View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18285_high_21 (Length: 241)
Name: NF18285_high_21
Description: NF18285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18285_high_21 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 227
Target Start/End: Original strand, 31576953 - 31577161
Alignment:
| Q |
19 |
attataccattaatcatgaattctgttttattctgtgtatggtaaggtatataaaatattatatactagaaactaaactatttctcactgtataaggcga |
118 |
Q |
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| T |
31576953 |
attataccattaatcatgaattctgttttattctgtgtatggtaaggtatataaaatattatatactagaaactaaactatttctcactgtataaggcga |
31577052 |
T |
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| Q |
119 |
cgatgatactgctatttaatattattttcttggacgtaatagtatggtactgttatttgattcttgcagcctactattaactaatggtatcctcaccaac |
218 |
Q |
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| T |
31577053 |
cgatgatactgctatttgatattattttcttggacgtaatagtatggtactgttatttgattcttgcagcctactattaactaattgtatcttcaccaac |
31577152 |
T |
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| Q |
219 |
atatatatt |
227 |
Q |
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||||||||| |
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| T |
31577153 |
atatatatt |
31577161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 85 - 230
Target Start/End: Original strand, 28426502 - 28426652
Alignment:
| Q |
85 |
tagaaactaaactatttctcactgtataaggcgacgatgatactgctatttaatattattttcttggacg--------taatagtatggtactgttattt |
176 |
Q |
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||||||||||||||||||||| | |||||||| |||||||||| ||||| |||||||||||||||||| ||||||||| |||||| ||| | |
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| T |
28426502 |
tagaaactaaactatttctca---tgtaaggcgatgatgatactgatatttgatattattttcttggacgtaatagactaatagtatagtactgctatat |
28426598 |
T |
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| Q |
177 |
gattcttgcagcctactattaactaatggtatcctcaccaacatatatattctt |
230 |
Q |
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| T |
28426599 |
gattctttcagcctactattaatcaattttattctcaccaacatataaattctt |
28426652 |
T |
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