View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18285_high_24 (Length: 214)

Name: NF18285_high_24
Description: NF18285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18285_high_24
NF18285_high_24
[»] chr5 (20 HSPs)
chr5 (1-203)||(700364-700566)
chr5 (1-56)||(24181534-24181589)
chr5 (1-56)||(41459719-41459774)
chr5 (1-54)||(31770503-31770556)
chr5 (1-56)||(32528846-32528901)
chr5 (1-56)||(34795018-34795073)
chr5 (1-56)||(37148499-37148554)
chr5 (1-40)||(2351811-2351850)
chr5 (1-56)||(7523303-7523358)
chr5 (1-56)||(8136968-8137023)
chr5 (1-56)||(11963472-11963527)
chr5 (1-56)||(17031288-17031343)
chr5 (1-56)||(27838984-27839039)
chr5 (1-56)||(39918638-39918693)
chr5 (11-56)||(5673271-5673316)
chr5 (1-46)||(31644576-31644621)
chr5 (1-41)||(5598611-5598651)
chr5 (1-41)||(29241509-29241549)
chr5 (1-41)||(31880001-31880041)
chr5 (1-41)||(35701408-35701448)
[»] chr6 (13 HSPs)
chr6 (1-56)||(15276880-15276935)
chr6 (1-56)||(3259814-3259869)
chr6 (1-56)||(166866-166921)
chr6 (3-56)||(3290792-3290845)
chr6 (1-56)||(3932750-3932805)
chr6 (1-56)||(10960131-10960186)
chr6 (1-56)||(11382193-11382248)
chr6 (1-56)||(23636354-23636409)
chr6 (1-56)||(24203493-24203548)
chr6 (1-48)||(24242795-24242842)
chr6 (1-46)||(11212388-11212433)
chr6 (1-46)||(11675327-11675372)
chr6 (1-41)||(10324069-10324109)
[»] chr3 (22 HSPs)
chr3 (1-54)||(53557695-53557748)
chr3 (1-56)||(24721617-24721672)
chr3 (1-46)||(25927235-25927280)
chr3 (1-46)||(39052746-39052791)
chr3 (1-56)||(3695205-3695260)
chr3 (1-56)||(20255176-20255231)
chr3 (1-56)||(20609546-20609601)
chr3 (1-56)||(24571413-24571468)
chr3 (1-56)||(49748809-49748864)
chr3 (1-56)||(51259678-51259733)
chr3 (8-56)||(8253812-8253860)
chr3 (1-56)||(2135202-2135257)
chr3 (1-56)||(5442411-5442466)
chr3 (1-56)||(25860319-25860374)
chr3 (1-56)||(29646198-29646253)
chr3 (1-56)||(31882920-31882975)
chr3 (1-56)||(34026799-34026854)
chr3 (1-56)||(40094635-40094690)
chr3 (1-56)||(50386354-50386409)
chr3 (1-46)||(4851366-4851411)
chr3 (1-46)||(21221269-21221314)
chr3 (1-46)||(29585007-29585052)
[»] chr8 (21 HSPs)
chr8 (1-56)||(5968783-5968838)
chr8 (1-41)||(27104090-27104130)
chr8 (1-56)||(32019920-32019975)
chr8 (1-56)||(37474831-37474886)
chr8 (1-56)||(45446586-45446641)
chr8 (1-56)||(8672974-8673029)
chr8 (1-56)||(10467195-10467250)
chr8 (1-56)||(12753244-12753299)
chr8 (1-56)||(13406854-13406909)
chr8 (1-56)||(29610974-29611029)
chr8 (1-56)||(30542941-30542996)
chr8 (5-56)||(34063263-34063314)
chr8 (1-56)||(34101639-34101694)
chr8 (1-40)||(37861990-37862029)
chr8 (1-56)||(40389171-40389226)
chr8 (1-56)||(41709908-41709963)
chr8 (1-55)||(32303528-32303582)
chr8 (1-54)||(3251577-3251630)
chr8 (1-46)||(4052611-4052656)
chr8 (5-46)||(10531415-10531456)
chr8 (1-46)||(22756340-22756385)
[»] chr7 (17 HSPs)
chr7 (1-56)||(21785006-21785061)
chr7 (1-56)||(10932462-10932517)
chr7 (1-56)||(21133507-21133562)
chr7 (1-56)||(46633827-46633882)
chr7 (1-55)||(16027833-16027887)
chr7 (1-46)||(44748830-44748875)
chr7 (1-41)||(1870270-1870310)
chr7 (4-48)||(11321798-11321842)
chr7 (1-56)||(3922608-3922663)
chr7 (1-56)||(26994130-26994185)
chr7 (1-48)||(40753290-40753337)
chr7 (1-56)||(43158591-43158646)
chr7 (1-56)||(47316603-47316658)
chr7 (1-46)||(47953325-47953370)
chr7 (1-41)||(18470817-18470857)
chr7 (1-41)||(36769489-36769529)
chr7 (1-53)||(43189150-43189202)
[»] chr4 (34 HSPs)
chr4 (1-56)||(36497351-36497406)
chr4 (1-56)||(36743585-36743640)
chr4 (1-46)||(4325925-4325970)
chr4 (1-46)||(33552749-33552794)
chr4 (1-56)||(1231445-1231500)
chr4 (1-56)||(2787098-2787153)
chr4 (1-56)||(20517919-20517974)
chr4 (1-56)||(23522014-23522069)
chr4 (1-56)||(29785434-29785489)
chr4 (1-56)||(38486154-38486209)
chr4 (1-56)||(44324239-44324294)
chr4 (1-56)||(50727810-50727865)
chr4 (1-56)||(50735824-50735879)
chr4 (1-55)||(9512238-9512292)
chr4 (1-46)||(36886066-36886111)
chr4 (1-54)||(55065231-55065284)
chr4 (1-41)||(52319457-52319497)
chr4 (1-56)||(2629848-2629903)
chr4 (1-56)||(3649770-3649825)
chr4 (1-56)||(12601020-12601075)
chr4 (1-56)||(23328030-23328085)
chr4 (1-56)||(29616300-29616355)
chr4 (1-56)||(37865887-37865942)
chr4 (1-56)||(39078795-39078850)
chr4 (1-56)||(42870105-42870160)
chr4 (1-56)||(46680407-46680462)
chr4 (1-56)||(47642388-47642443)
chr4 (1-56)||(52949854-52949909)
chr4 (5-48)||(54543127-54543170)
chr4 (1-46)||(21202873-21202918)
chr4 (1-54)||(33176931-33176984)
chr4 (1-46)||(38812654-38812699)
chr4 (1-41)||(28115385-28115425)
chr4 (1-41)||(50186662-50186702)
[»] scaffold0957 (1 HSPs)
scaffold0957 (1-56)||(2406-2461)
[»] scaffold0004 (1 HSPs)
scaffold0004 (1-56)||(372874-372929)
[»] chr2 (23 HSPs)
chr2 (1-56)||(7259028-7259083)
chr2 (1-56)||(9717332-9717387)
chr2 (1-56)||(18793197-18793252)
chr2 (1-56)||(37863270-37863325)
chr2 (1-56)||(42365708-42365763)
chr2 (1-54)||(3913366-3913419)
chr2 (1-54)||(5278740-5278793)
chr2 (1-56)||(4641645-4641700)
chr2 (1-56)||(7761477-7761532)
chr2 (1-56)||(9732834-9732889)
chr2 (1-56)||(16177787-16177842)
chr2 (1-56)||(18685967-18686022)
chr2 (1-56)||(19513593-19513648)
chr2 (1-56)||(33366741-33366796)
chr2 (1-56)||(33889374-33889429)
chr2 (1-56)||(34338941-34338996)
chr2 (1-40)||(35114916-35114955)
chr2 (1-56)||(37308786-37308841)
chr2 (1-56)||(44284760-44284815)
chr2 (1-55)||(16104405-16104459)
chr2 (1-46)||(30798402-30798447)
chr2 (1-41)||(2645006-2645046)
chr2 (1-41)||(32498046-32498086)
[»] chr1 (25 HSPs)
chr1 (1-56)||(16451267-16451322)
chr1 (1-56)||(26118194-26118249)
chr1 (1-56)||(35387290-35387345)
chr1 (1-41)||(16437502-16437542)
chr1 (1-56)||(844703-844758)
chr1 (1-56)||(1351414-1351469)
chr1 (5-56)||(3414832-3414883)
chr1 (1-56)||(6711025-6711080)
chr1 (1-56)||(7837273-7837328)
chr1 (1-56)||(16386994-16387049)
chr1 (1-56)||(17327628-17327683)
chr1 (1-48)||(17888088-17888135)
chr1 (1-56)||(32270493-32270548)
chr1 (1-56)||(32289323-32289378)
chr1 (1-56)||(45658961-45659016)
chr1 (1-51)||(12890378-12890428)
chr1 (1-46)||(5109868-5109913)
chr1 (1-46)||(24339627-24339672)
chr1 (7-56)||(46155053-46155102)
chr1 (1-46)||(49303343-49303388)
chr1 (1-41)||(28340297-28340337)
chr1 (1-41)||(30105674-30105714)
chr1 (1-41)||(41973051-41973091)
chr1 (1-45)||(50382390-50382434)
chr1 (1-45)||(50540484-50540528)
[»] scaffold0360 (1 HSPs)
scaffold0360 (1-41)||(15298-15338)
[»] scaffold0027 (1 HSPs)
scaffold0027 (1-56)||(15303-15358)
[»] scaffold0014 (1 HSPs)
scaffold0014 (1-56)||(102080-102135)
[»] scaffold0054 (1 HSPs)
scaffold0054 (1-46)||(23706-23751)


Alignment Details
Target: chr5 (Bit Score: 133; Significance: 2e-69; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 700566 - 700364
