View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18285_low_11 (Length: 375)
Name: NF18285_low_11
Description: NF18285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18285_low_11 |
 | |
|
| [»] chr1 (17 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 17)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 27 - 375
Target Start/End: Original strand, 13204212 - 13204560
Alignment:
| Q |
27 |
ataacaaatgggaatagaagacaacatgcatcaccgatcgctagaagagagttcattcaaatgcatcttttagtgactttaacctttaaaccatgtttca |
126 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
13204212 |
ataacaaatgggaataggagacaacatccatcaccgatcgctagaagagagttcattcaaatgcatcttttagtgactttaacctttaaaccatatttca |
13204311 |
T |
|
| Q |
127 |
tgtgaagaacaaaagaaagctttggggttacagggtaaccttccaccacctttatgtgaaactttggtaacaaagctgctgcaaccatcttcatttgaat |
226 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| ||||||||| | |||||||||||| || |||||||||| ||||| ||||||||||||||||| |
|
|
| T |
13204312 |
tgtgaagaacaaaagaaatctttggggttacagggtgaccttccactatctttatgtgaaaattctgtaacaaagcagctgcgaccatcttcatttgaat |
13204411 |
T |
|
| Q |
227 |
caagctaatatccttacccatacaacttctaggacctgtattgaaagctatgaacttgtatgatggtacatgaataatgtttcctccttctgatatccat |
326 |
Q |
| |
|
|| |||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||| ||||||| |||| |
|
|
| T |
13204412 |
gaaactaagatctttacccaaacaacttctaggacctgtattgaaagctatgaacttgtaagatggtacatgtataatgtgtcctgtctctgatacccat |
13204511 |
T |
|
| Q |
327 |
ctctcaggcttaaattccatgaagtcttctccccatatttgttccatcc |
375 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
13204512 |
ctctcaggcttaaattccatgcagtcttctccccatatttgttccatcc |
13204560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 56 - 375
Target Start/End: Original strand, 13006982 - 13007301
Alignment:
| Q |
56 |
atcaccgatcgctagaagagagttcattcaaatgcatcttttagtgactttaacctttaaaccatgtttcatgtgaagaacaaaagaaagctttggggtt |
155 |
Q |
| |
|
|||||||||| || ||||||| |||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
13006982 |
atcaccgatctctcgaagagacttcagtcaaatgcatcttttagtgactttaaccttcaagccatgtttcatgtgaagaacaaaagaaagcttcggggtt |
13007081 |
T |
|
| Q |
156 |
acagggtaaccttccaccacctttatgtgaaactttggtaacaaagctgctgcaaccatcttcatttgaatcaagctaatatccttacccatacaacttc |
255 |
Q |
| |
|
| ||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
13007082 |
atagggtgacctgccaccacctttatgtgaaactttggtaacaaagctgctgcgaccatcttcatttgaatgaagctaatatccttgcccatacaacttc |
13007181 |
T |
|
| Q |
256 |
taggacctgtattgaaagctatgaacttgtatgatggtacatgaataatgtttcctccttctgatatccatctctcaggcttaaattccatgaagtcttc |
355 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||| ||||| | ||||||||||||||||||||||||| ||||||| |
|
|
| T |
13007182 |
taggacctgtattgaaagctatgaacttgtaagatggtacatgtataatgtgtcctctctctgacacccatctctcaggcttaaattccatgcagtcttc |
13007281 |
T |
|
| Q |
356 |
tccccatatttgttccatcc |
375 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
13007282 |
tccccatatttgttccatcc |
13007301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 85 - 375
