcttaatagatgtgaaatgagtaaaagactcatttaaaatgtgatggagggagta 120  Q
    |||||||||| || |||||||||||||| ||||||||||||  || | |||| |||||||| || ||||||||||    
T  32231376 tctttcacttatacattttttcttaataaatgtgaaatgagacaagggctcaattaaaatgggacggagggagta 32231302  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 102
Target Start/End: Complemental strand, 46785954 - 46785914
Alignment:
Q  62 tttttcttaatagatgtgaaatgagtaaaagactcatttaa 102  Q
    |||||||||||| |||||||||||||||| |||||| ||||    
T  46785954 tttttcttaatatatgtgaaatgagtaaatgactcagttaa 46785914  T

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