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttcannnnnnnagcaaaaactaagttgacgaaaattacaatacactaa 100  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||||| |||||         ||||||||||||||||||||||||||||||||| |||    
T  700566 aaacagttttacaaatcaatcattgaacaactagagttgttttgtcatgtccttattttttttagcaaaaactaagttgacgaaaattacaatacattaa 700467  T
Q  101 tcatagtttacaatataaactatacatgtgacaaacatttgatatttctaaacgttcttacttatctttacctagnnnnnnngagtcttagattcagttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||       ||||||||||||||||||    
T  700466 tcatagtttacaatataaactatacatgtgacaaacatttgatatttataaacgttcttacttatctttacctagaaaaaaagagtcttagattcagttt 700367  T
Q  201 cat 203  Q
    |||    
T  700366 cat 700364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 24181589 - 24181534
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||||||| |  |||||||||||||||||||||| |||||||    
T  24181589 aaacagttttacaaatcaaacactggacaactagagttgttttgtcatgtccttca 24181534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 41459719 - 41459774
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||||| | |||||||||||||||||| |||||| |||||||    
T  41459719 aaacagttttacaaatcaaatactaaacaactagagttgttctgtcatgtccttca 41459774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 31770556 - 31770503
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatcctt 54  Q
    |||||||||||||||||||||| | |||||||||||||||| |||||| |||||    
T  31770556 aaacagttttacaaatcaaacactgaacaactagagttgttatgtcatgtcctt 31770503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 32528846 - 32528901
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||||||| | |||||||||||||||  |||||| |||||||    
T  32528846 aaacagttttacaaatcaaacactgaacaactagagttgtcctgtcatgtccttca 32528901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 34795018 - 34795073
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||||| |||  ||||||||||||||| |||||| |||||||    
T  34795018 aaacagttttacaaatcaaatattggacaactagagttgttctgtcatgtccttca 34795073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 37148554 - 37148499
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||||||| |  |||||| |||||||| ||||||||||||||    
T  37148554 aaacagttttacaaatcaaacaattgacaactggagttgttctgtcatatccttca 37148499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 2351811 - 2351850
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgt 40  Q
    |||||||||||||||||||||| | |||||||||||||||    
T  2351811 aaacagttttacaaatcaaacactgaacaactagagttgt 2351850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 7523303 - 7523358
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||||||| |  ||||||||| ||||| |||| |||||||||    
T  7523303 aaacagttttacaaatcaaacactggacaactagaattgttctgtcctatccttca 7523358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 8136968 - 8137023
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    ||||||||||||||| |||||| |  ||||||||||||||| |||| |||||||||    
T  8136968 aaacagttttacaaaacaaacactggacaactagagttgttctgtcctatccttca 8137023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 11963472 - 11963527
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||||||| |  ||||||||||||||| |||| | |||||||    
T  11963472 aaacagttttacaaatcaaacactggacaactagagttgttctgtcctgtccttca 11963527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 17031288 - 17031343
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    ||||||||||||||||||||||||| |||| | ||||||| ||||| | |||||||    
T  17031288 aaacagttttacaaatcaaacattatacaagtggagttgtgttgtcttgtccttca 17031343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 27839039 - 27838984
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||||||| |  |||||| |||||||| |||||| |||||||    
T  27839039 aaacagttttacaaatcaaacactggacaactggagttgttctgtcatgtccttca 27838984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 39918638 - 39918693
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||||||| |  |||||||||||||| ||||| | |||||||    
T  39918638 aaacagttttacaaatcaaacactggacaactagagttgtcttgtcctgtccttca 39918693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 5673271 - 5673316
Alignment:
Q  11 acaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    ||||||||||||| ||||||||||||||||| |||| | |||||||    
T  5673271 acaaatcaaacatcaaacaactagagttgttatgtcttgtccttca 5673316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 31644576 - 31644621
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtc 46  Q
    |||||||||||||||||||||| |  ||||||||||||||| ||||    
T  31644576 aaacagttttacaaatcaaacactggacaactagagttgttctgtc 31644621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 5598611 - 5598651
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgtt 41  Q
    ||||||||||||||||||||||||  |||||| ||||||||    
T  5598611 aaacagttttacaaatcaaacattggacaacttgagttgtt 5598651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 29241509 - 29241549
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgtt 41  Q
    |||||||||||||||||||||| |  |||||||||||||||    
T  29241509 aaacagttttacaaatcaaacactggacaactagagttgtt 29241549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 31880041 - 31880001
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgtt 41  Q
    |||||||||||| ||||||||| | ||||||||||||||||    
T  31880041 aaacagttttactaatcaaacactgaacaactagagttgtt 31880001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 35701408 - 35701448
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgtt 41  Q
    |||||||||||||||||||||| |  |||||||||||||||    
T  35701408 aaacagttttacaaatcaaacactggacaactagagttgtt 35701448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 15276935 - 15276880
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||    
T  15276935 aaacagttttacaaatcaaacattagacaactagagttgttctgtcatgtccttca 15276880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 3259814 - 3259869
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||||||| |  |||||||||||||||||||||| |||||||    
T  3259814 aaacagttttacaaatcaaacactggacaactagagttgttttgtcatgtccttca 3259869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 166921 - 166866
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||||||| |  |||| |||||||||| ||||||||||||||    
T  166921 aaacagttttacaaatcaaacactggacaagtagagttgttctgtcatatccttca 166866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 3290792 - 3290845
Alignment:
Q  3 acagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||| ||||||||||||| | |||||||||||||||| |||||| |||||||    
T  3290792 acagttatacaaatcaaacactgaacaactagagttgttctgtcatgtccttca 3290845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 3932805 - 3932750
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||||||| | |||||||||| ||||| |||| | |||||||    
T  3932805 aaacagttttacaaatcaaacactgaacaactagaattgttctgtcctgtccttca 3932750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 10960131 - 10960186