Target Start/End: Original strand, 13100812 - 13101101
Alignment:
| Q |
85 |
aaatgcatcttttagtgactttaacctttaaaccatgtttcatgtgaagaacaaaagaaagctttggggttacagggtaaccttccaccacctttatgtg |
184 |
Q |
| |
|
|||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||| |||||| |
|
|
| T |
13100812 |
aaatgcatcttttagtgactttgaccttcaagccatgtttcatgtgaagaacaaaagaaagcttcggggttatagggtgaccttccaccacctgtatgtg |
13100911 |
T |
|
| Q |
185 |
aaactttggtaacaaagctgctgcaaccatcttcatttgaatcaagctaatatccttacccatacaacttctaggacctgtattgaaagctatgaacttg |
284 |
Q |
| |
|
|||||| ||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
13100912 |
aaacttcggtaacaaagcagctgcgaccatcttcatttgaatgaagctaatatccttacccatacaacttctaggtcctg-attgaaagctatgaacttg |
13101010 |
T |
|
| Q |
285 |
tatgatggtacatgaataatgtttcctccttctgatatccatctctcaggcttaaattccatgaagtcttctccccatatttgttccatcc |
375 |
Q |
| |
|
|| ||||||||||| ||||||| ||||| ||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
13101011 |
taagatggtacatgtataatgtgtcctctctctgacacccatctctcaggcttaaattccatgcagtcttctccccatatttgttccatcc |
13101101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 63 - 375
Target Start/End: Complemental strand, 13070579 - 13070267
Alignment:
| Q |
63 |
atcgctagaagagagttcattcaaatgcatcttttagtgactttaacctttaaaccatgtttcatgtgaagaacaaaagaaagctttggggttacagggt |
162 |
Q |
| |
|
|||||| | ||||| |||| |||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
13070579 |
atcgctcggagagacttcagtcaaatgcatcttttagtgactttaaccttgaagccatgtttcatgtgaagaacaaatgaaagctttggggttacagggt |
13070480 |
T |
|
| Q |
163 |
aaccttccaccacctttatgtgaaactttggtaacaaagctgctgcaaccatcttcatttgaatcaagctaatatccttacccatacaacttctaggacc |
262 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||||| ||||| ||||||||||||||||| || |||| ||| ||||||| ||||||||| ||||| |
|
|
| T |
13070479 |
gaccttccaccacctgtatgtgaaacttctgtaacaaagcagctgcgaccatcttcatttgaatgaaactaagatctttacccaaacaacttctcggacc |
13070380 |
T |
|
| Q |
263 |
tgtattgaaagctatgaacttgtatgatggtacatgaataatgtttcctccttctgatatccatctctcaggcttaaattccatgaagtcttctccccat |
362 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||| ||||||| |||| ||||||| ||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
13070379 |
tgtattgaaagctatgaacttgtaagatggaacatgtataatgtgtcctgtctctgatacccatctctcaggcttaaattccatgcagtcttctccccat |
13070280 |
T |
|
| Q |
363 |
atttgttccatcc |
375 |
Q |
| |
|
||||||||||||| |
|
|
| T |
13070279 |
atttgttccatcc |
13070267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 72 - 375
Target Start/End: Original strand, 13094197 - 13094500
Alignment:
| Q |
72 |
agagagttcattcaaatgcatcttttagtgactttaacctttaaaccatgtttcatgtgaagaacaaaagaaagctttggggttacagggtaaccttcca |
171 |
Q |
| |
|
||||| |||| |||||||| |||||||| ||||| |||||| || |||||||||||| |||||| | ||||||| ||||||||||||||| |||||||| |
|
|
| T |
13094197 |
agagacttcagtcaaatgcttcttttagagacttcaaccttcaagccatgtttcatgcgaagaaacacagaaagccttggggttacagggtgaccttcca |
13094296 |
T |
|
| Q |
172 |