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||||||| |  |||||| |||||||| |||| |||||||||    
T  10960131 aaacagttttacaaatcaaacactggacaactggagttgttctgtcctatccttca 10960186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 11382193 - 11382248
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||| ||||| |  ||||||||||||||| |||||| |||||||    
T  11382193 aaacagttttacaaattaaacactggacaactagagttgttctgtcatgtccttca 11382248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 23636354 - 23636409
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    ||||| |||||||||||||||| | |||||||  ||||||| ||||||||||||||    
T  23636354 aaacaattttacaaatcaaacactgaacaactgaagttgttctgtcatatccttca 23636409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 24203493 - 24203548
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||||||| |  ||||||| ||||||| |||||| |||||||    
T  24203493 aaacagttttacaaatcaaacactggacaactatagttgttctgtcatgtccttca 24203548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 24242795 - 24242842
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcat 48  Q
    |||||||||||||||||||||| |  ||||||||||||||| ||||||    
T  24242795 aaacagttttacaaatcaaacactggacaactagagttgttctgtcat 24242842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 11212388 - 11212433
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtc 46  Q
    |||||||||||||||||||||| |  ||||||||||||||| ||||    
T  11212388 aaacagttttacaaatcaaacactggacaactagagttgttctgtc 11212433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 11675372 - 11675327
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtc 46  Q
    |||||||||||||||||||||| | ||||||| || ||||||||||    
T  11675372 aaacagttttacaaatcaaacactgaacaactggaattgttttgtc 11675327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 10324109 - 10324069
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgtt 41  Q
    |||||||||||||||| ||||| | ||||||||||||||||    
T  10324109 aaacagttttacaaattaaacactgaacaactagagttgtt 10324069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 53557748 - 53557695
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatcctt 54  Q
    |||||||||||||||||||||||| |||||||||||||| | ||||||||||||    
T  53557748 aaacagttttacaaatcaaacattgaacaactagagttgctctgtcatatcctt 53557695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 24721617 - 24721672
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||||||| | |||||||||||||||| |||||| |||||||    
T  24721617 aaacagttttacaaatcaaacactgaacaactagagttgttctgtcatgtccttca 24721672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 25927280 - 25927235
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtc 46  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||    
T  25927280 aaacagttttacaaatcaaacattagacaactagagttgttctgtc 25927235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 39052791 - 39052746
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtc 46  Q
    |||||||||||||||||||||| || ||||||||||||||||||||    
T  39052791 aaacagttttacaaatcaaacactagacaactagagttgttttgtc 39052746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 3695260 - 3695205
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||||||| |  |||||||||||||||||||| | |||||||    
T  3695260 aaacagttttacaaatcaaacactggacaactagagttgttttgtcctgtccttca 3695205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 20255176 - 20255231
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||||||| |  ||||||||||||||| |||||| |||||||    
T  20255176 aaacagttttacaaatcaaacactggacaactagagttgttctgtcatgtccttca 20255231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 20609601 - 20609546
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    ||||||||||||||||||||||||  ||||||||||||||| |||| | |||||||    
T  20609601 aaacagttttacaaatcaaacattggacaactagagttgttctgtcctgtccttca 20609546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 24571413 - 24571468
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||||||| |  |||||||||||||||||||| | |||||||    
T  24571413 aaacagttttacaaatcaaacactggacaactagagttgttttgtcctgtccttca 24571468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 49748864 - 49748809
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||||||| ||||||||| |||||||| | || |||||||||    
T  49748864 aaacagttttacaaatcaaacactaaacaacttgagttgttctatcctatccttca 49748809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 51259733 - 51259678
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||||||| |  ||||||||||||||| |||||| |||||||    
T  51259733 aaacagttttacaaatcaaacactggacaactagagttgttctgtcatgtccttca 51259678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 8253812 - 8253860
Alignment:
Q  8 tttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||| ||||||| |||||||||||||| ||||| |||||||||    
T  8253812 tttacaaatcgaacattatacaactagagttgtcttgtcttatccttca 8253860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 2135202 - 2135257
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||||||| |  ||||||||||||||| |||| | |||||||    
T  2135202 aaacagttttacaaatcaaacactggacaactagagttgttctgtcctgtccttca 2135257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 5442411 - 5442466
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||| ||||||||||||||| |  ||||||||||||||| |||||| |||||||    
T  5442411 aaacagctttacaaatcaaacactggacaactagagttgttctgtcatgtccttca 5442466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 25860374 - 25860319
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||||||| |  ||||||||||||||| |||||  |||||||    
T  25860374 aaacagttttacaaatcaaacactggacaactagagttgttctgtcaagtccttca 25860319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 29646198 - 29646253
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||||||| | ||||||| || |||||||||| | |||||||    
T  29646198 aaacagttttacaaatcaaacactgaacaactggaattgttttgtcttgtccttca 29646253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 31882975 - 31882920
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||||||| |  |||||| |||||||| |||||| |||||||    
T  31882975 aaacagttttacaaatcaaacactggacaactggagttgttctgtcatgtccttca 31882920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 34026799 - 34026854
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||||||| | ||||| |||||||||| |||| | |||||||    
T  34026799 aaacagttttacaaatcaaacactgaacaaatagagttgttctgtcctgtccttca 34026854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 40094635 - 40094690
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||||||| |  ||||||||||||||| |||| | |||||||    
T  40094635 aaacagttttacaaatcaaacactggacaactagagttgttctgtcctgtccttca 40094690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 50386409 - 50386354
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||||||| || |||||| |||||||| |||| | |||||||    
T  50386409 aaacagttttacaaatcaaacactagacaactggagttgttctgtcctgtccttca 50386354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 4851411 - 4851366
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtc 46  Q
    |||||||||||||||||||||| |  ||||||||||||||| ||||    
T  4851411 aaacagttttacaaatcaaacactggacaactagagttgttctgtc 4851366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 21221314 - 21221269
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtc 46  Q
    |||||||||||||||||||| |||  ||||||||||||||| ||||    
T  21221314 aaacagttttacaaatcaaatattggacaactagagttgttctgtc 21221269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 29585007 - 29585052
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtc 46  Q
    |||||||||||||||||||||| |  ||||||||||||||| ||||    
T  29585007 aaacagttttacaaatcaaacactggacaactagagttgttctgtc 29585052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 5968838 - 5968783
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||||||| |  |||||||||||||||||||| |||||||||    
T  5968838 aaacagttttacaaatcaaacactggacaactagagttgttttgtcctatccttca 5968783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 27104090 - 27104130
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgtt 41  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  27104090 aaacagttttacaaatcaaacattgaacaactagagttgtt 27104130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 32019975 - 32019920
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||||||| | |||||||||||||||| |||| | |||||||    
T  32019975 aaacagttttacaaatcaaacactgaacaactagagttgttctgtcctgtccttca 32019920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 37474831 - 37474886
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||||||| |  |||||| |||||||| ||||||||||||||    
T  37474831 aaacagttttacaaatcaaacactggacaactggagttgttctgtcatatccttca 37474886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 45446586 - 45446641
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||||||| |  |||||||||||| ||||||| |||||||||    
T  45446586 aaacagttttacaaatcaaacactggacaactagagttattttgtcttatccttca 45446641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 8673029 - 8672974
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||||||| |  ||||||| |||||||||||| | |||||||    
T  8673029 aaacagttttacaaatcaaacactggacaactatagttgttttgtcctgtccttca 8672974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 10467195 - 10467250
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||||||| |  ||||||||||||||| |||| | |||||||    
T  10467195 aaacagttttacaaatcaaacactggacaactagagttgttctgtcctgtccttca 10467250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 12753299 - 12753244
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    ||||||| |||||||||||||| |  |||||||||||||||||||| | |||||||    
T  12753299 aaacagtcttacaaatcaaacactggacaactagagttgttttgtcctgtccttca 12753244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 13406909 - 13406854
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||| ||||| || ||||||||||||||| || | |||||||||    
T  13406909 aaacagttttacaaattaaacactagacaactagagttgttctgccctatccttca 13406854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 29611029 - 29610974
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    ||||||||||||||||||||||||  ||||||  ||||||| |||||| |||||||    
T  29611029 aaacagttttacaaatcaaacattggacaactgaagttgttctgtcatgtccttca 29610974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 30542996 - 30542941
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||||||| |  ||||||| ||||||| |||||| |||||||    
T  30542996 aaacagttttacaaatcaaacactggacaactaaagttgttatgtcatgtccttca 30542941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 56
Target Start/End: Original strand, 34063263 - 34063314
Alignment:
Q  5 agttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||| |  ||||||||||||||| |||||| |||||||    
T  34063263 agttttacaaatcaaacactggacaactagagttgttctgtcatgtccttca 34063314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 34101639 - 34101694
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||||||| |  ||||||||||||||| |||| | |||||||    
T  34101639 aaacagttttacaaatcaaacactggacaactagagttgttctgtcttgtccttca 34101694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 37861990 - 37862029
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgt 40  Q
    |||||||||||| ||||||||||| |||||||||||||||    
T  37861990 aaacagttttactaatcaaacattgaacaactagagttgt 37862029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 40389171 - 40389226
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||||||| |  |||||| |||||||| |||||| |||||||    
T  40389171 aaacagttttacaaatcaaacactggacaactggagttgttctgtcatgtccttca 40389226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 41709908 - 41709963
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||||||| |  ||||||||||||||| |||| | |||||||    
T  41709908 aaacagttttacaaatcaaacactggacaactagagttgttctgtcctgtccttca 41709963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 32303582 - 32303528
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttc 55  Q
    |||||||||||||||||||||| | |||||||| ||||||| | |||| ||||||    
T  32303582 aaacagttttacaaatcaaacactgaacaactaaagttgttctatcatttccttc 32303528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 3251630 - 3251577
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatcctt 54  Q
    ||||||||||| |||||||||| |  ||||||||||||||| |||| |||||||    
T  3251630 aaacagttttataaatcaaacactggacaactagagttgttctgtcttatcctt 3251577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 4052611 - 4052656
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtc 46  Q
    |||||||||||||||||||||| |  ||||||||||||||| ||||    
T  4052611 aaacagttttacaaatcaaacactggacaactagagttgttctgtc 4052656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 10531415 - 10531456
Alignment:
Q  5 agttttacaaatcaaacattaaacaactagagttgttttgtc 46  Q
    |||| |||||||||||||||  ||||||||||||||||||||    
T  10531415 agttctacaaatcaaacattgtacaactagagttgttttgtc 10531456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 22756385 - 22756340
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtc 46  Q
    ||||||||||||||||||||||||  | |||| |||||||||||||    
T  22756385 aaacagttttacaaatcaaacattgtataactggagttgttttgtc 22756340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 21785006 - 21785061
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||||||| | |||||||||||||||| |||||| |||||||    
T  21785006 aaacagttttacaaatcaaacactgaacaactagagttgttctgtcatgtccttca 21785061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 10932517 - 10932462