ccacctttatgtgaaactttggtaacaaagctgctgcaaccatcttcatttgaatcaagctaatatccttacccatacaacttctaggacctgtattgaa |
271 |
Q |
| |
|
|||||| |||||||||||| |||||||||| ||||| ||||||||||||||||| || |||||||| ||||| |||||| |||| || ||||| ||||| |
|
|
| T |
13094297 |
ccacctgtatgtgaaacttccgtaacaaagcagctgcgaccatcttcatttgaatgaaactaatatctttacctatacaaattctgggtcctgtgttgaa |
13094396 |
T |
|
| Q |
272 |
agctatgaacttgtatgatggtacatgaataatgtttcctccttctgatatccatctctcaggcttaaattccatgaagtcttctccccatatttgttcc |
371 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||| | ||| | || |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
13094397 |
agctatgaacttgtaagatggtacatgtataatatctcccctctcagatatccatctctcaggcttaaattccatgcagtcttctccccatatttgttcc |
13094496 |
T |
|
| Q |
372 |
atcc |
375 |
Q |
| |
|
|||| |
|
|
| T |
13094497 |
atcc |
13094500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 83 - 375
Target Start/End: Original strand, 13129637 - 13129929
Alignment:
| Q |
83 |
tcaaatgcatcttttagtgactttaacctttaaaccatgtttcatgtgaagaacaaaagaaagctttggggttacagggtaaccttccaccacctttatg |
182 |
Q |
| |
|
|||||||| |||||||| ||||| |||||| || |||||||||||| |||||| | ||||||| ||||||||||||||| |||||||||||||| |||| |
|
|
| T |
13129637 |
tcaaatgcttcttttagagacttcaaccttcaagccatgtttcatgcgaagaagcacagaaagccttggggttacagggtgaccttccaccacctgtatg |
13129736 |
T |
|
| Q |
183 |
tgaaactttggtaacaaagctgctgcaaccatcttcatttgaatcaagctaatatccttacccatacaacttctaggacctgtattgaaagctatgaact |
282 |
Q |
| |
|
|||||||| |||||||||| ||||| ||||||||||||||||| || |||| ||| ||||| |||||| |||| || ||||| |||||||||| ||||| |
|
|
| T |
13129737 |
tgaaacttctgtaacaaagcagctgcgaccatcttcatttgaatgaaactaagatctttacctatacaaattctgggtcctgtgttgaaagctacgaact |
13129836 |
T |
|
| Q |
283 |
tgtatgatggtacatgaataatgtttcctccttctgatatccatctctcaggcttaaattccatgaagtcttctccccatatttgttccatcc |
375 |
Q |
| |
|
|||| ||||||||||| ||||| | ||| | || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
13129837 |
tgtaagatggtacatgtataatatctcccctctcagatatccatctctcaggcttaaattccatgcagtcttctccccatatttgttccatcc |
13129929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 83 - 375
Target Start/End: Complemental strand, 30368491 - 30368199
Alignment:
| Q |
83 |
tcaaatgcatcttttagtgactttaacctttaaaccatgtttcatgtgaagaacaaaagaaagctttggggttacagggtaaccttccaccacctttatg |
182 |
Q |
| |
|
|||||||||||||||||| || || || || || ||||||||||| ||| |||| |||| | | ||||||||||||| ||||||||| |||| |||| |
|
|
| T |
30368491 |
tcaaatgcatcttttagtaaccttgacgttcaagccatgtttcattcaaaggacaacagaagccctaggggttacagggtgaccttccacgacctgtatg |
30368392 |
T |
|
| Q |
183 |
tgaaactttggtaacaaagctgctgcaaccatcttcatttgaatcaagctaatatccttacccatacaacttctaggacctgtattgaaagctatgaact |
282 |
Q |
| |
|
|||||||| |||||| || |||||||||||||||||||||| || |||| ||| |||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
30368391 |
tgaaacttccataacaaggcagctgcaaccatcttcatttgaacgaaactaagatctttacccatacaacttctaggtcctgtattgaaagctatgaact |
30368292 |
T |
|
| Q |
283 |
tgtatgatggtacatgaataatgtttcctccttctgatatccatctctcaggcttaaattccatgaagtcttctccccatatttgttccatcc |