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||||||| | |||||||||||||||| |||| | |||||||    
T  10932517 aaacagttttacaaatcaaacactgaacaactagagttgttctgtcctgtccttca 10932462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 21133507 - 21133562
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||| |||||||||| ||||||||||||| | |||| |||||||    
T  21133507 aaacagttttacaaattaaacattaaataactagagttgttctatcatttccttca 21133562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 46633827 - 46633882
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||||||| |  ||||||||||||||| |||||| |||||||    
T  46633827 aaacagttttacaaatcaaacactggacaactagagttgttctgtcatgtccttca 46633882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 16027887 - 16027833
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttc 55  Q
    ||||| |||||||||||||||| || |||||||||||| | ||||||||||||||    
T  16027887 aaacaattttacaaatcaaacactatacaactagagttatcttgtcatatccttc 16027833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 44748830 - 44748875
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtc 46  Q
    |||||||||||||||||||||| |  ||||||||||||||||||||    
T  44748830 aaacagttttacaaatcaaacactggacaactagagttgttttgtc 44748875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 1870270 - 1870310
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgtt 41  Q
    |||||||||||||||||||||| | ||||||||||||||||    
T  1870270 aaacagttttacaaatcaaacactgaacaactagagttgtt 1870310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 11321842 - 11321798
Alignment:
Q  4 cagttttacaaatcaaacattaaacaactagagttgttttgtcat 48  Q
    |||||||||||||||||||||  ||||||||||||||| ||||||    
T  11321842 cagttttacaaatcaaacattggacaactagagttgttctgtcat 11321798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 3922663 - 3922608
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||| ||||| |  ||||||||||||||| |||||| |||||||    
T  3922663 aaacagttttacaaataaaacactggacaactagagttgttctgtcatgtccttca 3922608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 26994185 - 26994130
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||||||| |  ||||||||||||||| |||| | |||||||    
T  26994185 aaacagttttacaaatcaaacactggacaactagagttgttctgtcctgtccttca 26994130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 40753290 - 40753337
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcat 48  Q
    ||||||||||||||||||||||||  ||||| ||||||||| ||||||    
T  40753290 aaacagttttacaaatcaaacattggacaacgagagttgttctgtcat 40753337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 43158646 - 43158591
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||||||| |  ||||||||||||||| |||| | |||||||    
T  43158646 aaacagttttacaaatcaaacactggacaactagagttgttctgtcttgtccttca 43158591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 47316658 - 47316603
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    ||||| |||||||||||||||| |  |||||||||||| || ||||||||||||||    
T  47316658 aaacaattttacaaatcaaacactggacaactagagttattctgtcatatccttca 47316603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 47953325 - 47953370
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtc 46  Q
    |||||||||||||||||||||| |  ||||||||||||||| ||||    
T  47953325 aaacagttttacaaatcaaacactggacaactagagttgttctgtc 47953370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 18470817 - 18470857
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgtt 41  Q
    |||||||||||||||||||||| |  |||||||||||||||    
T  18470817 aaacagttttacaaatcaaacactcgacaactagagttgtt 18470857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 36769529 - 36769489
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgtt 41  Q
    |||||||||||||||||||||| |  |||||||||||||||    
T  36769529 aaacagttttacaaatcaaacactggacaactagagttgtt 36769489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 43189202 - 43189150
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatcct 53  Q
    ||||| ||||| |||||||||| |  |||||||||||||||||||||| ||||    
T  43189202 aaacatttttataaatcaaacactggacaactagagttgttttgtcatgtcct 43189150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 36497351 - 36497406
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||||||| |  |||||||||||||||||||| |||||||||    
T  36497351 aaacagttttacaaatcaaacactggacaactagagttgttttgtcctatccttca 36497406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 36743640 - 36743585
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||| ||||||| | |||||||||||||||||||| ||||||||||    
T  36743640 aaacagttttacaattcaaacactgaacaactagagttgttttgttatatccttca 36743585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 4325925 - 4325970
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtc 46  Q
    |||||||||||||||||||||| | |||||||||||||||||||||    
T  4325925 aaacagttttacaaatcaaacactgaacaactagagttgttttgtc 4325970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 33552794 - 33552749
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtc 46  Q
    |||||||||||||||||||||| | |||||||||||||||||||||    
T  33552794 aaacagttttacaaatcaaacactgaacaactagagttgttttgtc 33552749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 1231445 - 1231500
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||||||| |  ||||||||||||||| |||| |||||||||    
T  1231445 aaacagttttacaaatcaaacactggacaactagagttgttctgtcctatccttca 1231500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 2787098 - 2787153
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    ||||| |||||||||||||||| || ||||||||||||||| |||||| |||||||    
T  2787098 aaacaattttacaaatcaaacactagacaactagagttgttatgtcatgtccttca 2787153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 20517974 - 20517919
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||||||| | |||||||||||||||| |||| | |||||||    
T  20517974 aaacagttttacaaatcaaacactgaacaactagagttgttctgtcctgtccttca 20517919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 23522014 - 23522069
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||||||| |  |||||||||||||||||||| | |||||||    
T  23522014 aaacagttttacaaatcaaacactggacaactagagttgttttgtcctgtccttca 23522069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 29785489 - 29785434
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||||||| |  ||||||||||||||| |||||| |||||||    
T  29785489 aaacagttttacaaatcaaacactggacaactagagttgttctgtcatgtccttca 29785434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 38486209 - 38486154
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||||||| |  ||||||||||||||| |||||| |||||||    
T  38486209 aaacagttttacaaatcaaacactggacaactagagttgttctgtcatgtccttca 38486154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 44324294 - 44324239
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||||||| | ||||||| |||||||| |||||| |||||||    
T  44324294 aaacagttttacaaatcaaacactgaacaactggagttgttctgtcatgtccttca 44324239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 50727865 - 50727810
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||||||| |  ||||||||||||||| |||||| |||||||    
T  50727865 aaacagttttacaaatcaaacacttgacaactagagttgttctgtcatgtccttca 50727810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 50735879 - 50735824
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||||||| |  ||||||||||||||| |||||| |||||||    
T  50735879 aaacagttttacaaatcaaacacttgacaactagagttgttctgtcatgtccttca 50735824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 9512292 - 9512238
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttc 55  Q
    |||||||||||||||||||||| | |||||||||||||||| | |||| ||||||    
T  9512292 aaacagttttacaaatcaaacactgaacaactagagttgttctatcatgtccttc 9512238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 36886066 - 36886111
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtc 46  Q
    |||||||||||||||||||||| |  ||||||||||||||||||||    
T  36886066 aaacagttttacaaatcaaacactggacaactagagttgttttgtc 36886111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 55065284 - 55065231
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatcctt 54  Q
    |||||||||||||||||||||| | || ||||||||||||| |||||| |||||    
T  55065284 aaacagttttacaaatcaaacactgaataactagagttgttctgtcatgtcctt 55065231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 52319457 - 52319497
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgtt 41  Q
    ||||||||||||||||||||||||  |||||||||||||||    
T  52319457 aaacagttttacaaatcaaacattggacaactagagttgtt 52319497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 2629903 - 2629848
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    ||||||||||||||||||||||    ||||||||||||||| |||||| |||||||    
T  2629903 aaacagttttacaaatcaaacacgggacaactagagttgttatgtcatgtccttca 2629848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 3649770 - 3649825
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||||||| || |||||| |||||||| |||| | |||||||    
T  3649770 aaacagttttacaaatcaaacactagacaactggagttgttctgtcttgtccttca 3649825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 12601020 - 12601075
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||| ||||||||||||||||| |  ||||||||||||||| |||||| |||||||    
T  12601020 aaactgttttacaaatcaaacactggacaactagagttgttctgtcatgtccttca 12601075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 23328030 - 23328085
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||| |||||||    ||||||||||||||| ||||||||||||||    
T  23328030 aaacagttttacaagtcaaacacatgacaactagagttgttctgtcatatccttca 23328085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 29616300 - 29616355
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||||||| |  ||||||||||||||| | |||| |||||||    
T  29616300 aaacagttttacaaatcaaacactggacaactagagttgttctatcatgtccttca 29616355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 37865887 - 37865942
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||||||| |  ||||||||||||||| |||| | |||||||    
T  37865887 aaacagttttacaaatcaaacactggacaactagagttgttatgtcgtgtccttca 37865942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 39078795 - 39078850
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||||||| |  |||||| |||||||| |||||| |||||||    
T  39078795 aaacagttttacaaatcaaacactggacaactggagttgttctgtcatgtccttca 39078850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 42870105 - 42870160
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    ||||||||||||||||||||||    ||||||||||||||| |||||| |||||||    
T  42870105 aaacagttttacaaatcaaacaccggacaactagagttgttatgtcatgtccttca 42870160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 46680462 - 46680407
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||||||| | |||||||||| ||||| |||| | |||||||    
T  46680462 aaacagttttacaaatcaaacactgaacaactagaattgttctgtcctgtccttca 46680407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 47642443 - 47642388
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||||||| | ||||||| |||||||| |||| | |||||||    
T  47642443 aaacagttttacaaatcaaacactgaacaactggagttgttctgtcctgtccttca 47642388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 52949854 - 52949909
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||| ||||| |  |||||||||||||||||||| | |||||||    
T  52949854 aaacagttttacaaatgaaacactggacaactagagttgttttgtcgtgtccttca 52949909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 54543127 - 54543170
Alignment:
Q  5 agttttacaaatcaaacattaaacaactagagttgttttgtcat 48  Q
    |||||||||||||||||| | |||||||||||||||| ||||||    
T  54543127 agttttacaaatcaaacactgaacaactagagttgttctgtcat 54543170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 21202873 - 21202918
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtc 46  Q
    |||||||||||||||||||||| |  ||||||||||||||| ||||    
T  21202873 aaacagttttacaaatcaaacactggacaactagagttgttctgtc 21202918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 33176984 - 33176931
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatcctt 54  Q
    |||||||||||||||||||||| |  ||||||| | ||||| ||||||||||||    
T  33176984 aaacagttttacaaatcaaacactggacaactaaaattgttctgtcatatcctt 33176931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 38812654 - 38812699
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtc 46  Q
    |||||||||||||||||||||| |  ||||||||||||||| ||||    
T  38812654 aaacagttttacaaatcaaacactggacaactagagttgttatgtc 38812699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 28115385 - 28115425
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgtt 41  Q
    |||||||||||||||||||||| || |||||| ||||||||    
T  28115385 aaacagttttacaaatcaaacactagacaacttgagttgtt 28115425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 50186662 - 50186702
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgtt 41  Q
    ||||| |||||||||||||||| | ||||||||||||||||    
T  50186662 aaacaattttacaaatcaaacactgaacaactagagttgtt 50186702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0957 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0957
Description:

Target: scaffold0957; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 2461 - 2406
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||||||| | |||||||||||||||| |||| | |||||||    
T  2461 aaacagttttacaaatcaaacactgaacaactagagttgttatgtcttgtccttca 2406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 372929 - 372874
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    ||||||||||||||||||||||||  ||||||| | ||||| ||||||||||||||    