375 |
Q |
| |
|
|||| ||||||||||| ||||||| ||||| ||||||| ||||||||||||||||||||||||| | |||||||||||||||| |||||||| |
|
|
| T |
30368291 |
tgtaagatggtacatgtataatgtgtcctctctctgatacccatctctcaggcttaaattccatgcaatcttctccccatattttttccatcc |
30368199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 72 - 375
Target Start/End: Original strand, 13161319 - 13161622
Alignment:
| Q |
72 |
agagagttcattcaaatgcatcttttagtgactttaacctttaaaccatgtttcatgtgaagaacaaaagaaagctttggggttacagggtaaccttcca |
171 |
Q |
| |
|
||||| |||| |||||||| |||||||| ||||| |||||| || |||||||||||| |||||| | ||||||| ||||||||||| ||| |||||||| |
|
|
| T |
13161319 |
agagacttcagtcaaatgcttcttttagagacttcaaccttcaagccatgtttcatgcgaagaaacacagaaagccttggggttacaaggtgaccttcca |
13161418 |
T |
|
| Q |
172 |
ccacctttatgtgaaactttggtaacaaagctgctgcaaccatcttcatttgaatcaagctaatatccttacccatacaacttctaggacctgtattgaa |
271 |
Q |
| |
|
|||||| |||||||||||| |||||||||| ||||| ||||||||||||||||| || |||| ||| ||||| |||||| |||| || ||||| ||||| |
|
|
| T |
13161419 |
ccacctgtatgtgaaacttccgtaacaaagcagctgcgaccatcttcatttgaatgaaactaagatctttacctatacaaattctgggtcctgtgttgaa |
13161518 |
T |
|
| Q |
272 |
agctatgaacttgtatgatggtacatgaataatgtttcctccttctgatatccatctctcaggcttaaattccatgaagtcttctccccatatttgttcc |
371 |
Q |
| |
|
|| |||||||||||| || |||||||| ||||| | ||| | || |||||||||||||||||||||||||||||| ||||||| ||||||| ||||||| |
|
|
| T |
13161519 |
agatatgaacttgtaagaaggtacatgtataatatctcccctctcagatatccatctctcaggcttaaattccatgcagtcttccccccatagttgttcc |
13161618 |
T |
|
| Q |
372 |
atcc |
375 |
Q |
| |
|
|||| |
|
|
| T |
13161619 |
atcc |
13161622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 83 - 375
Target Start/End: Complemental strand, 13244904 - 13244612
Alignment:
| Q |
83 |
tcaaatgcatcttttagtgactttaacctttaaaccatgtttcatgtgaagaacaaaagaaagctttggggttacagggtaaccttccaccacctttatg |
182 |
Q |
| |
|
|||||||||||||||| |||||| |||||||| || ||||||||| ||| |||| |||| | | |||||||||| |||||||||||||| |||| |
|
|
| T |
13244904 |
tcaaatgcatcttttactgacttcgacctttaagccgtgtttcatgcgaacgacaatagaagttctcagcgttacagggtgaccttccaccacctgtatg |
13244805 |
T |
|
| Q |
183 |
tgaaactttggtaacaaagctgctgcaaccatcttcatttgaatcaagctaatatccttacccatacaacttctaggacctgtattgaaagctatgaact |
282 |
Q |
| |
|
||||||| |||||||| ||||||||||| |||||||||| ||||||| ||| || || ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
13244804 |
cgaaacttccataacaaagaagctgcaaccattttcatttgaacgaagctaagatctttcccaatacaacttctaggacctgcattgaaagctatgaact |
13244705 |
T |
|
| Q |
283 |
tgtatgatggtacatgaataatgtttcctccttctgatatccatctctcaggcttaaattccatgaagtcttctccccatatttgttccatcc |
375 |
Q |
| |
|
|||| || ||||||| ||||| ||||| ||||||||||||| |||||||||||||||| | | || |||||||||||||||| ||||| |
|
|
| T |
13244704 |
tgtaagacggtacatttataatccctcctctagctgatatccatctttcaggcttaaattccaagcaatcatctccccatatttgttgcatcc |
13244612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 83 - 375
Target Start/End: Complemental strand, 12964258 - 12963966
Alignment:
| Q |
83 |
tcaaatgcatcttttagtgactttaacctttaaaccatgtttcatgtgaagaacaaaagaaagctttggggttacagggtaaccttccaccacctttatg |
182 |
Q |
| |
|
|||||||||||||| | ||||||| ||||| |||||||||||||| ||||||| | || || | |||| || ||| || |||||||||||| | |||| |
|
|
| T |
12964258 |
tcaaatgcatctttgactgactttgaccttcaaaccatgtttcatacgaagaaccatagcaacccttggagtaacaaagtgaccttccaccacttctatg |
12964159 |
T |
|
| Q |
183 |
tgaaactttggtaacaaagctgctgcaaccatcttcatttgaatcaagctaatatccttacccatacaacttctaggacctgtattgaaagctatgaact |
282 |
Q |
| |
|
|||||||| |||| | || |||||||| |||||||||| ||||||||||| || || ||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
12964158 |
tgaaacttccacaacacattagcagcaaccattttcatttgaacaaagctaatatctttcccaatacaacttctaggacctgcattgaatgctatgaact |
12964059 |
T |
|
| Q |
283 |
tgtatgatggtacatgaataatgtttcctccttctgatatccatctctcaggcttaaattccatgaagtcttctccccatatttgttccatcc |
375 |
Q |
| |
|
| || ||||| || || ||||| | ||||| | |||||||||||| |||||||||||||||| | | ||||||||||||||||||||||||| |
|
|
| T |
12964058 |
tataagatggcacttgtataatttctcctctatttgatatccatctttcaggcttaaattccaagcaatcttctccccatatttgttccatcc |
12963966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 83 - 375
Target Start/End: Complemental strand, 13065596 - 13065304
Alignment:
| Q |
83 |
tcaaatgcatcttttagtgactttaacctttaaaccatgtttcatgtgaagaacaaaagaaagctttggggttacagggtaaccttccaccacctttatg |
182 |
Q |
| |
|
|||||||||||||||||||||| | ||||| || ||||||||||| || || ||||||| |||| |||||||| | ||| ||||| | | |||| |
|
|
| T |
13065596 |
tcaaatgcatcttttagtgactatgaccttcaagccatgtttcattccgagggtaatagaaagccttggagttacaggatgaccatccactaaatgtatg |
13065497 |
T |
|
| Q |
183 |
tgaaactttggtaacaaagctgctgcaaccatcttcatttgaatcaagctaatatccttacccatacaacttctaggacctgtattgaaagctatgaact |
282 |
Q |
| |
|
|||||| || | ||| || ||| |||||||||||| || ||| | ||||| ||||||| ||||||||| || |||| ||||||||||||||||| |
|
|
| T |
13065496 |
caaaacttccatagtatagccgcggcagccatcttcatttcaacgaaggtgatatctttacccaaacaacttcttggccctgcattgaaagctatgaact |
13065397 |
T |
|
| Q |
283 |
tgtatgatggtacatgaataatgtttcctccttctgatatccatctctcaggcttaaattccatgaagtcttctccccatatttgttccatcc |
375 |
Q |
| |
|
|||| || |||||||| ||||| | ||| | || ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
13065396 |
tgtaagacggtacatgtataatttgtccgctttttgatatccatctctcaggcttaaattccatgcagtcttctccccatattttctccatcc |
13065304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 164 - 345
Target Start/End: Original strand, 13271476 - 13271657
Alignment:
| Q |
164 |
accttccaccacctttatgtgaaactttggtaacaaagctgctgcaaccatcttcatttgaatcaagctaatatccttacccatacaacttctaggacct |
263 |
Q |
| |
|
|||||||||||| | |||||||||||| ||| | || ||||||||||| ||||||||||| ||||||||||| || || | ||| |||||||||||| |
|
|
| T |
13271476 |
accttccaccacatgtatgtgaaacttccataatacagaagctgcaaccattttcatttgaataaagctaatatctttcccaagacagcttctaggacct |
13271575 |
T |
|
| Q |
264 |
gtattgaaagctatgaacttgtatgatggtacatgaataatgtttcctccttctgatatccatctctcaggcttaaattcca |
345 |
Q |
| |
|