T  372929 aaacagttttacaaatcaaacatttgacaactaaaattgttctgtcatatccttca 372874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 7259028 - 7259083
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||||||| || ||| ||||||||||| |||||| |||||||    
T  7259028 aaacagttttacaaatcaaacactagacagctagagttgttctgtcatgtccttca 7259083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 9717332 - 9717387
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||||||| | |||||||||||||||| |||| | |||||||    
T  9717332 aaacagttttacaaatcaaacactgaacaactagagttgttctgtcctgtccttca 9717387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 18793252 - 18793197
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||||||| | | |||||||||||||| |||||| |||||||    
T  18793252 aaacagttttacaaatcaaacactgagcaactagagttgttctgtcatgtccttca 18793197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 37863325 - 37863270
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||||||| |  ||||||||||||||| |||||| |||||||    
T  37863325 aaacagttttacaaatcaaacactggacaactagagttgttctgtcatgtccttca 37863270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 42365708 - 42365763
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||| ||||||||||||||||| || ||||||||||||||| |||||| |||||||    
T  42365708 aaacggttttacaaatcaaacactagacaactagagttgttatgtcatgtccttca 42365763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 3913419 - 3913366
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatcctt 54  Q
    |||||||||||||||||||||| |  ||||||||| |||||||||||| |||||    
T  3913419 aaacagttttacaaatcaaacactggacaactagaattgttttgtcatgtcctt 3913366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 5278793 - 5278740
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatcctt 54  Q
    ||||||||||||||||||||||   ||||| |||||||||| ||||||||||||    
T  5278793 aaacagttttacaaatcaaacacctaacaattagagttgttctgtcatatcctt 5278740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 4641645 - 4641700
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||||||| | |||||||| ||||||| |||| | |||||||    
T  4641645 aaacagttttacaaatcaaacactgaacaactaaagttgttctgtcttttccttca 4641700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 7761532 - 7761477
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||||||| |  ||||||||||||||| |||| | |||||||    
T  7761532 aaacagttttacaaatcaaacactggacaactagagttgttctgtcctgtccttca 7761477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 9732889 - 9732834
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||||||| |  ||||||||||||||| |||| | |||||||    
T  9732889 aaacagttttacaaatcaaacactggacaactagagttgttctgtcctgtccttca 9732834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 16177842 - 16177787
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||||||| |  |||| | |||||||| ||||||||||||||    
T  16177842 aaacagttttacaaatcaaacactggacaattggagttgttatgtcatatccttca 16177787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 18685967 - 18686022
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||||||| |  |||||||||||| || |||||| |||||||    
T  18685967 aaacagttttacaaatcaaacactggacaactagagttattctgtcatgtccttca 18686022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 19513648 - 19513593
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    ||||||||||||||||||||||||  | ||||||||||||| |||| | |||||||    
T  19513648 aaacagttttacaaatcaaacattggaaaactagagttgttctgtcctgtccttca 19513593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 33366741 - 33366796
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||||||| |  |||| |||| ||||| ||||||||||||||    
T  33366741 aaacagttttacaaatcaaacactggacaattagaattgttctgtcatatccttca 33366796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 33889374 - 33889429
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    ||||| |||||||||||||||| || ||||||||||||||| |||| | |||||||    
T  33889374 aaacaattttacaaatcaaacactagacaactagagttgttctgtcctgtccttca 33889429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 34338941 - 34338996
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||||||| |  ||||||||||||||| |||| | |||||||    
T  34338941 aaacagttttacaaatcaaacactggacaactagagttgttctgtcctgtccttca 34338996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 35114916 - 35114955
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgt 40  Q
    |||||||||||||||||||||| || ||||||||||||||    
T  35114916 aaacagttttacaaatcaaacactagacaactagagttgt 35114955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 37308786 - 37308841
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||||||| |  ||||||||||||||| |||| | |||||||    
T  37308786 aaacagttttacaaatcaaacactggacaactagagttgttctgtcctgtccttca 37308841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 44284760 - 44284815
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||||||| | |||||||  ||||||| |||||| |||||||    
T  44284760 aaacagttttacaaatcaaacactgaacaactctagttgttctgtcatgtccttca 44284815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 16104405 - 16104459
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttc 55  Q
    |||||||||||||||||||||| |  ||||||| ||||||| |||| ||||||||    
T  16104405 aaacagttttacaaatcaaacactggacaactatagttgttctgtcctatccttc 16104459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 30798447 - 30798402
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtc 46  Q
    |||||||||||||||||||||| |  ||||||||||||||| ||||    
T  30798447 aaacagttttacaaatcaaacactggacaactagagttgttctgtc 30798402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 2645046 - 2645006
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgtt 41  Q
    |||||||||||||||||||||| |  |||||||||||||||    
T  2645046 aaacagttttacaaatcaaacactggacaactagagttgtt 2645006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 32498046 - 32498086
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgtt 41  Q
    |||||||||||||||||||||| |  |||||||||||||||    
T  32498046 aaacagttttacaaatcaaacactggacaactagagttgtt 32498086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 16451267 - 16451322
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    ||||||||||||||||||||||||  ||||||||||||||| |||| | |||||||    
T  16451267 aaacagttttacaaatcaaacattggacaactagagttgttatgtcctgtccttca 16451322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 26118249 - 26118194
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||||||| |  ||||||||||||||| |||||| |||||||    
T  26118249 aaacagttttacaaatcaaacactggacaactagagttgttatgtcatgtccttca 26118194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 35387345 - 35387290
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||||||| |  ||||||||||||||| |||||| |||||||    