| |||||| |||||||||||||| ||||||||||| ||||| | |||| |||||||||||||||||||||||||| |||| |
|
|
| T |
13271576 |
gcattgaatgctatgaacttgtaagatggtacatgtataatttgtcctttatctgatatccatctctcaggcttaaactcca |
13271657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 83 - 343
Target Start/End: Original strand, 13085916 - 13086176
Alignment:
| Q |
83 |
tcaaatgcatcttttagtgactttaacctttaaaccatgtttcatgtgaagaacaaaagaaagctttggggttacagggtaaccttccaccacctttatg |
182 |
Q |
| |
|
|||||| ||||||||| | ||||| || || || ||||||| |||| | ||||||| ||||| |||| ||||||| | ||||||||| || | |||| |
|
|
| T |
13085916 |
tcaaattcatcttttactaactttgactttgaatccatgttccatgcggagaacaatagaaactcttggagttacagaatgaccttccacaacttgtatg |
13086015 |
T |
|
| Q |
183 |
tgaaactttggtaacaaagctgctgcaaccatcttcatttgaatcaagctaatatccttacccatacaacttctaggacctgtattgaaagctatgaact |
282 |
Q |
| |
|
|||||||| ||||| ||| ||||||||||| |||||||||| | ||||||||| || || | |||||||| |||||||| ||| || |||||||||| |
|
|
| T |
13086016 |
tgaaacttccataacatagcagctgcaaccattttcatttgaacaatgctaatatctttcccaagacaacttcgaggacctgcattaaatgctatgaact |
13086115 |
T |
|
| Q |
283 |
tgtatgatggtacatgaataatgtttcctccttctgatatccatctctcaggcttaaattc |
343 |
Q |
| |
|
|| | ||||||||||| | ||| | |||| ||||||||||||||||| ||||||||||| |
|
|
| T |
13086116 |
tgcaagatggtacatgcaaaatatgtcctttatctgatatccatctctcgggcttaaattc |
13086176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 164 - 375
Target Start/End: Complemental strand, 13081167 - 13080956
Alignment:
| Q |
164 |
accttccaccacctttatgtgaaactttggtaacaaagctgctgcaaccatcttcatttgaatcaagctaatatccttacccatacaacttctaggacct |
263 |
Q |
| |
|
|||||||||||||| ||||||||||| ||| | || ||||||||||| |||||||||| || |||||||| || || | ||| ||||| |||||| |
|
|
| T |
13081167 |
accttccaccacctgaatgtgaaacttaaataaaactgcagctgcaaccattttcatttgaagaaaactaatatctttcccaagacagcttcttggacct |
13081068 |
T |
|
| Q |
264 |
gtattgaaagctatgaacttgtatgatggtacatgaataatgtttcctccttctgatatccatctctcaggcttaaattccatgaagtcttctccccata |
363 |
Q |
| |
|
| ||| || ||||||||||| || || || || || ||||| | ||||| |||||||||||||||||||||||||| |||| | | || |||||||||| |
|
|
| T |
13081067 |
gcattaaacgctatgaacttataagacggcacttgtataatttgtcctctatctgatatccatctctcaggcttaaactccaagcaatcctctccccata |
13080968 |
T |
|
| Q |
364 |
tttgttccatcc |
375 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
13080967 |
tttgctccatcc |
13080956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 164 - 375
Target Start/End: Complemental strand, 19279470 - 19279259
Alignment:
| Q |
164 |
accttccaccacctttatgtgaaactttggtaacaaagctgctgcaaccatcttcatttgaatcaagctaatatccttacccatacaacttctaggacct |
263 |
Q |
| |
|
||||||||| |||| |||| ||||||| ||| | ||| ||||||||||| |||||||||| || ||||||| || || | ||| ||||| |||||| |
|
|
| T |
19279470 |
accttccacgacctgtatgcgaaacttccataatacagcagctgcaaccattttcatttgaaggaaagtaatatcttttccgagacagcttctcggacct |
19279371 |
T |
|
| Q |
264 |
gtattgaaagctatgaacttgtatgatggtacatgaataatgtttcctccttctgatatccatctctcaggcttaaattccatgaagtcttctccccata |
363 |
Q |
| |
|
| ||| || |||||||||||||| ||||||||||| ||||| | ||||| || |||||||||||||||||| |||||| | | | || || ||||||| |
|
|
| T |
19279370 |
gcattaaacgctatgaacttgtacgatggtacatgtataatttgtcctctatccgatatccatctctcaggccgaaattctaggcaatcatcaccccata |
19279271 |
T |
|
| Q |
364 |
tttgttccatcc |
375 |
Q |
| |
|
|||||||||||| |
|
|
| T |
19279270 |
tttgttccatcc |
19279259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 83 - 174
Target Start/End: Original strand, 13178609 - 13178700
Alignment:
| Q |
83 |
tcaaatgcatcttttagtgactttaacctttaaaccatgtttcatgtgaagaacaaaagaaagctttggggttacagggtaaccttccacca |
174 |
Q |
| |
|
|||||||| |||||||| ||||| |||||| || |||||||||||| |||||| | ||||||| | | ||||||||||| |||||||||| |
|
|
| T |
13178609 |
tcaaatgcttcttttagagacttcaaccttcaagccatgtttcatgcgaagaagcacagaaagcctcgaggttacagggtgtccttccacca |
13178700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 226
Target Start/End: Original strand, 13010582 - 13010725
Alignment:
| Q |
86 |
aatgcatcttttagtgactttaacct---ttaaaccatgtttcatgtgaagaacaaaagaaagctttggggttacagggtaaccttccaccacctttatg |
182 |
Q |
| |
|
||||||| |||||| ||||||||||| | || |||||||| ||| |||||| || |||||| |||||||||| | | |||||||||||| | |||| |
|
|
| T |
13010582 |
aatgcattttttagcgactttaaccttcatcaagccatgttttatgcgaagaataatagaaagttttggggttatggcatgaccttccaccacttgtatg |
13010681 |
T |
|
| Q |
183 |
tgaaactttggtaacaaagctgctgcaaccatcttcatttgaat |
226 |
Q |
| |
|
|||| || ||||||| | ||||| |||||||||||| |||| |
|
|
| T |
13010682 |
cgaaatttccataacaaatcagctgcgaccatcttcattagaat |
13010725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 301
Target Start/End: Original strand, 36668058 - 36668152
Alignment:
| Q |
207 |
gcaaccatcttcatttgaatcaagctaatatccttacccatacaacttctaggacctgtattgaaagctatgaacttgtatgatggtacatgaat |
301 |
Q |
| |
|
||||||||||||| | ||| ||||| ||||||||||||| || ||| || || || | ||||||||| ||||||||||| || ||||||||||| |
|
|
| T |
36668058 |
gcaaccatcttcaactcaatgaagcttatatccttacccaaacgactccttggtccagcattgaaagcaatgaacttgtaagaaggtacatgaat |
36668152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 301
Target Start/End: Original strand, 12175731 - 12175825
Alignment:
| Q |
207 |
gcaaccatcttcatttgaatcaagctaatatccttacccatacaacttctaggacctgtattgaaagctatgaacttgtatgatggtacatgaat |
301 |
Q |
| |
|
|||||||| ||||| | ||| ||||| ||||||||||||| |||||| || || || | ||||||||| ||||||||||| || || |||||||| |
|
|
| T |
12175731 |
gcaaccattttcatctcaatgaagcttatatccttacccaaacaactccttggtccagcattgaaagcaatgaacttgtaagagggaacatgaat |
12175825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 284
Target Start/End: Complemental strand, 31380325 - 31380253
Alignment:
| Q |
212 |
catcttcatttgaatcaagctaatatccttacccatacaacttctaggacctgtattgaaagctatgaacttg |
284 |
Q |
| |
|
|||||| |||||||| || |||| ||| ||||| |||||||||| || ||||||||||||| |||||||||| |
|
|
| T |
31380325 |
catcttaatttgaatgaaactaagatctttaccaatacaacttccgggtcctgtattgaaagatatgaacttg |
31380253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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