T  35387345 aaacagttttacaaatcaaacactggacaactagagttgttctgtcatgtccttca 35387290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 16437502 - 16437542
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgtt 41  Q
    ||||||||||||||||||||||||  |||||||||||||||    
T  16437502 aaacagttttacaaatcaaacattggacaactagagttgtt 16437542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 844758 - 844703
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||||||| |  ||||||||||||||| |||| | |||||||    
T  844758 aaacagttttacaaatcaaacactggacaactagagttgttctgtcctgtccttca 844703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 1351469 - 1351414
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||||||| |  ||||||||||||||| |||| | |||||||    
T  1351469 aaacagttttacaaatcaaacactggacaactagagttgttctgtcctgtccttca 1351414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 3414883 - 3414832
Alignment:
Q  5 agttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||| |  | || |||||||||||||||||||||||||    
T  3414883 agttttacaaatcaaacactggataattagagttgttttgtcatatccttca 3414832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 6711080 - 6711025
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||||||| |  ||||||||||||||| |||| | |||||||    
T  6711080 aaacagttttacaaatcaaacactggacaactagagttgttctgtcctgtccttca 6711025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 7837273 - 7837328
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||||||| | |||||||  ||||||| | ||||||||||||    
T  7837273 aaacagttttacaaatcaaacactgaacaactgaagttgttctatcatatccttca 7837328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 16386994 - 16387049
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||||||| | ||||||||||  |||| |||||| |||||||    
T  16386994 aaacagttttacaaatcaaacactgaacaactagaactgttctgtcatgtccttca 16387049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 17327683 - 17327628
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||| ||||| |  |||||||||||||||||||| | |||||||    
T  17327683 aaacagttttacaaattaaacactggacaactagagttgttttgtcttgtccttca 17327628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 17888088 - 17888135
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcat 48  Q
    ||||||||||||||||||||||    ||||||||||||||||||||||    
T  17888088 aaacagttttacaaatcaaacaccggacaactagagttgttttgtcat 17888135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 32270493 - 32270548
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||||||| |  ||||||||||||||| |||| | |||||||    
T  32270493 aaacagttttacaaatcaaacactggacaactagagttgttctgtcctgtccttca 32270548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 32289378 - 32289323
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||||||| |  ||||||||||||||| |||| | |||||||    
T  32289378 aaacagttttacaaatcaaacactggacaactagagttgttctgtcttgtccttca 32289323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 45658961 - 45659016
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||| ||| || |||||| ||||||||||||| | |||||||    
T  45658961 aaacagttttacaaatcagacactagacaactggagttgttttgtcctgtccttca 45659016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 12890378 - 12890428
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatc 51  Q
    |||||||||||||||||||||| |  ||||||||||||||| |||| ||||    
T  12890378 aaacagttttacaaatcaaacactggacaactagagttgttctgtcctatc 12890428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 5109868 - 5109913
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtc 46  Q
    |||||||||||||||||||||| | ||||||| |||||||| ||||    
T  5109868 aaacagttttacaaatcaaacactgaacaactggagttgttctgtc 5109913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 24339672 - 24339627
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtc 46  Q
    |||||||| ||||||||||||| | |||||||||||||||| ||||    
T  24339672 aaacagttatacaaatcaaacactgaacaactagagttgttctgtc 24339627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 46155053 - 46155102
Alignment:
Q  7 ttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||| | ||||| |||||||||| |||||| |||||||    
T  46155053 ttttacaaatcaaacactgaacaattagagttgttctgtcatgtccttca 46155102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 49303388 - 49303343
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtc 46  Q
    |||||||||||||||||||||| |  |||| |||||||||||||||    
T  49303388 aaacagttttacaaatcaaacactggacaattagagttgttttgtc 49303343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 28340337 - 28340297
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgtt 41  Q
    |||||||||||||||||||||| |  |||||||||||||||    
T  28340337 aaacagttttacaaatcaaacactggacaactagagttgtt 28340297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 30105714 - 30105674
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgtt 41  Q
    |||||||||||||||||||||| |  |||||||||||||||    
T  30105714 aaacagttttacaaatcaaacactggacaactagagttgtt 30105674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 41973051 - 41973091
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgtt 41  Q
    |||||||||||||||||||||| |  |||||||||||||||    
T  41973051 aaacagttttacaaatcaaacactggacaactagagttgtt 41973091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 50382434 - 50382390
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgt 45  Q
    ||||||||||| |||||||||| ||||||  ||||||||||||||    
T  50382434 aaacagttttaaaaatcaaacactaaacatgtagagttgttttgt 50382390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 50540484 - 50540528
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgt 45  Q
    |||||||||||||||||||||| |  |||||||||| ||||||||    
T  50540484 aaacagttttacaaatcaaacactggacaactagagctgttttgt 50540528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 15338 - 15298
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgtt 41  Q
    |||||||||||||||||||||| | ||||||||||||||||    
T  15338 aaacagttttacaaatcaaacactgaacaactagagttgtt 15298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 15303 - 15358
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||||||| |  |||| ||||||||||||||| | |||||||    
T  15303 aaacagttttacaaatcaaacactggacaattagagttgttttgtcttgtccttca 15358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 102080 - 102135
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtcatatccttca 56  Q
    |||||||||||||||||||||| |  | ||||||||||||| |||||| |||||||    
T  102080 aaacagttttacaaatcaaacactggataactagagttgttctgtcatgtccttca 102135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 23706 - 23751
Alignment:
Q  1 aaacagttttacaaatcaaacattaaacaactagagttgttttgtc 46  Q
    |||||||||||||||||||||| |  ||||||||||||||| ||||    
T  23706 aaacagttttacaaatcaaacactggacaactagagttgttctgtc 23751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University